Wall clock time and date at job start Mon Mar 30 2020 04:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29437 * 119.59748 * 2 1 4 4 N 1.40225 * 120.31117 * 180.11837 * 3 2 1 5 5 C 1.36833 * 120.49026 * 196.10558 * 4 3 2 6 6 H 1.08003 * 120.00036 * 179.97438 * 5 4 3 7 7 C 1.38826 * 120.00214 * 359.97438 * 5 4 3 8 8 N 1.31463 * 120.00069 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00152 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46594 * 60.00633 * 9 7 5 11 11 H 1.48492 * 109.46981 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47030 * 300.00534 * 9 7 5 13 13 C 1.35245 * 119.01963 * 16.37682 * 4 3 2 14 14 O 1.21294 * 120.78067 * 180.29120 * 13 4 3 15 15 C 1.51099 * 118.44387 * 0.30928 * 13 4 3 16 16 H 1.08994 * 109.76173 * 210.92802 * 15 13 4 17 17 C 1.50698 * 109.61595 * 90.47898 * 15 13 4 18 18 C 1.33631 * 122.74795 * 125.62077 * 17 15 13 19 19 S 1.76202 * 107.92459 * 179.97438 * 18 17 15 20 20 C 1.70977 * 90.27960 * 0.27643 * 19 18 17 21 21 N 1.29027 * 110.16988 * 359.83560 * 20 19 18 22 22 O 1.35116 * 119.60142 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.47292 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47751 * 119.99879 * 1 2 3 25 25 H 1.08997 * 109.47303 * 240.00136 * 1 2 3 26 26 H 0.97000 * 120.00276 * 179.97438 * 8 7 5 27 27 H 1.07999 * 126.04345 * 0.03913 * 18 17 15 28 28 H 1.08003 * 124.91592 * 179.83940 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1463 1.1255 0.0000 4 7 3.5484 1.1429 -0.0025 5 6 4.2291 2.2840 0.3245 6 1 5.3091 2.2885 0.3204 7 6 3.5315 3.4360 0.6616 8 7 2.2169 3.4305 0.6671 9 14 4.4609 4.9940 1.1074 10 1 5.3079 5.4101 -0.0392 11 1 3.4926 6.0739 1.4257 12 1 5.3207 4.7361 2.2903 13 6 4.2180 0.0169 -0.3383 14 8 5.4307 -0.0053 -0.3459 15 6 3.4199 -1.2129 -0.7042 16 1 3.9728 -2.1086 -0.4212 17 6 3.1620 -1.2254 -2.1889 18 6 3.4870 -2.2596 -2.9703 19 16 3.0149 -1.8617 -4.6206 20 6 2.4349 -0.3410 -4.0969 21 7 2.6034 -0.2149 -2.8239 22 8 2.1744 -1.1748 -0.0005 23 1 -0.3634 1.0277 0.0005 24 1 -0.3634 -0.5138 -0.8899 25 1 -0.3634 -0.5138 0.8900 26 1 1.7295 4.2352 0.9030 27 1 3.9553 -3.1777 -2.6473 28 1 1.9916 0.4060 -4.7387 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260264526.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:41 Heat of formation + Delta-G solvation = 51.202031 kcal Electronic energy + Delta-G solvation = -18451.160862 eV Core-core repulsion = 15404.223807 eV Total energy + Delta-G solvation = -3046.937054 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.60300 -38.87181 -37.11454 -34.99241 -32.57135 -31.62426 -30.67661 -27.96894 -27.22134 -24.97340 -24.31495 -21.53331 -20.08935 -18.82044 -18.60865 -17.37273 -16.58065 -15.57662 -15.23325 -14.75517 -14.70427 -14.28522 -13.77424 -13.48607 -13.32348 -13.15894 -12.62938 -12.33050 -11.83493 -11.72092 -11.47838 -11.24511 -10.98703 -10.60716 -10.32580 -10.27821 -9.66495 -9.43404 -9.36166 -8.95560 -8.75140 -8.19908 -7.44197 -6.14944 -3.83816 0.80306 1.46804 1.76877 2.49135 3.05071 3.21893 3.25123 3.28082 3.77868 3.84706 4.08675 4.35150 4.42494 4.81075 5.07369 5.26687 5.31685 5.44957 5.70307 5.99611 6.03516 6.08992 6.20671 6.56724 7.03034 7.42371 7.55312 7.88559 8.16289 8.60773 9.06235 9.55223 9.87689 10.79004 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.023820 B = 0.007203 C = 0.006737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.222163 B = 3886.192909 C = 4155.272649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.184 3.816 3 N -0.172 5.172 4 N -0.254 5.254 5 C -0.322 4.322 6 H 0.115 0.885 7 C 0.046 3.954 8 N -0.809 5.809 9 Si 0.926 3.074 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.272 1.272 13 C 0.390 3.610 14 O -0.568 6.568 15 C 0.163 3.837 16 H 0.143 0.857 17 C 0.046 3.954 18 C -0.230 4.230 19 S 0.100 5.900 20 C 0.029 3.971 21 N -0.439 5.439 22 O -0.346 6.346 23 H 0.094 0.906 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.264 0.736 27 H 0.180 0.820 28 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.828 -8.964 -7.754 12.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.043 4.043 3 N 0.002 4.998 4 N -0.059 5.059 5 C -0.449 4.449 6 H 0.133 0.867 7 C -0.164 4.164 8 N -0.443 5.443 9 Si 0.752 3.248 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.197 1.197 13 C 0.178 3.822 14 O -0.451 6.451 15 C 0.099 3.901 16 H 0.160 0.840 17 C -0.087 4.087 18 C -0.370 4.370 19 S 0.352 5.648 20 C -0.270 4.270 21 N -0.152 5.152 22 O -0.252 6.252 23 H 0.113 0.887 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.198 0.802 28 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -4.604 -8.134 -8.322 12.515 hybrid contribution 0.870 0.154 0.784 1.182 sum -3.734 -7.980 -7.538 11.595 Atomic orbital electron populations 1.20203 0.85010 1.04302 1.01982 1.25535 0.95677 0.80053 1.03005 1.76178 0.91804 1.19271 1.12551 1.44539 0.99582 1.09466 1.52305 1.19588 0.91981 0.86158 1.47174 0.86749 1.25376 0.95611 0.99043 0.96360 1.70241 1.05363 1.27836 1.40817 0.86031 0.79019 0.80494 0.79277 1.19685 1.20607 1.19683 1.20541 0.88709 0.85331 0.87620 1.90538 1.12877 1.83399 1.58286 1.21277 0.84005 1.00350 0.84481 0.84000 1.20707 1.00268 0.89557 0.98121 1.26822 1.10120 1.04951 0.95070 1.83786 1.55655 1.15346 1.10036 1.28462 1.04144 1.00114 0.94294 1.66108 1.14002 1.27808 1.07234 1.85989 1.33648 1.35897 1.69716 0.88746 0.91380 0.90865 0.92583 0.80222 0.78380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.41 36.01 0.37 -0.57 15 2 C 0.18 4.11 6.79 -13.29 -0.09 4.02 15 3 N -0.17 -4.58 8.74 32.56 0.28 -4.29 15 4 N -0.25 -7.30 3.61 -10.82 -0.04 -7.34 15 5 C -0.32 -9.58 9.68 -15.10 -0.15 -9.72 15 6 H 0.11 3.45 7.23 -52.48 -0.38 3.07 15 7 C 0.05 1.28 5.49 -17.49 -0.10 1.19 15 8 N -0.81 -22.68 11.34 55.49 0.63 -22.05 15 9 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 15 10 H -0.27 -6.16 7.11 56.52 0.40 -5.75 15 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 13 C 0.39 10.52 6.85 -10.58 -0.07 10.45 15 14 O -0.57 -16.58 16.83 5.55 0.09 -16.48 15 15 C 0.16 3.49 3.72 -28.84 -0.11 3.38 15 16 H 0.14 2.57 8.03 -51.93 -0.42 2.15 15 17 C 0.05 0.89 5.56 -84.23 -0.47 0.42 15 18 C -0.23 -3.41 11.07 29.12 0.32 -3.09 15 19 S 0.10 1.22 23.22 -107.50 -2.50 -1.28 15 20 C 0.03 0.44 12.23 51.58 0.63 1.07 15 21 N -0.44 -8.75 9.70 -11.90 -0.12 -8.86 15 22 O -0.35 -7.43 10.14 -17.05 -0.17 -7.60 15 23 H 0.09 1.62 8.10 -51.93 -0.42 1.20 15 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 26 H 0.26 6.87 8.31 -40.82 -0.34 6.53 15 27 H 0.18 2.08 8.06 -52.49 -0.42 1.66 15 28 H 0.20 2.30 8.06 -52.48 -0.42 1.88 15 LS Contribution 270.34 15.07 4.07 4.07 Total: -1.00 -35.66 270.34 -4.46 -40.13 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -2.04 Total: 0.44 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 0.35 Total: 7.16 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.76 Total: -42.55 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.08 Total: -24.08 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.50 Total: -1.28 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -35.66 -4.46 -40.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260264526.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.328 kcal (2) G-P(sol) polarization free energy of solvation -35.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds