Wall clock time and date at job start Mon Mar 30 2020 05:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33410 * 122.71542 * 2 1 4 4 S 1.76172 * 108.06788 * 179.88699 * 3 2 1 5 5 C 1.70969 * 90.34116 * 0.31625 * 4 3 2 6 6 N 1.39009 * 124.94259 * 179.79339 * 5 4 3 7 7 C 1.47051 * 125.40967 * 359.74760 * 6 5 4 8 8 C 1.54110 * 103.86073 * 179.86686 * 7 6 5 9 9 N 1.47048 * 103.85987 * 0.37206 * 8 7 6 10 10 C 1.46508 * 125.41056 * 179.75347 * 9 8 7 11 11 C 1.50705 * 109.46799 * 270.03006 * 10 9 8 12 12 H 1.08000 * 120.00238 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99596 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00010 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99887 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47188 * 90.00285 * 15 13 11 17 17 H 1.48504 * 109.47257 * 210.00170 * 15 13 11 18 18 H 1.48506 * 109.47368 * 330.00321 * 15 13 11 19 19 C 1.33949 * 109.18500 * 359.75599 * 9 8 7 20 20 O 1.21583 * 123.04653 * 179.97438 * 19 9 8 21 21 N 1.29619 * 110.11090 * 359.81525 * 5 4 3 22 22 H 1.09001 * 109.46953 * 269.70751 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.70349 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.70979 * 1 2 3 25 25 H 1.08001 * 125.96253 * 359.97438 * 3 2 1 26 26 H 1.08997 * 110.54840 * 298.59048 * 7 6 5 27 27 H 1.09001 * 110.54999 * 61.40422 * 7 6 5 28 28 H 1.09002 * 110.75410 * 241.67729 * 8 7 6 29 29 H 1.08997 * 110.46025 * 118.93043 * 8 7 6 30 30 H 1.09001 * 109.46611 * 30.02412 * 10 9 8 31 31 H 1.08996 * 109.47136 * 150.02861 * 10 9 8 32 32 H 0.97001 * 119.99823 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2281 1.1225 0.0000 4 16 3.9326 0.6770 0.0033 5 6 3.5101 -0.9797 -0.0051 6 7 4.4175 -2.0327 -0.0109 7 6 5.8816 -1.8958 -0.0161 8 6 6.3886 -3.3511 -0.0179 9 7 5.1562 -4.1534 -0.0228 10 6 5.0962 -5.6172 -0.0311 11 6 5.0767 -6.1109 -1.4549 12 1 5.1056 -5.4050 -2.2717 13 6 5.0219 -7.4639 -1.7146 14 7 4.9872 -8.3236 -0.7198 15 14 4.9970 -8.0760 -3.4792 16 1 6.3894 -8.2949 -3.9470 17 1 4.2446 -9.3544 -3.5492 18 1 4.3373 -7.0653 -4.3445 19 6 4.0971 -3.3333 -0.0184 20 8 2.9489 -3.7332 -0.0214 21 7 2.2206 -1.1108 -0.0056 22 1 -0.3633 -0.0052 1.0277 23 1 -0.3634 0.8926 -0.5092 24 1 -0.3633 -0.8874 -0.5183 25 1 1.8354 2.1285 -0.0004 26 1 6.2137 -1.3718 -0.9124 27 1 6.2205 -1.3758 0.8799 28 1 6.9755 -3.5568 0.8773 29 1 6.9772 -3.5485 -0.9138 30 1 5.9703 -6.0195 0.4810 31 1 4.1918 -5.9467 0.4801 32 1 4.9483 -9.2754 -0.9026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260325237.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:39 Heat of formation + Delta-G solvation = 45.770164 kcal Electronic energy + Delta-G solvation = -17855.539196 eV Core-core repulsion = 14944.199693 eV Total energy + Delta-G solvation = -2911.339503 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.91506 -39.36421 -35.79624 -34.85659 -32.76507 -31.20643 -29.01779 -27.48273 -27.31043 -24.77485 -23.38070 -22.17086 -20.39012 -18.64897 -18.07158 -16.93439 -16.61158 -16.10928 -15.53147 -14.70234 -14.69537 -14.25415 -13.94060 -13.40533 -13.34565 -13.05980 -13.00117 -12.50849 -12.32302 -12.15570 -11.88515 -11.34300 -11.26201 -10.95175 -10.67356 -10.18898 -10.09556 -9.76271 -9.69738 -9.14657 -9.11557 -8.49544 -8.07165 -7.65597 -6.10496 -4.16110 0.89110 1.05300 1.74263 2.54804 2.93752 3.27985 3.35172 3.40424 3.84347 4.08351 4.41715 4.51487 4.65560 4.98396 5.17835 5.19694 5.24167 5.32751 5.53029 5.62988 5.71857 5.81720 5.90518 6.01258 6.24849 6.78307 7.10453 7.33117 7.51129 7.85919 7.97425 8.12968 8.26336 8.84456 9.15961 9.50313 10.97235 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.028377 B = 0.005006 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.466069 B = 5592.492641 C = 6067.646871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.108 3.892 3 C -0.300 4.300 4 S 0.098 5.902 5 C 0.333 3.667 6 N -0.547 5.547 7 C 0.088 3.912 8 C 0.097 3.903 9 N -0.605 5.605 10 C 0.277 3.723 11 C -0.533 4.533 12 H 0.059 0.941 13 C 0.063 3.937 14 N -0.894 5.894 15 Si 0.901 3.099 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.274 1.274 19 C 0.689 3.311 20 O -0.530 6.530 21 N -0.493 5.493 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.176 0.824 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.544 19.326 2.580 19.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.024 4.024 3 C -0.440 4.440 4 S 0.348 5.652 5 C -0.036 4.036 6 N -0.281 5.281 7 C -0.035 4.035 8 C -0.028 4.028 9 N -0.342 5.342 10 C 0.160 3.840 11 C -0.572 4.572 12 H 0.077 0.923 13 C -0.139 4.139 14 N -0.533 5.533 15 Si 0.728 3.272 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.199 1.199 19 C 0.388 3.612 20 O -0.402 6.402 21 N -0.215 5.215 22 H 0.094 0.906 23 H 0.092 0.908 24 H 0.097 0.903 25 H 0.193 0.807 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.630 18.689 2.630 18.944 hybrid contribution -0.663 -0.391 -0.998 1.261 sum 0.967 18.299 1.632 18.397 Atomic orbital electron populations 1.20377 0.87114 1.03354 1.02988 1.20098 0.98065 0.85735 0.98495 1.26353 0.93321 1.03540 1.20795 1.83663 1.08868 0.99313 1.73364 1.22950 0.89700 0.90944 0.99975 1.44352 1.05805 1.04241 1.73705 1.22720 0.77606 0.99557 1.03616 1.22262 0.90031 0.86775 1.03702 1.47829 1.03310 1.07894 1.75176 1.19221 0.98791 0.68278 0.97713 1.21463 1.51572 0.91930 0.92264 0.92273 1.24923 0.94823 0.96488 0.97707 1.69923 1.49981 1.02375 1.30981 0.86449 0.78003 0.78322 0.84391 1.20535 1.20974 1.19858 1.15935 0.86172 0.79798 0.79265 1.90970 1.18762 1.76185 1.54241 1.66294 1.02378 1.30761 1.22064 0.90556 0.90765 0.90259 0.80677 0.89199 0.89271 0.89944 0.89424 0.94116 0.93604 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.31 36.01 0.37 -0.54 16 2 C 0.11 1.62 6.74 -84.20 -0.57 1.05 16 3 C -0.30 -3.60 11.10 29.04 0.32 -3.28 16 4 S 0.10 1.20 22.71 -107.50 -2.44 -1.24 16 5 C 0.33 5.85 7.93 -87.35 -0.69 5.16 16 6 N -0.55 -10.04 3.13 -122.21 -0.38 -10.42 16 7 C 0.09 1.12 7.18 -3.16 -0.02 1.10 16 8 C 0.10 1.45 7.68 -3.16 -0.02 1.43 16 9 N -0.60 -13.28 2.94 -180.19 -0.53 -13.81 16 10 C 0.28 7.23 5.75 -5.19 -0.03 7.20 16 11 C -0.53 -15.10 9.39 -34.44 -0.32 -15.43 16 12 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 13 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 15 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 19 C 0.69 16.07 8.25 -88.40 -0.73 15.34 16 20 O -0.53 -14.91 16.29 5.29 0.09 -14.83 16 21 N -0.49 -9.59 9.43 -11.27 -0.11 -9.70 16 22 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.07 0.63 8.12 -51.93 -0.42 0.20 16 24 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.18 1.49 8.06 -52.49 -0.42 1.07 16 26 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.05 1.35 7.91 -51.93 -0.41 0.93 16 32 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 295.63 15.07 4.46 4.46 Total: -1.00 -36.17 295.63 -8.75 -44.93 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: -3.76 Total: -4.41 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: -1.79 Total: 13.73 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.28 Total: -59.44 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: 0.09 Total: -14.83 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.44 Total: -1.24 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -36.17 -8.75 -44.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260325237.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.696 kcal (2) G-P(sol) polarization free energy of solvation -36.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds