Wall clock time and date at job start Mon Mar 30 2020 04:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29437 * 119.59748 * 2 1 4 4 N 1.40225 * 120.31117 * 180.11837 * 3 2 1 5 5 C 1.36833 * 120.49026 * 196.10558 * 4 3 2 6 6 H 1.08003 * 120.00036 * 179.97438 * 5 4 3 7 7 C 1.38826 * 120.00214 * 359.97438 * 5 4 3 8 8 N 1.31463 * 120.00069 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00152 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46594 * 60.00633 * 9 7 5 11 11 H 1.48492 * 109.46981 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47030 * 300.00534 * 9 7 5 13 13 C 1.35245 * 119.01963 * 16.37682 * 4 3 2 14 14 O 1.21294 * 120.78067 * 180.29120 * 13 4 3 15 15 C 1.51099 * 118.44387 * 0.30928 * 13 4 3 16 16 H 1.08994 * 109.76173 * 210.92802 * 15 13 4 17 17 C 1.50698 * 109.61595 * 90.47898 * 15 13 4 18 18 C 1.33631 * 122.74795 * 125.62077 * 17 15 13 19 19 S 1.76202 * 107.92459 * 179.97438 * 18 17 15 20 20 C 1.70977 * 90.27960 * 0.27643 * 19 18 17 21 21 N 1.29027 * 110.16988 * 359.83560 * 20 19 18 22 22 O 1.35116 * 119.60142 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.47292 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47751 * 119.99879 * 1 2 3 25 25 H 1.08997 * 109.47303 * 240.00136 * 1 2 3 26 26 H 0.97000 * 120.00276 * 179.97438 * 8 7 5 27 27 H 1.07999 * 126.04345 * 0.03913 * 18 17 15 28 28 H 1.08003 * 124.91592 * 179.83940 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1463 1.1255 0.0000 4 7 3.5484 1.1429 -0.0025 5 6 4.2291 2.2840 0.3245 6 1 5.3091 2.2885 0.3204 7 6 3.5315 3.4360 0.6616 8 7 2.2169 3.4305 0.6671 9 14 4.4609 4.9940 1.1074 10 1 5.3079 5.4101 -0.0392 11 1 3.4926 6.0739 1.4257 12 1 5.3207 4.7361 2.2903 13 6 4.2180 0.0169 -0.3383 14 8 5.4307 -0.0053 -0.3459 15 6 3.4199 -1.2129 -0.7042 16 1 3.9728 -2.1086 -0.4212 17 6 3.1620 -1.2254 -2.1889 18 6 3.4870 -2.2596 -2.9703 19 16 3.0149 -1.8617 -4.6206 20 6 2.4349 -0.3410 -4.0969 21 7 2.6034 -0.2149 -2.8239 22 8 2.1744 -1.1748 -0.0005 23 1 -0.3634 1.0277 0.0005 24 1 -0.3634 -0.5138 -0.8899 25 1 -0.3634 -0.5138 0.8900 26 1 1.7295 4.2352 0.9030 27 1 3.9553 -3.1777 -2.6473 28 1 1.9916 0.4060 -4.7387 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260264526.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:41 Heat of formation + Delta-G solvation = 22.468463 kcal Electronic energy + Delta-G solvation = -18452.406843 eV Core-core repulsion = 15404.223807 eV Total energy + Delta-G solvation = -3048.183035 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.23467 -40.31519 -39.04155 -36.93346 -34.46806 -33.43402 -32.14082 -29.70878 -28.73435 -26.62108 -25.90605 -23.36341 -21.50858 -20.64130 -20.08061 -19.05466 -18.18946 -17.22207 -17.11324 -16.50189 -16.21973 -15.89927 -15.52532 -15.08741 -15.02806 -14.27209 -14.14366 -13.93369 -13.61269 -13.22285 -13.07795 -13.00106 -12.61548 -12.52624 -12.23751 -12.11443 -11.52243 -10.81740 -10.59509 -10.54131 -10.33321 -9.84683 -9.41382 -8.21149 -6.01621 -0.34667 0.39961 0.62995 0.78366 1.35643 1.39844 1.48275 1.61158 1.98332 2.04763 2.34447 2.59471 3.02704 3.08447 3.24148 3.80470 3.94009 4.32477 4.39271 4.53706 4.66771 4.78917 4.91098 5.02853 5.25105 5.51733 5.57133 6.06129 6.60378 6.72810 6.96962 7.52824 7.94034 8.72252 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.023820 B = 0.007203 C = 0.006737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.222163 B = 3886.192909 C = 4155.272649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.208 3.792 3 N -0.223 5.223 4 N -0.274 5.274 5 C -0.369 4.369 6 H 0.090 0.910 7 C 0.009 3.991 8 N -0.827 5.827 9 Si 0.997 3.003 10 H -0.271 1.271 11 H -0.261 1.261 12 H -0.269 1.269 13 C 0.370 3.630 14 O -0.615 6.615 15 C 0.169 3.831 16 H 0.170 0.830 17 C 0.005 3.995 18 C -0.224 4.224 19 S 0.212 5.788 20 C 0.007 3.993 21 N -0.499 5.499 22 O -0.345 6.345 23 H 0.089 0.911 24 H 0.096 0.904 25 H 0.105 0.895 26 H 0.270 0.730 27 H 0.212 0.788 28 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.141 -10.193 -9.210 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.019 4.019 3 N -0.049 5.049 4 N -0.078 5.078 5 C -0.496 4.496 6 H 0.108 0.892 7 C -0.199 4.199 8 N -0.459 5.459 9 Si 0.818 3.182 10 H -0.196 1.196 11 H -0.185 1.185 12 H -0.194 1.194 13 C 0.159 3.841 14 O -0.501 6.501 15 C 0.106 3.894 16 H 0.187 0.813 17 C -0.128 4.128 18 C -0.364 4.364 19 S 0.465 5.535 20 C -0.290 4.290 21 N -0.213 5.213 22 O -0.252 6.252 23 H 0.108 0.892 24 H 0.115 0.885 25 H 0.123 0.877 26 H 0.080 0.920 27 H 0.229 0.771 28 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -5.963 -9.373 -9.797 14.812 hybrid contribution 1.187 0.348 1.089 1.648 sum -4.776 -9.025 -8.708 13.420 Atomic orbital electron populations 1.20460 0.81037 1.04931 1.04820 1.26629 0.97626 0.79584 0.98065 1.76133 0.90651 1.21510 1.16581 1.44648 1.00825 1.09660 1.52641 1.19623 0.91586 0.88228 1.50120 0.89189 1.26250 0.96656 1.01583 0.95414 1.70352 1.06465 1.28900 1.40217 0.85004 0.77979 0.76380 0.78832 1.19581 1.18499 1.19361 1.21561 0.88896 0.86748 0.86891 1.90466 1.14670 1.84603 1.60394 1.21271 0.82921 0.98315 0.86911 0.81301 1.20336 1.03983 0.91553 0.96933 1.27298 1.07597 1.04733 0.96811 1.83397 1.52437 1.11456 1.06202 1.28882 1.04003 1.02637 0.93520 1.66046 1.16256 1.29438 1.09604 1.85972 1.33695 1.35244 1.70241 0.89230 0.88502 0.87689 0.92007 0.77148 0.76179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.71 10.41 71.24 0.74 -0.97 15 2 C 0.21 9.28 6.79 88.46 0.60 9.88 15 3 N -0.22 -12.21 8.74 -165.46 -1.45 -13.66 15 4 N -0.27 -16.53 3.61 -306.27 -1.11 -17.64 15 5 C -0.37 -23.21 9.68 84.05 0.81 -22.40 15 6 H 0.09 5.86 7.23 -2.91 -0.02 5.84 15 7 C 0.01 0.54 5.49 84.89 0.47 1.01 15 8 N -0.83 -47.33 11.34 21.64 0.25 -47.09 15 9 Si 1.00 44.43 29.55 68.60 2.03 46.45 15 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 11 H -0.26 -10.68 7.11 99.48 0.71 -9.98 15 12 H -0.27 -11.74 7.11 99.48 0.71 -11.04 15 13 C 0.37 20.90 6.85 87.71 0.60 21.50 15 14 O -0.61 -38.01 16.83 -3.07 -0.05 -38.06 15 15 C 0.17 7.29 3.72 29.23 0.11 7.40 15 16 H 0.17 6.06 8.03 -2.39 -0.02 6.04 15 17 C 0.00 0.17 5.56 41.52 0.23 0.40 15 18 C -0.22 -5.99 11.07 66.77 0.74 -5.25 15 19 S 0.21 4.34 23.22 -56.49 -1.31 3.03 15 20 C 0.01 0.21 12.23 130.65 1.60 1.80 15 21 N -0.50 -19.71 9.70 -191.56 -1.86 -21.56 15 22 O -0.34 -14.69 10.14 -83.92 -0.85 -15.55 15 23 H 0.09 2.97 8.10 -2.39 -0.02 2.95 15 24 H 0.10 2.57 8.14 -2.39 -0.02 2.55 15 25 H 0.10 2.71 8.14 -2.39 -0.02 2.69 15 26 H 0.27 14.17 8.31 -92.71 -0.77 13.40 15 27 H 0.21 4.04 8.06 -2.91 -0.02 4.01 15 28 H 0.22 4.71 8.06 -2.91 -0.02 4.69 15 Total: -1.00 -83.51 270.34 2.75 -80.76 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 1.20 Total: 9.95 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 5.90 Total: 13.37 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -4.16 Total: -99.95 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -0.90 Total: -53.61 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -1.31 Total: 3.03 kcal Total: -83.51 2.75 -80.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260264526.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.224 kcal (2) G-P(sol) polarization free energy of solvation -83.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds