Wall clock time and date at job start Mon Mar 30 2020 04:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35834 * 117.00085 * 2 1 4 4 C 1.34413 * 125.90487 * 180.02562 * 3 2 1 5 5 N 1.31387 * 115.66462 * 180.02562 * 4 3 2 6 6 C 1.30282 * 117.07280 * 359.97438 * 5 4 3 7 7 C 1.47508 * 125.40740 * 179.74125 * 6 5 4 8 8 C 1.36183 * 126.06163 * 0.02562 * 7 6 5 9 9 N 1.37081 * 106.84372 * 180.02562 * 8 7 6 10 10 C 1.37464 * 126.32585 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00495 * 197.73036 * 10 9 8 12 12 C 1.38738 * 119.99854 * 17.72778 * 10 9 8 13 13 N 1.31469 * 120.00015 * 9.96310 * 12 10 9 14 14 Si 1.86798 * 120.00187 * 189.96216 * 12 10 9 15 15 H 1.48498 * 109.47063 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47011 * 119.99768 * 14 12 10 17 17 H 1.48492 * 109.47316 * 239.99974 * 14 12 10 18 18 C 1.36905 * 107.35185 * 0.02562 * 9 8 7 19 19 O 1.35389 * 125.61084 * 180.02562 * 18 9 8 20 20 N 1.30789 * 108.78157 * 359.72552 * 18 9 8 21 21 S 1.76153 * 109.17852 * 0.02562 * 6 5 4 22 22 H 1.09000 * 109.46848 * 60.00674 * 1 2 3 23 23 H 1.08997 * 109.47004 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47102 * 300.00066 * 1 2 3 25 25 H 1.08002 * 122.16710 * 0.03599 * 4 3 2 26 26 H 1.07999 * 126.57476 * 0.02562 * 8 7 6 27 27 H 0.97003 * 119.99833 * 179.97438 * 13 12 10 28 28 H 0.96701 * 114.00183 * 89.99301 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 3.3737 1.4183 -0.0005 5 7 3.7526 2.6764 0.0001 6 6 2.8128 3.5787 0.0006 7 6 3.0289 5.0378 0.0068 8 6 4.2354 5.6695 0.0124 9 7 3.9787 7.0160 0.0175 10 6 4.9141 8.0233 0.0236 11 1 4.6283 9.0241 0.3120 12 6 6.2255 7.7543 -0.3408 13 7 6.5340 6.5941 -0.8767 14 14 7.5527 9.0405 -0.0700 15 1 6.9508 10.2512 0.5441 16 1 8.5951 8.4932 0.8351 17 1 8.1675 9.3994 -1.3731 18 6 2.6186 7.1724 0.0154 19 8 1.9612 8.3560 0.0186 20 7 2.0588 5.9905 0.0035 21 16 1.2431 2.7793 0.0010 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 4.0832 0.6041 -0.0015 26 1 5.2078 5.1996 0.0128 27 1 7.4509 6.4062 -1.1318 28 1 1.7720 8.7032 -0.8639 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260156344.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:17 Heat of formation + Delta-G solvation = 7.840376 kcal Electronic energy + Delta-G solvation = -17195.330799 eV Core-core repulsion = 14146.513442 eV Total energy + Delta-G solvation = -3048.817357 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.50127 -40.62966 -39.19364 -37.88469 -36.09002 -33.20697 -31.39062 -29.30824 -28.01483 -27.08728 -25.64018 -23.01247 -22.20151 -20.72117 -20.49307 -19.44957 -18.59686 -17.62649 -17.27427 -17.00660 -16.46689 -16.19759 -15.74153 -15.12168 -15.11763 -14.91405 -14.51002 -14.30309 -13.73830 -13.16720 -13.05106 -12.93604 -12.56092 -12.50744 -12.10658 -12.07103 -11.68895 -10.97740 -10.60714 -10.52427 -10.21035 -9.73366 -8.80910 -8.47415 -6.59517 -0.39423 0.04008 0.55415 1.15852 1.39203 1.56841 1.57966 1.64620 2.06184 2.16430 2.42529 2.57266 2.83019 2.96683 3.82827 4.21134 4.26424 4.32676 4.49816 4.64744 4.67453 5.00022 5.06200 5.13071 5.33464 5.70176 5.81516 6.15478 6.53447 6.63336 6.81995 7.24873 7.40062 8.28027 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.033107 B = 0.005062 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.536004 B = 5529.818289 C = 6326.629013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.278 6.278 3 C -0.024 4.024 4 C -0.020 4.020 5 N -0.470 5.470 6 C 0.157 3.843 7 C -0.021 4.021 8 C 0.014 3.986 9 N -0.272 5.272 10 C -0.372 4.372 11 H 0.125 0.875 12 C 0.008 3.992 13 N -0.859 5.859 14 Si 1.021 2.979 15 H -0.252 1.252 16 H -0.268 1.268 17 H -0.265 1.265 18 C 0.275 3.725 19 O -0.442 6.442 20 N -0.496 5.496 21 S 0.093 5.907 22 H 0.063 0.937 23 H 0.142 0.858 24 H 0.063 0.937 25 H 0.198 0.802 26 H 0.178 0.822 27 H 0.292 0.708 28 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.190 -6.835 -0.207 9.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.191 6.191 3 C -0.191 4.191 4 C -0.170 4.170 5 N -0.186 5.186 6 C -0.118 4.118 7 C -0.154 4.154 8 C -0.136 4.136 9 N 0.052 4.948 10 C -0.500 4.500 11 H 0.142 0.858 12 C -0.201 4.201 13 N -0.489 5.489 14 Si 0.840 3.160 15 H -0.175 1.175 16 H -0.192 1.192 17 H -0.190 1.190 18 C -0.021 4.021 19 O -0.243 6.243 20 N -0.228 5.228 21 S 0.344 5.656 22 H 0.082 0.918 23 H 0.160 0.840 24 H 0.082 0.918 25 H 0.215 0.785 26 H 0.195 0.805 27 H 0.102 0.898 28 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -7.310 -6.634 0.297 9.876 hybrid contribution 1.724 0.243 -0.578 1.834 sum -5.587 -6.391 -0.282 8.493 Atomic orbital electron populations 1.23660 0.75414 1.07000 1.02532 1.85929 1.23430 1.20613 1.89143 1.25173 0.95500 0.89064 1.09335 1.21475 0.92619 0.93355 1.09568 1.66597 1.34473 1.00248 1.17293 1.23780 0.89500 0.93876 1.04601 1.17466 0.89863 0.88461 1.19634 1.22666 0.99328 0.82177 1.09389 1.42246 1.05805 1.06373 1.40385 1.20522 0.89567 0.91546 1.48414 0.85774 1.26705 1.00759 1.00312 0.92332 1.70018 1.22260 1.24040 1.32538 0.84486 0.75811 0.76851 0.78865 1.17543 1.19243 1.19005 1.20103 0.79826 0.86564 1.15617 1.84739 1.74117 1.30766 1.34673 1.70247 1.31355 0.97121 1.24111 1.84825 1.11023 0.97087 1.72673 0.91815 0.83995 0.91799 0.78511 0.80522 0.89756 0.74192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 10.31 113.37 1.17 1.33 15 2 O -0.28 -7.18 10.57 -91.68 -0.97 -8.15 15 3 C -0.02 -0.78 7.34 66.94 0.49 -0.29 15 4 C -0.02 -0.69 11.29 83.88 0.95 0.26 15 5 N -0.47 -20.28 10.51 -189.61 -1.99 -22.28 15 6 C 0.16 7.05 7.47 87.37 0.65 7.70 15 7 C -0.02 -1.08 7.03 40.47 0.28 -0.80 15 8 C 0.01 0.77 10.08 83.39 0.84 1.61 15 9 N -0.27 -14.50 2.93 -463.95 -1.36 -15.86 15 10 C -0.37 -18.88 10.04 83.93 0.84 -18.04 15 11 H 0.12 5.91 7.85 -2.91 -0.02 5.89 15 12 C 0.01 0.38 5.38 84.87 0.46 0.84 15 13 N -0.86 -43.62 10.81 21.62 0.23 -43.39 15 14 Si 1.02 36.43 29.56 68.60 2.03 38.46 15 15 H -0.25 -8.55 7.11 99.48 0.71 -7.84 15 16 H -0.27 -9.37 7.11 99.48 0.71 -8.67 15 17 H -0.27 -9.10 7.11 99.48 0.71 -8.39 15 18 C 0.28 13.80 9.00 179.58 1.62 15.42 15 19 O -0.44 -18.54 13.53 -86.82 -1.17 -19.71 15 20 N -0.50 -25.16 11.34 -302.44 -3.43 -28.59 15 21 S 0.09 3.26 22.32 -56.49 -1.26 2.00 15 22 H 0.06 1.05 8.08 -2.39 -0.02 1.03 15 23 H 0.14 1.39 8.14 -2.39 -0.02 1.37 15 24 H 0.06 1.05 8.08 -2.39 -0.02 1.03 15 25 H 0.20 5.69 8.06 -2.91 -0.02 5.67 15 26 H 0.18 9.94 6.35 -2.91 -0.02 9.92 15 27 H 0.29 13.51 8.31 -92.71 -0.77 12.74 15 28 H 0.40 12.50 9.06 -74.06 -0.67 11.82 15 Total: -1.00 -64.83 274.76 -0.07 -64.90 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.56 Total: 24.59 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 7.30 Total: 8.03 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -6.55 Total: -110.11 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -2.14 Total: -27.86 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 2.03 Total: 38.46 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.26 Total: 2.00 kcal Total: -64.83 -0.07 -64.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156344.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.738 kcal (2) G-P(sol) polarization free energy of solvation -64.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds