Wall clock time and date at job start Mon Mar 30 2020 05:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.47579 * 122.28142 * 2 1 4 4 C 1.51955 * 109.14992 * 114.54445 * 3 2 1 5 5 H 1.09001 * 108.59007 * 296.14897 * 4 3 2 6 6 C 1.50705 * 108.59008 * 178.31683 * 4 3 2 7 7 H 1.08001 * 119.99636 * 275.26950 * 6 4 3 8 8 C 1.37878 * 119.99658 * 95.26142 * 6 4 3 9 9 N 1.31520 * 119.99498 * 186.29123 * 8 6 4 10 10 Si 1.86795 * 120.00193 * 6.29694 * 8 6 4 11 11 H 1.48500 * 109.47364 * 90.46767 * 10 8 6 12 12 H 1.48500 * 109.47165 * 210.46849 * 10 8 6 13 13 H 1.48499 * 109.47285 * 330.46731 * 10 8 6 14 14 C 1.50015 * 113.95935 * 57.30494 * 4 3 2 15 15 C 1.39268 * 117.38227 * 153.20402 * 14 4 3 16 16 C 1.37797 * 120.74364 * 178.92542 * 15 14 4 17 17 C 1.38267 * 120.12181 * 359.81524 * 16 15 14 18 18 C 1.38114 * 119.45311 * 0.58353 * 17 16 15 19 19 C 1.37809 * 123.92700 * 332.98974 * 14 4 3 20 20 S 1.66725 * 122.28008 * 179.71214 * 2 1 3 21 21 O 1.42109 * 106.77196 * 332.06103 * 20 2 1 22 22 O 1.42104 * 106.77182 * 105.96790 * 20 2 1 23 23 H 1.08996 * 109.46766 * 90.00076 * 1 2 3 24 24 H 1.09000 * 109.46724 * 209.99936 * 1 2 3 25 25 H 1.08996 * 109.47038 * 330.00069 * 1 2 3 26 26 H 1.09001 * 109.52399 * 234.44909 * 3 2 1 27 27 H 1.09001 * 109.52788 * 354.64219 * 3 2 1 28 28 H 0.97001 * 119.99354 * 180.02562 * 9 8 6 29 29 H 1.08004 * 119.62799 * 358.93703 * 15 14 4 30 30 H 1.08003 * 119.94155 * 179.83859 * 16 15 14 31 31 H 1.08000 * 120.27905 * 180.55231 * 17 16 15 32 32 H 1.07993 * 119.86075 * 180.10779 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2533 1.2477 0.0000 4 6 3.0236 1.3507 1.3058 5 1 2.3093 1.4280 2.1255 6 6 3.8553 2.6071 1.2751 7 1 4.8286 2.5990 0.8071 8 6 3.3735 3.7667 1.8444 9 7 4.0415 4.8917 1.7106 10 14 1.7722 3.7399 2.8059 11 1 2.0583 3.4626 4.2364 12 1 1.0985 5.0575 2.6822 13 1 0.8867 2.6785 2.2633 14 6 3.9314 0.1861 1.5710 15 6 5.0488 0.4141 2.3704 16 6 5.9169 -0.6113 2.6765 17 6 5.6837 -1.8855 2.1930 18 6 4.5822 -2.1172 1.3928 19 6 3.7197 -1.0824 1.0760 20 16 2.3555 -1.4096 0.0071 21 8 1.5582 -2.3950 0.6495 22 8 2.8909 -1.5629 -1.3003 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 2.9528 1.2367 -0.8358 27 1 1.5831 2.1020 -0.0959 28 1 3.7028 5.7075 2.1114 29 1 5.2369 1.4057 2.7549 30 1 6.7809 -0.4194 3.2955 31 1 6.3576 -2.6929 2.4387 32 1 4.3927 -3.1103 1.0130 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260162314.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:42 Heat of formation + Delta-G solvation = -39.965223 kcal Electronic energy + Delta-G solvation = -18878.580830 eV Core-core repulsion = 15931.230811 eV Total energy + Delta-G solvation = -2947.350020 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.11883 -36.76457 -36.44609 -35.47036 -33.57512 -31.85850 -30.81126 -28.83012 -26.68708 -23.89199 -23.13814 -22.45731 -20.18014 -18.35371 -17.46239 -17.30523 -16.77563 -15.73302 -15.36095 -14.84869 -14.48396 -14.07878 -13.92923 -13.62601 -13.42347 -12.85166 -12.58751 -12.52670 -12.14280 -11.87421 -11.66771 -11.65082 -11.44754 -11.19427 -11.04558 -10.85509 -10.23585 -10.15576 -9.99320 -9.63783 -8.95145 -8.88347 -8.59286 -8.15336 -6.38505 -4.42539 0.83091 1.31746 1.78073 3.06464 3.15569 3.16521 3.19673 3.85948 3.98840 4.13613 4.81226 5.06881 5.14823 5.19206 5.24515 5.35463 5.64344 5.69922 5.75709 5.86346 5.97119 6.08003 6.12840 6.28127 6.40526 6.45640 6.57845 6.78488 6.82658 6.86181 7.06533 7.32128 7.44710 8.16285 8.66589 9.19494 10.72450 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.018861 B = 0.010263 C = 0.007538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.172352 B = 2727.555322 C = 3713.699827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -1.009 6.009 3 C 0.121 3.879 4 C 0.001 3.999 5 H 0.070 0.930 6 C -0.518 4.518 7 H 0.085 0.915 8 C 0.081 3.919 9 N -0.881 5.881 10 Si 0.867 3.133 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.259 1.259 14 C 0.049 3.951 15 C -0.112 4.112 16 C -0.082 4.082 17 C -0.152 4.152 18 C -0.040 4.040 19 C -0.668 4.668 20 S 2.691 3.309 21 O -0.974 6.974 22 O -0.965 6.965 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.269 0.731 29 H 0.149 0.851 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.750 -8.589 0.742 9.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.851 5.851 3 C -0.003 4.003 4 C -0.019 4.019 5 H 0.087 0.913 6 C -0.556 4.556 7 H 0.103 0.897 8 C -0.124 4.124 9 N -0.516 5.516 10 Si 0.693 3.307 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.183 1.183 14 C 0.048 3.952 15 C -0.131 4.131 16 C -0.100 4.100 17 C -0.171 4.171 18 C -0.059 4.059 19 C -0.757 4.757 20 S 2.784 3.216 21 O -0.964 6.964 22 O -0.955 6.955 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.167 0.833 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.986 -9.137 0.305 9.618 hybrid contribution -0.261 0.625 1.093 1.286 sum -3.246 -8.512 1.398 9.217 Atomic orbital electron populations 1.21423 0.78335 1.03462 1.01259 1.57565 1.14001 1.22356 1.91186 1.22226 0.93653 0.85285 0.99144 1.18728 0.94517 0.93126 0.95503 0.91270 1.20702 1.04543 0.90998 1.39320 0.89663 1.25066 0.96812 0.95142 0.95374 1.69879 1.39282 0.99436 1.43039 0.86993 0.84409 0.77973 0.81320 1.19768 1.20897 1.18336 1.20088 0.94316 0.91008 0.89783 1.21832 0.93518 1.00143 0.97577 1.21377 0.98448 0.93000 0.97167 1.21043 0.98258 0.97410 1.00406 1.20468 0.93337 0.96476 0.95657 1.30000 1.22111 1.01320 1.22241 1.01935 0.73432 0.72076 0.74132 1.93532 1.68406 1.57699 1.76761 1.93592 1.79734 1.85014 1.37131 0.93090 0.90833 0.90896 0.90509 0.88981 0.92047 0.83304 0.85949 0.85840 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.43 10.87 59.85 0.65 2.08 16 2 N -1.01 -17.90 3.42 -121.52 -0.42 -18.31 16 3 C 0.12 2.33 5.57 -3.98 -0.02 2.31 16 4 C 0.00 0.02 1.98 -93.78 -0.19 -0.16 16 5 H 0.07 1.47 4.88 -51.93 -0.25 1.22 16 6 C -0.52 -12.53 6.87 -34.44 -0.24 -12.77 16 7 H 0.09 2.27 7.94 -52.49 -0.42 1.85 16 8 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 9 N -0.88 -23.91 13.96 55.43 0.77 -23.14 16 10 Si 0.87 18.78 27.22 -169.99 -4.63 14.15 16 11 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.26 -5.23 6.46 56.52 0.37 -4.86 16 14 C 0.05 1.00 5.54 -104.73 -0.58 0.42 16 15 C -0.11 -2.15 8.93 -39.36 -0.35 -2.50 16 16 C -0.08 -1.31 10.02 -39.73 -0.40 -1.71 16 17 C -0.15 -2.32 10.08 -39.62 -0.40 -2.72 16 18 C -0.04 -0.68 9.68 -39.57 -0.38 -1.06 16 19 C -0.67 -12.80 5.80 -39.69 -0.23 -13.03 16 20 S 2.69 50.61 5.46 -107.50 -0.59 50.03 16 21 O -0.97 -19.11 17.02 -57.10 -0.97 -20.08 16 22 O -0.96 -20.10 18.04 -57.10 -1.03 -21.13 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.99 7.32 -51.93 -0.38 0.61 16 25 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 26 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.09 1.69 8.01 -51.93 -0.42 1.27 16 28 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.15 2.97 6.77 -52.48 -0.36 2.62 16 30 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16 31 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 278.40 15.07 4.20 4.20 Total: -1.00 -29.82 278.40 -8.42 -38.24 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -3.53 Total: 3.24 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: -2.23 Total: -27.21 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.36 Total: -41.45 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -2.00 Total: -41.21 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.63 Total: 14.15 kcal Atomic # 16 Polarization: 50.61 SS G_CDS: -0.59 Total: 50.03 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.82 -8.42 -38.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260162314.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.723 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds