Wall clock time and date at job start Mon Mar 30 2020 05:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.47579 * 122.28142 * 2 1 4 4 C 1.51955 * 109.14992 * 114.54445 * 3 2 1 5 5 H 1.09001 * 108.59007 * 296.14897 * 4 3 2 6 6 C 1.50705 * 108.59008 * 178.31683 * 4 3 2 7 7 H 1.08001 * 119.99636 * 275.26950 * 6 4 3 8 8 C 1.37878 * 119.99658 * 95.26142 * 6 4 3 9 9 N 1.31520 * 119.99498 * 186.29123 * 8 6 4 10 10 Si 1.86795 * 120.00193 * 6.29694 * 8 6 4 11 11 H 1.48500 * 109.47364 * 90.46767 * 10 8 6 12 12 H 1.48500 * 109.47165 * 210.46849 * 10 8 6 13 13 H 1.48499 * 109.47285 * 330.46731 * 10 8 6 14 14 C 1.50015 * 113.95935 * 57.30494 * 4 3 2 15 15 C 1.39268 * 117.38227 * 153.20402 * 14 4 3 16 16 C 1.37797 * 120.74364 * 178.92542 * 15 14 4 17 17 C 1.38267 * 120.12181 * 359.81524 * 16 15 14 18 18 C 1.38114 * 119.45311 * 0.58353 * 17 16 15 19 19 C 1.37809 * 123.92700 * 332.98974 * 14 4 3 20 20 S 1.66725 * 122.28008 * 179.71214 * 2 1 3 21 21 O 1.42109 * 106.77196 * 332.06103 * 20 2 1 22 22 O 1.42104 * 106.77182 * 105.96790 * 20 2 1 23 23 H 1.08996 * 109.46766 * 90.00076 * 1 2 3 24 24 H 1.09000 * 109.46724 * 209.99936 * 1 2 3 25 25 H 1.08996 * 109.47038 * 330.00069 * 1 2 3 26 26 H 1.09001 * 109.52399 * 234.44909 * 3 2 1 27 27 H 1.09001 * 109.52788 * 354.64219 * 3 2 1 28 28 H 0.97001 * 119.99354 * 180.02562 * 9 8 6 29 29 H 1.08004 * 119.62799 * 358.93703 * 15 14 4 30 30 H 1.08003 * 119.94155 * 179.83859 * 16 15 14 31 31 H 1.08000 * 120.27905 * 180.55231 * 17 16 15 32 32 H 1.07993 * 119.86075 * 180.10779 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2533 1.2477 0.0000 4 6 3.0236 1.3507 1.3058 5 1 2.3093 1.4280 2.1255 6 6 3.8553 2.6071 1.2751 7 1 4.8286 2.5990 0.8071 8 6 3.3735 3.7667 1.8444 9 7 4.0415 4.8917 1.7106 10 14 1.7722 3.7399 2.8059 11 1 2.0583 3.4626 4.2364 12 1 1.0985 5.0575 2.6822 13 1 0.8867 2.6785 2.2633 14 6 3.9314 0.1861 1.5710 15 6 5.0488 0.4141 2.3704 16 6 5.9169 -0.6113 2.6765 17 6 5.6837 -1.8855 2.1930 18 6 4.5822 -2.1172 1.3928 19 6 3.7197 -1.0824 1.0760 20 16 2.3555 -1.4096 0.0071 21 8 1.5582 -2.3950 0.6495 22 8 2.8909 -1.5629 -1.3003 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 2.9528 1.2367 -0.8358 27 1 1.5831 2.1020 -0.0959 28 1 3.7028 5.7075 2.1114 29 1 5.2369 1.4057 2.7549 30 1 6.7809 -0.4194 3.2955 31 1 6.3576 -2.6929 2.4387 32 1 4.3927 -3.1103 1.0130 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260162314.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:42 Heat of formation + Delta-G solvation = -60.658843 kcal Electronic energy + Delta-G solvation = -18879.478173 eV Core-core repulsion = 15931.230811 eV Total energy + Delta-G solvation = -2948.247363 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.53527 -38.28901 -37.89619 -37.00527 -35.22862 -33.50996 -32.19918 -30.29778 -28.13961 -25.47722 -24.60101 -23.83318 -21.73623 -19.83356 -19.12472 -18.87060 -18.22992 -17.18226 -16.87951 -16.38503 -15.88615 -15.63602 -15.42045 -14.99752 -14.85826 -14.52515 -14.03019 -13.87546 -13.56542 -13.30293 -13.21179 -13.16851 -12.86644 -12.81509 -12.51204 -12.47072 -11.83441 -11.72110 -11.62191 -11.31580 -10.82377 -10.28365 -10.00751 -9.59293 -8.32513 -6.39687 -0.61555 -0.06668 0.40955 1.35125 1.40337 1.47591 1.70844 2.31466 2.40750 2.61955 2.99903 3.63821 3.73910 3.83074 3.90387 4.08511 4.30586 4.39090 4.48519 4.54087 4.71020 4.71769 4.85997 4.92859 5.00272 5.04408 5.17790 5.21139 5.35803 5.47042 5.63663 5.68981 6.01302 6.24455 6.67965 7.24985 8.82043 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.018861 B = 0.010263 C = 0.007538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.172352 B = 2727.555322 C = 3713.699827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -1.008 6.008 3 C 0.124 3.876 4 C 0.003 3.997 5 H 0.070 0.930 6 C -0.506 4.506 7 H 0.046 0.954 8 C 0.032 3.968 9 N -0.932 5.932 10 Si 0.922 3.078 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.232 1.232 14 C 0.021 3.979 15 C -0.137 4.137 16 C -0.074 4.074 17 C -0.139 4.139 18 C -0.053 4.053 19 C -0.682 4.682 20 S 2.704 3.296 21 O -0.981 6.981 22 O -0.989 6.989 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.270 0.730 29 H 0.128 0.872 30 H 0.156 0.844 31 H 0.170 0.830 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.514 -10.652 1.445 11.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.851 5.851 3 C 0.000 4.000 4 C -0.017 4.017 5 H 0.087 0.913 6 C -0.545 4.545 7 H 0.064 0.936 8 C -0.168 4.168 9 N -0.570 5.570 10 Si 0.745 3.255 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.155 1.155 14 C 0.020 3.980 15 C -0.156 4.156 16 C -0.092 4.092 17 C -0.158 4.158 18 C -0.072 4.072 19 C -0.771 4.771 20 S 2.799 3.201 21 O -0.971 6.971 22 O -0.979 6.979 23 H 0.092 0.908 24 H 0.101 0.899 25 H 0.105 0.895 26 H 0.086 0.914 27 H 0.120 0.880 28 H 0.079 0.921 29 H 0.146 0.854 30 H 0.174 0.826 31 H 0.187 0.813 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.774 -11.234 0.995 11.893 hybrid contribution 0.100 1.173 0.870 1.464 sum -3.673 -10.061 1.865 10.872 Atomic orbital electron populations 1.21777 0.76076 1.04620 1.03231 1.57454 1.15416 1.21041 1.91171 1.21974 0.93946 0.86362 0.97744 1.18660 0.94463 0.92182 0.96425 0.91255 1.20711 1.03340 0.92502 1.37905 0.93579 1.25773 1.00101 0.94584 0.96354 1.70012 1.41543 1.00280 1.45129 0.86100 0.80986 0.78551 0.79824 1.19764 1.21064 1.15488 1.19988 0.95109 0.91344 0.91563 1.21794 0.94652 1.00388 0.98716 1.21761 0.98367 0.92555 0.96494 1.21566 0.97810 0.98098 0.98310 1.21003 0.93390 0.97140 0.95684 1.30037 1.22987 1.01458 1.22597 1.01406 0.73157 0.72055 0.73517 1.93515 1.68598 1.58271 1.76760 1.93561 1.80193 1.85595 1.38560 0.90820 0.89907 0.89536 0.91401 0.87987 0.92117 0.85447 0.82590 0.81292 0.83516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.24 10.87 127.77 1.39 3.63 16 2 N -1.01 -34.15 3.42 -538.38 -1.84 -35.99 16 3 C 0.12 4.73 5.57 85.83 0.48 5.21 16 4 C 0.00 0.11 1.98 -12.84 -0.03 0.08 16 5 H 0.07 2.89 4.88 -2.39 -0.01 2.88 16 6 C -0.51 -25.35 6.87 25.60 0.18 -25.17 16 7 H 0.05 2.61 7.94 -2.91 -0.02 2.59 16 8 C 0.03 1.64 5.47 84.65 0.46 2.10 16 9 N -0.93 -52.43 13.96 21.45 0.30 -52.13 16 10 Si 0.92 38.51 27.22 68.60 1.87 40.38 16 11 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 12 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 13 H -0.23 -8.58 6.46 99.48 0.64 -7.93 16 14 C 0.02 0.86 5.54 -19.93 -0.11 0.75 16 15 C -0.14 -5.23 8.93 22.41 0.20 -5.03 16 16 C -0.07 -2.19 10.02 22.17 0.22 -1.97 16 17 C -0.14 -3.72 10.08 22.25 0.22 -3.50 16 18 C -0.05 -1.65 9.68 22.27 0.22 -1.43 16 19 C -0.68 -25.26 5.80 22.20 0.13 -25.13 16 20 S 2.70 98.00 5.46 -56.49 -0.31 97.69 16 21 O -0.98 -36.56 17.02 -128.07 -2.18 -38.74 16 22 O -0.99 -40.33 18.04 -128.07 -2.31 -42.64 16 23 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.08 1.99 7.32 -2.39 -0.02 1.98 16 25 H 0.09 2.01 8.10 -2.39 -0.02 1.99 16 26 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.10 3.62 8.01 -2.39 -0.02 3.61 16 28 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 29 H 0.13 5.31 6.77 -2.91 -0.02 5.29 16 30 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 31 H 0.17 2.98 8.06 -2.91 -0.02 2.95 16 32 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -65.44 278.40 -0.05 -65.48 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 1.07 Total: 16.40 kcal Atomic # 6 Polarization: -53.82 SS G_CDS: 3.36 Total: -50.46 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -1.54 Total: -88.13 kcal Atomic # 8 Polarization: -76.88 SS G_CDS: -4.49 Total: -81.37 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 1.87 Total: 40.38 kcal Atomic # 16 Polarization: 98.00 SS G_CDS: -0.31 Total: 97.69 kcal Total: -65.44 -0.05 -65.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260162314.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.824 kcal (2) G-P(sol) polarization free energy of solvation -65.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds