Wall clock time and date at job start Mon Mar 30 2020 04:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29441 * 119.60370 * 2 1 4 4 N 1.40221 * 120.31760 * 179.97438 * 3 2 1 5 5 C 1.36830 * 120.49067 * 163.59920 * 4 3 2 6 6 H 1.07999 * 119.99959 * 179.97438 * 5 4 3 7 7 C 1.38831 * 120.00525 * 0.02562 * 5 4 3 8 8 N 1.31461 * 119.99412 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00129 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47149 * 90.00587 * 9 7 5 11 11 H 1.48505 * 109.46686 * 210.00007 * 9 7 5 12 12 H 1.48494 * 109.47187 * 330.00098 * 9 7 5 13 13 C 1.35241 * 119.01451 * 343.62758 * 4 3 2 14 14 O 1.21300 * 120.77679 * 179.71494 * 13 4 3 15 15 C 1.51092 * 118.44852 * 359.68685 * 13 4 3 16 16 H 1.09000 * 109.76508 * 149.08181 * 15 13 4 17 17 C 1.50703 * 109.61883 * 269.52648 * 15 13 4 18 18 C 1.33637 * 122.75345 * 124.11115 * 17 15 13 19 19 S 1.76195 * 107.92564 * 179.97438 * 18 17 15 20 20 C 1.70978 * 90.28289 * 359.97438 * 19 18 17 21 21 N 1.29022 * 110.16886 * 359.97438 * 20 19 18 22 22 O 1.35122 * 119.59963 * 180.02562 * 2 1 3 23 23 H 1.08999 * 109.47236 * 269.97826 * 1 2 3 24 24 H 1.08999 * 109.47024 * 29.97714 * 1 2 3 25 25 H 1.08999 * 109.47691 * 149.97486 * 1 2 3 26 26 H 0.97001 * 120.00050 * 179.97438 * 8 7 5 27 27 H 1.07997 * 126.03363 * 0.02562 * 18 17 15 28 28 H 1.08003 * 124.91744 * 179.73676 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1464 1.1254 0.0000 4 7 3.5485 1.1429 0.0005 5 6 4.2288 2.2825 -0.3324 6 1 5.3087 2.2872 -0.3289 7 6 3.5308 3.4331 -0.6735 8 7 2.2162 3.4278 -0.6762 9 14 4.4595 4.9890 -1.1273 10 1 4.7110 5.0064 -2.5907 11 1 3.6508 6.1760 -0.7499 12 1 5.7549 5.0215 -0.4020 13 6 4.2184 0.0165 0.3344 14 8 5.4312 -0.0056 0.3404 15 6 3.4209 -1.2135 0.7004 16 1 3.9734 -2.1091 0.4160 17 6 3.1650 -1.2273 2.1855 18 6 1.9369 -1.3033 2.7069 19 16 2.0912 -1.2918 4.4620 20 6 3.7919 -1.1866 4.3203 21 7 4.1343 -1.1673 3.0765 22 8 2.1744 -1.1749 -0.0005 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5142 26 1 1.7284 4.2317 -0.9142 27 1 1.0131 -1.3624 2.1506 28 1 4.4797 -1.1389 5.1516 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260264519.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:39 Heat of formation + Delta-G solvation = 23.669623 kcal Electronic energy + Delta-G solvation = -18440.646343 eV Core-core repulsion = 15392.515394 eV Total energy + Delta-G solvation = -3048.130949 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.37773 -40.39170 -39.16259 -37.01206 -34.53087 -33.43890 -32.01317 -29.94136 -28.83358 -26.79506 -25.77275 -23.43309 -21.52425 -20.71837 -19.94569 -19.50941 -17.83421 -17.39167 -17.12018 -16.87744 -16.24522 -15.72355 -15.64697 -15.27460 -15.03084 -14.38485 -14.19710 -13.85777 -13.63121 -13.21219 -13.10039 -13.08504 -12.62316 -12.55817 -12.31420 -12.13747 -11.59091 -10.84787 -10.69494 -10.59619 -10.40172 -9.82003 -9.52487 -8.25073 -6.05596 -0.35528 0.36154 0.57302 0.76073 1.34295 1.36732 1.48441 1.57139 1.73534 1.97278 2.19736 2.48741 3.00729 3.06439 3.24638 3.81440 3.85599 4.21523 4.29192 4.58171 4.67106 4.76966 4.86324 5.01302 5.25421 5.47141 5.50627 6.02937 6.53219 6.67632 6.94053 7.45721 7.84436 8.69189 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.022711 B = 0.007410 C = 0.006812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.589164 B = 3777.551075 C = 4109.630170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.198 3.802 3 N -0.233 5.233 4 N -0.288 5.288 5 C -0.369 4.369 6 H 0.090 0.910 7 C 0.010 3.990 8 N -0.829 5.829 9 Si 0.996 3.004 10 H -0.267 1.267 11 H -0.261 1.261 12 H -0.273 1.273 13 C 0.381 3.619 14 O -0.596 6.596 15 C 0.172 3.828 16 H 0.155 0.845 17 C 0.010 3.990 18 C -0.239 4.239 19 S 0.213 5.787 20 C 0.011 3.989 21 N -0.500 5.500 22 O -0.336 6.336 23 H 0.107 0.893 24 H 0.091 0.909 25 H 0.115 0.885 26 H 0.271 0.729 27 H 0.199 0.801 28 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.315 -8.127 8.816 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.028 4.028 3 N -0.059 5.059 4 N -0.094 5.094 5 C -0.495 4.495 6 H 0.108 0.892 7 C -0.198 4.198 8 N -0.461 5.461 9 Si 0.817 3.183 10 H -0.192 1.192 11 H -0.185 1.185 12 H -0.198 1.198 13 C 0.170 3.830 14 O -0.480 6.480 15 C 0.108 3.892 16 H 0.172 0.828 17 C -0.122 4.122 18 C -0.379 4.379 19 S 0.466 5.534 20 C -0.286 4.286 21 N -0.216 5.216 22 O -0.242 6.242 23 H 0.125 0.875 24 H 0.110 0.890 25 H 0.134 0.866 26 H 0.081 0.919 27 H 0.216 0.784 28 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -9.082 -7.339 9.413 14.998 hybrid contribution 1.506 0.136 -1.199 1.930 sum -7.576 -7.203 8.214 13.295 Atomic orbital electron populations 1.20658 0.79913 1.05874 1.05524 1.26970 0.98059 0.79367 0.98450 1.76122 0.90891 1.21987 1.16922 1.44787 1.00680 1.09909 1.54022 1.19650 0.91610 0.88223 1.50029 0.89234 1.26215 0.96714 1.01479 0.95428 1.70312 1.06313 1.29005 1.40515 0.84942 0.77984 0.76492 0.78845 1.19159 1.18506 1.19820 1.21462 0.89012 0.86299 0.86216 1.90492 1.14688 1.84137 1.58688 1.20853 0.82772 0.98086 0.87497 0.82769 1.20275 0.89603 1.06669 0.95688 1.27159 1.02211 1.09268 0.99234 1.83389 1.04372 1.65143 1.00518 1.29035 0.99977 1.02767 0.96832 1.65942 1.37241 1.16393 1.01975 1.86005 1.33106 1.35083 1.70005 0.87507 0.88987 0.86642 0.91887 0.78407 0.75098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.59 10.04 71.23 0.72 -0.88 15 2 C 0.20 7.98 6.13 88.46 0.54 8.53 15 3 N -0.23 -12.11 8.76 -165.45 -1.45 -13.56 15 4 N -0.29 -17.06 3.61 -306.27 -1.11 -18.17 15 5 C -0.37 -22.88 9.68 84.06 0.81 -22.07 15 6 H 0.09 5.82 7.23 -2.91 -0.02 5.80 15 7 C 0.01 0.55 5.49 84.89 0.47 1.02 15 8 N -0.83 -45.99 11.34 21.64 0.25 -45.75 15 9 Si 1.00 43.76 29.55 68.60 2.03 45.79 15 10 H -0.27 -11.27 7.11 99.48 0.71 -10.56 15 11 H -0.26 -10.57 7.11 99.48 0.71 -9.86 15 12 H -0.27 -12.15 7.11 99.48 0.71 -11.45 15 13 C 0.38 21.56 6.88 87.71 0.60 22.16 15 14 O -0.60 -37.54 16.83 -3.09 -0.05 -37.59 15 15 C 0.17 7.54 3.85 29.23 0.11 7.65 15 16 H 0.16 6.25 8.14 -2.39 -0.02 6.23 15 17 C 0.01 0.40 5.90 41.52 0.25 0.65 15 18 C -0.24 -7.06 10.00 66.78 0.67 -6.39 15 19 S 0.21 4.59 23.22 -56.49 -1.31 3.28 15 20 C 0.01 0.31 12.23 130.66 1.60 1.91 15 21 N -0.50 -19.50 10.41 -191.54 -1.99 -21.50 15 22 O -0.34 -13.28 9.50 -83.99 -0.80 -14.08 15 23 H 0.11 2.14 7.67 -2.39 -0.02 2.13 15 24 H 0.09 2.54 8.14 -2.39 -0.02 2.52 15 25 H 0.12 2.19 8.14 -2.39 -0.02 2.17 15 26 H 0.27 13.75 8.31 -92.71 -0.77 12.98 15 27 H 0.20 4.91 6.20 -2.91 -0.02 4.90 15 28 H 0.23 4.32 8.06 -2.91 -0.02 4.30 15 Total: -1.00 -82.38 266.64 2.53 -79.84 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 1.21 Total: 9.15 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 5.76 Total: 12.57 kcal Atomic # 7 Polarization: -94.67 SS G_CDS: -4.30 Total: -98.97 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -0.85 Total: -51.67 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.31 Total: 3.28 kcal Total: -82.38 2.53 -79.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260264519.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.514 kcal (2) G-P(sol) polarization free energy of solvation -82.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds