Wall clock time and date at job start Mon Mar 30 2020 05:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33410 * 125.96347 * 2 1 4 4 N 1.32032 * 114.56874 * 179.75394 * 3 2 1 5 5 C 1.29628 * 116.90217 * 0.47644 * 4 3 2 6 6 N 1.39007 * 124.93595 * 179.80909 * 5 4 3 7 7 C 1.47047 * 125.41634 * 359.70296 * 6 5 4 8 8 C 1.54102 * 103.86597 * 179.97438 * 7 6 5 9 9 N 1.47062 * 103.98842 * 359.92478 * 8 7 6 10 10 C 1.46493 * 125.40573 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.47156 * 90.00198 * 10 9 8 12 12 H 1.08003 * 120.00028 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00282 * 179.97438 * 11 10 9 14 14 N 1.31504 * 120.00031 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99731 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47051 * 89.99958 * 15 13 11 17 17 H 1.48496 * 109.46740 * 209.99800 * 15 13 11 18 18 H 1.48504 * 109.47188 * 329.99989 * 15 13 11 19 19 C 1.33956 * 125.40328 * 179.69353 * 6 5 4 20 20 O 1.21574 * 123.04595 * 0.02562 * 19 6 5 21 21 S 1.70961 * 110.11388 * 359.54936 * 5 4 3 22 22 H 1.09003 * 109.46902 * 269.99178 * 1 2 3 23 23 H 1.08994 * 109.47398 * 29.99380 * 1 2 3 24 24 H 1.09003 * 109.47084 * 150.00050 * 1 2 3 25 25 H 1.07997 * 122.72084 * 359.96966 * 3 2 1 26 26 H 1.09001 * 110.55217 * 61.39584 * 7 6 5 27 27 H 1.09000 * 110.66944 * 298.65227 * 7 6 5 28 28 H 1.09002 * 110.55087 * 118.59255 * 8 7 6 29 29 H 1.08997 * 110.54745 * 241.25850 * 8 7 6 30 30 H 1.09002 * 109.47221 * 209.99725 * 10 9 8 31 31 H 1.08994 * 109.47809 * 330.00345 * 10 9 8 32 32 H 0.97002 * 120.00295 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2905 1.0798 0.0000 4 7 3.5848 0.8190 0.0052 5 6 3.9314 -0.4301 -0.0001 6 7 5.2423 -0.8925 0.0002 7 6 6.4446 -0.0457 0.0003 8 6 7.6080 -1.0563 0.0013 9 7 6.9406 -2.3667 0.0036 10 6 7.6194 -3.6649 0.0058 11 6 7.8521 -4.1077 1.4274 12 1 7.5273 -3.4841 2.2473 13 6 8.4798 -5.3088 1.6815 14 7 8.6824 -5.6953 2.9220 15 14 9.0423 -6.3869 0.2634 16 1 10.4323 -6.0242 -0.1130 17 1 8.9975 -7.8123 0.6774 18 1 8.1443 -6.1811 -0.9013 19 6 5.6110 -2.1803 0.0007 20 8 4.8138 -3.0981 0.0004 21 16 2.5417 -1.4259 -0.0002 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3634 0.8900 -0.5137 24 1 -0.3633 -0.8900 -0.5138 25 1 1.8979 2.0859 -0.0005 26 1 6.4759 0.5742 0.8963 27 1 6.4777 0.5755 -0.8947 28 1 8.2176 -0.9389 -0.8946 29 1 8.2182 -0.9362 0.8964 30 1 6.9990 -4.4002 -0.5067 31 1 8.5764 -3.5755 -0.5081 32 1 9.1237 -6.5405 3.1007 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260247003.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:41 Heat of formation + Delta-G solvation = 22.268550 kcal Electronic energy + Delta-G solvation = -17802.170435 eV Core-core repulsion = 14889.811825 eV Total energy + Delta-G solvation = -2912.358610 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.47263 -40.48035 -37.66270 -36.53478 -34.71010 -33.13786 -31.16831 -29.44672 -27.75822 -25.50480 -24.91147 -23.77981 -21.82583 -20.43050 -19.24442 -19.09928 -18.05402 -17.83000 -17.25733 -16.33004 -15.86771 -15.70473 -15.48939 -15.26075 -14.88892 -14.48113 -14.13354 -13.88966 -13.73060 -13.58375 -13.45481 -13.16245 -12.84805 -12.44129 -12.12878 -12.04480 -11.78435 -11.34143 -11.30002 -10.83425 -10.78788 -10.24430 -9.75714 -8.95658 -8.35451 -6.43391 -0.27405 0.00942 0.81727 1.10461 1.35545 1.40916 1.50386 1.60615 2.11215 2.31320 2.66171 2.98822 3.38495 3.43446 4.03207 4.04617 4.18419 4.35554 4.48497 4.62938 4.74855 4.80561 4.84013 4.87009 4.97090 5.13316 5.24221 5.37167 5.40064 5.61562 6.20321 6.31285 6.58511 6.69197 7.13355 7.27087 8.81628 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.034196 B = 0.004975 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.618344 B = 5626.275314 C = 6054.942051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.256 4.256 3 C 0.047 3.953 4 N -0.523 5.523 5 C 0.273 3.727 6 N -0.544 5.544 7 C 0.104 3.896 8 C 0.088 3.912 9 N -0.607 5.607 10 C 0.258 3.742 11 C -0.549 4.549 12 H 0.026 0.974 13 C 0.014 3.986 14 N -0.944 5.944 15 Si 0.951 3.049 16 H -0.247 1.247 17 H -0.283 1.283 18 H -0.250 1.250 19 C 0.684 3.316 20 O -0.599 6.599 21 S 0.153 5.847 22 H 0.084 0.916 23 H 0.104 0.896 24 H 0.071 0.929 25 H 0.211 0.789 26 H 0.101 0.899 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.091 0.909 30 H 0.029 0.971 31 H 0.070 0.930 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.767 15.021 -9.964 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.379 4.379 3 C -0.102 4.102 4 N -0.247 5.247 5 C -0.093 4.093 6 N -0.276 5.276 7 C -0.019 4.019 8 C -0.034 4.034 9 N -0.341 5.341 10 C 0.137 3.863 11 C -0.587 4.587 12 H 0.044 0.956 13 C -0.184 4.184 14 N -0.583 5.583 15 Si 0.772 3.228 16 H -0.171 1.171 17 H -0.209 1.209 18 H -0.173 1.173 19 C 0.384 3.616 20 O -0.478 6.478 21 S 0.404 5.596 22 H 0.103 0.897 23 H 0.122 0.878 24 H 0.090 0.910 25 H 0.227 0.773 26 H 0.119 0.881 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.109 0.891 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.733 13.585 -9.851 19.400 hybrid contribution 0.265 0.046 0.304 0.406 sum -9.468 13.632 -9.548 19.147 Atomic orbital electron populations 1.20295 0.84043 1.04473 1.03792 1.26483 1.03322 0.94369 1.13703 1.21828 0.84827 1.01473 1.02072 1.66337 1.20135 1.15318 1.22867 1.22896 0.89407 0.92997 1.04009 1.43830 1.03572 1.07177 1.73037 1.22822 0.79422 0.93437 1.06180 1.22786 0.95550 0.79244 1.05802 1.47390 1.03578 1.08805 1.74345 1.19314 0.92837 0.78456 0.95665 1.21554 1.39120 1.05773 0.92293 0.95610 1.25865 0.95080 0.98639 0.98833 1.70049 1.43606 1.23168 1.21501 0.85677 0.80266 0.77668 0.79146 1.17136 1.20895 1.17343 1.16079 0.84685 0.81974 0.78821 1.90855 1.54639 1.43540 1.58754 1.85130 0.95440 1.09219 1.69829 0.89745 0.87785 0.91038 0.77269 0.88106 0.86235 0.86012 0.89071 0.95320 0.91261 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.41 71.24 0.74 -0.22 16 2 C -0.26 -5.98 6.58 24.59 0.16 -5.81 16 3 C 0.05 1.11 11.24 83.57 0.94 2.05 16 4 N -0.52 -15.74 10.40 -201.75 -2.10 -17.84 16 5 C 0.27 9.47 7.94 179.20 1.42 10.89 16 6 N -0.54 -19.67 3.13 -659.02 -2.06 -21.73 16 7 C 0.10 2.71 7.47 86.65 0.65 3.36 16 8 C 0.09 2.49 7.67 86.64 0.66 3.16 16 9 N -0.61 -25.17 2.95 -842.25 -2.48 -27.65 16 10 C 0.26 12.10 4.83 85.64 0.41 12.51 16 11 C -0.55 -31.72 9.94 25.60 0.25 -31.46 16 12 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 13 C 0.01 0.83 5.47 84.66 0.46 1.29 16 14 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 15 Si 0.95 42.40 27.47 68.60 1.88 44.28 16 16 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.25 -10.54 6.54 99.48 0.65 -9.89 16 19 C 0.68 30.21 8.26 179.47 1.48 31.69 16 20 O -0.60 -30.89 15.38 -3.95 -0.06 -30.95 16 21 S 0.15 5.03 21.15 -56.49 -1.19 3.84 16 22 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.21 3.17 8.06 -2.91 -0.02 3.15 16 26 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.03 1.44 6.98 -2.39 -0.02 1.42 16 31 H 0.07 2.80 7.57 -2.39 -0.02 2.78 16 32 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -78.20 290.99 2.55 -75.65 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: 1.08 Total: 5.43 kcal Atomic # 6 Polarization: 20.27 SS G_CDS: 7.19 Total: 27.47 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -6.34 Total: -125.71 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.06 Total: -30.95 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.88 Total: 44.28 kcal Atomic # 16 Polarization: 5.03 SS G_CDS: -1.19 Total: 3.84 kcal Total: -78.20 2.55 -75.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260247003.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.914 kcal (2) G-P(sol) polarization free energy of solvation -78.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds