Wall clock time and date at job start Mon Mar 30 2020 04:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29441 * 119.60370 * 2 1 4 4 N 1.40221 * 120.31760 * 179.97438 * 3 2 1 5 5 C 1.36830 * 120.49067 * 163.59920 * 4 3 2 6 6 H 1.07999 * 119.99959 * 179.97438 * 5 4 3 7 7 C 1.38831 * 120.00525 * 0.02562 * 5 4 3 8 8 N 1.31461 * 119.99412 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00129 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47149 * 90.00587 * 9 7 5 11 11 H 1.48505 * 109.46686 * 210.00007 * 9 7 5 12 12 H 1.48494 * 109.47187 * 330.00098 * 9 7 5 13 13 C 1.35241 * 119.01451 * 343.62758 * 4 3 2 14 14 O 1.21300 * 120.77679 * 179.71494 * 13 4 3 15 15 C 1.51092 * 118.44852 * 359.68685 * 13 4 3 16 16 H 1.09000 * 109.76508 * 149.08181 * 15 13 4 17 17 C 1.50703 * 109.61883 * 269.52648 * 15 13 4 18 18 C 1.33637 * 122.75345 * 124.11115 * 17 15 13 19 19 S 1.76195 * 107.92564 * 179.97438 * 18 17 15 20 20 C 1.70978 * 90.28289 * 359.97438 * 19 18 17 21 21 N 1.29022 * 110.16886 * 359.97438 * 20 19 18 22 22 O 1.35122 * 119.59963 * 180.02562 * 2 1 3 23 23 H 1.08999 * 109.47236 * 269.97826 * 1 2 3 24 24 H 1.08999 * 109.47024 * 29.97714 * 1 2 3 25 25 H 1.08999 * 109.47691 * 149.97486 * 1 2 3 26 26 H 0.97001 * 120.00050 * 179.97438 * 8 7 5 27 27 H 1.07997 * 126.03363 * 0.02562 * 18 17 15 28 28 H 1.08003 * 124.91744 * 179.73676 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1464 1.1254 0.0000 4 7 3.5485 1.1429 0.0005 5 6 4.2288 2.2825 -0.3324 6 1 5.3087 2.2872 -0.3289 7 6 3.5308 3.4331 -0.6735 8 7 2.2162 3.4278 -0.6762 9 14 4.4595 4.9890 -1.1273 10 1 4.7110 5.0064 -2.5907 11 1 3.6508 6.1760 -0.7499 12 1 5.7549 5.0215 -0.4020 13 6 4.2184 0.0165 0.3344 14 8 5.4312 -0.0056 0.3404 15 6 3.4209 -1.2135 0.7004 16 1 3.9734 -2.1091 0.4160 17 6 3.1650 -1.2273 2.1855 18 6 1.9369 -1.3033 2.7069 19 16 2.0912 -1.2918 4.4620 20 6 3.7919 -1.1866 4.3203 21 7 4.1343 -1.1673 3.0765 22 8 2.1744 -1.1749 -0.0005 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5142 26 1 1.7284 4.2317 -0.9142 27 1 1.0131 -1.3624 2.1506 28 1 4.4797 -1.1389 5.1516 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260264519.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:39 Heat of formation + Delta-G solvation = 51.952257 kcal Electronic energy + Delta-G solvation = -18439.419916 eV Core-core repulsion = 15392.515394 eV Total energy + Delta-G solvation = -3046.904522 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.73272 -38.96020 -37.26151 -35.10022 -32.66682 -31.62261 -30.59488 -28.24567 -27.36728 -25.05664 -24.24651 -21.65572 -20.07773 -18.90611 -18.56652 -17.78219 -16.10453 -15.78420 -15.46204 -15.08077 -14.68610 -14.17062 -13.85694 -13.65166 -13.43007 -12.98934 -12.80845 -12.38115 -11.97546 -11.79592 -11.52444 -11.33639 -11.03685 -10.65779 -10.39459 -10.34800 -9.74396 -9.48772 -9.35214 -8.95912 -8.86447 -8.23638 -7.57954 -6.21716 -3.91066 0.83252 1.48445 1.77981 2.47740 2.89431 3.14931 3.22189 3.27049 3.51781 3.76582 3.89199 4.31865 4.44400 4.76934 5.06126 5.28993 5.33944 5.42849 5.65959 5.82513 5.88176 6.05549 6.11240 6.45896 6.87069 7.30311 7.49547 7.85562 8.09191 8.51657 8.99733 9.44885 9.75119 10.73048 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.022711 B = 0.007410 C = 0.006812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.589164 B = 3777.551075 C = 4109.630170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.164 3.836 3 N -0.177 5.177 4 N -0.268 5.268 5 C -0.322 4.322 6 H 0.118 0.882 7 C 0.044 3.956 8 N -0.814 5.814 9 Si 0.927 3.073 10 H -0.275 1.275 11 H -0.280 1.280 12 H -0.267 1.267 13 C 0.403 3.597 14 O -0.544 6.544 15 C 0.163 3.837 16 H 0.147 0.853 17 C 0.042 3.958 18 C -0.229 4.229 19 S 0.106 5.894 20 C 0.023 3.977 21 N -0.443 5.443 22 O -0.344 6.344 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.077 0.923 26 H 0.264 0.736 27 H 0.182 0.818 28 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.548 -7.844 7.371 12.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.062 4.062 3 N -0.004 5.004 4 N -0.075 5.075 5 C -0.449 4.449 6 H 0.135 0.865 7 C -0.165 4.165 8 N -0.448 5.448 9 Si 0.753 3.247 10 H -0.201 1.201 11 H -0.205 1.205 12 H -0.192 1.192 13 C 0.190 3.810 14 O -0.424 6.424 15 C 0.099 3.901 16 H 0.164 0.836 17 C -0.090 4.090 18 C -0.368 4.368 19 S 0.357 5.643 20 C -0.276 4.276 21 N -0.156 5.156 22 O -0.250 6.250 23 H 0.090 0.910 24 H 0.113 0.887 25 H 0.095 0.905 26 H 0.074 0.926 27 H 0.199 0.801 28 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -6.260 -7.050 7.953 12.334 hybrid contribution 0.847 0.186 -0.861 1.222 sum -5.413 -6.864 7.092 11.256 Atomic orbital electron populations 1.20282 0.84693 1.04154 1.02761 1.25662 0.95903 0.80190 1.04482 1.76162 0.92336 1.19487 1.12406 1.44696 0.99249 1.09884 1.53701 1.19676 0.92091 0.86180 1.46941 0.86484 1.25380 0.95655 0.99126 0.96384 1.70223 1.05378 1.27909 1.41281 0.85933 0.79456 0.80361 0.78997 1.20067 1.20539 1.19191 1.20556 0.88896 0.84977 0.86594 1.90565 1.12695 1.82957 1.56163 1.21088 0.83427 1.00554 0.85050 0.83607 1.20646 0.88096 1.03236 0.97061 1.26817 1.02859 1.11087 0.96069 1.83783 1.07604 1.68055 1.04825 1.28428 0.97274 1.04529 0.97406 1.65993 1.35630 1.13810 1.00182 1.86000 1.33723 1.35557 1.69768 0.91026 0.88716 0.90452 0.92574 0.80063 0.78300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.04 36.00 0.36 -0.53 15 2 C 0.16 3.40 6.13 -13.29 -0.08 3.32 15 3 N -0.18 -4.54 8.76 32.56 0.29 -4.26 15 4 N -0.27 -7.58 3.61 -10.82 -0.04 -7.62 15 5 C -0.32 -9.45 9.68 -15.10 -0.15 -9.60 15 6 H 0.12 3.50 7.23 -52.49 -0.38 3.12 15 7 C 0.04 1.21 5.49 -17.49 -0.10 1.11 15 8 N -0.81 -22.43 11.34 55.49 0.63 -21.80 15 9 Si 0.93 20.93 29.55 -169.99 -5.02 15.90 15 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 11 H -0.28 -6.13 7.11 56.52 0.40 -5.72 15 12 H -0.27 -6.03 7.11 56.52 0.40 -5.62 15 13 C 0.40 10.77 6.88 -10.58 -0.07 10.69 15 14 O -0.54 -15.90 16.83 5.54 0.09 -15.81 15 15 C 0.16 3.50 3.85 -28.84 -0.11 3.39 15 16 H 0.15 2.83 8.14 -51.93 -0.42 2.41 15 17 C 0.04 0.82 5.90 -84.22 -0.50 0.33 15 18 C -0.23 -3.69 10.00 29.12 0.29 -3.40 15 19 S 0.11 1.34 23.22 -107.50 -2.50 -1.15 15 20 C 0.02 0.33 12.23 51.58 0.63 0.97 15 21 N -0.44 -8.61 10.41 -11.89 -0.12 -8.73 15 22 O -0.34 -6.94 9.50 -17.07 -0.16 -7.11 15 23 H 0.07 0.90 7.67 -51.93 -0.40 0.50 15 24 H 0.09 1.45 8.14 -51.93 -0.42 1.03 15 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 26 H 0.26 6.75 8.31 -40.82 -0.34 6.41 15 27 H 0.18 2.61 6.20 -52.49 -0.33 2.28 15 28 H 0.20 2.11 8.06 -52.48 -0.42 1.69 15 LS Contribution 266.64 15.07 4.02 4.02 Total: -1.00 -34.92 266.64 -4.47 -39.39 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -1.93 Total: 0.89 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 0.28 Total: 6.28 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.75 Total: -42.41 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.07 Total: -22.92 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.50 Total: -1.15 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -34.92 -4.47 -39.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260264519.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.339 kcal (2) G-P(sol) polarization free energy of solvation -34.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds