Wall clock time and date at job start Mon Mar 30 2020 05:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33410 * 122.71542 * 2 1 4 4 S 1.76172 * 108.06788 * 179.88699 * 3 2 1 5 5 C 1.70969 * 90.34116 * 0.31625 * 4 3 2 6 6 N 1.39009 * 124.94259 * 179.79339 * 5 4 3 7 7 C 1.47051 * 125.40967 * 359.74760 * 6 5 4 8 8 C 1.54110 * 103.86073 * 179.86686 * 7 6 5 9 9 N 1.47048 * 103.85987 * 0.37206 * 8 7 6 10 10 C 1.46508 * 125.41056 * 179.75347 * 9 8 7 11 11 C 1.50705 * 109.46799 * 270.03006 * 10 9 8 12 12 H 1.08000 * 120.00238 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99596 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00010 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99887 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47188 * 90.00285 * 15 13 11 17 17 H 1.48504 * 109.47257 * 210.00170 * 15 13 11 18 18 H 1.48506 * 109.47368 * 330.00321 * 15 13 11 19 19 C 1.33949 * 109.18500 * 359.75599 * 9 8 7 20 20 O 1.21583 * 123.04653 * 179.97438 * 19 9 8 21 21 N 1.29619 * 110.11090 * 359.81525 * 5 4 3 22 22 H 1.09001 * 109.46953 * 269.70751 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.70349 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.70979 * 1 2 3 25 25 H 1.08001 * 125.96253 * 359.97438 * 3 2 1 26 26 H 1.08997 * 110.54840 * 298.59048 * 7 6 5 27 27 H 1.09001 * 110.54999 * 61.40422 * 7 6 5 28 28 H 1.09002 * 110.75410 * 241.67729 * 8 7 6 29 29 H 1.08997 * 110.46025 * 118.93043 * 8 7 6 30 30 H 1.09001 * 109.46611 * 30.02412 * 10 9 8 31 31 H 1.08996 * 109.47136 * 150.02861 * 10 9 8 32 32 H 0.97001 * 119.99823 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2281 1.1225 0.0000 4 16 3.9326 0.6770 0.0033 5 6 3.5101 -0.9797 -0.0051 6 7 4.4175 -2.0327 -0.0109 7 6 5.8816 -1.8958 -0.0161 8 6 6.3886 -3.3511 -0.0179 9 7 5.1562 -4.1534 -0.0228 10 6 5.0962 -5.6172 -0.0311 11 6 5.0767 -6.1109 -1.4549 12 1 5.1056 -5.4050 -2.2717 13 6 5.0219 -7.4639 -1.7146 14 7 4.9872 -8.3236 -0.7198 15 14 4.9970 -8.0760 -3.4792 16 1 6.3894 -8.2949 -3.9470 17 1 4.2446 -9.3544 -3.5492 18 1 4.3373 -7.0653 -4.3445 19 6 4.0971 -3.3333 -0.0184 20 8 2.9489 -3.7332 -0.0214 21 7 2.2206 -1.1108 -0.0056 22 1 -0.3633 -0.0052 1.0277 23 1 -0.3634 0.8926 -0.5092 24 1 -0.3633 -0.8874 -0.5183 25 1 1.8354 2.1285 -0.0004 26 1 6.2137 -1.3718 -0.9124 27 1 6.2205 -1.3758 0.8799 28 1 6.9755 -3.5568 0.8773 29 1 6.9772 -3.5485 -0.9138 30 1 5.9703 -6.0195 0.4810 31 1 4.1918 -5.9467 0.4801 32 1 4.9483 -9.2754 -0.9026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260325237.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:39 Heat of formation + Delta-G solvation = 20.583146 kcal Electronic energy + Delta-G solvation = -17856.631387 eV Core-core repulsion = 14944.199693 eV Total energy + Delta-G solvation = -2912.431694 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.36184 -40.56219 -37.50352 -36.47383 -34.71563 -32.48586 -30.43470 -29.13693 -28.43692 -26.32491 -24.91251 -23.68441 -21.72878 -19.91690 -19.36627 -18.84119 -17.86657 -17.68826 -17.20987 -16.46942 -15.87744 -15.65356 -15.30468 -14.88572 -14.83039 -14.55148 -14.13830 -13.85272 -13.55683 -13.39763 -13.28216 -13.06040 -12.83275 -12.60525 -12.26965 -12.22185 -11.77750 -11.41425 -11.27547 -10.67911 -10.45096 -10.23331 -9.66331 -8.96854 -8.26557 -6.42503 -0.22306 -0.05853 0.71076 1.29035 1.35627 1.39035 1.49595 1.72928 2.24042 2.36663 2.69531 3.02762 3.35726 3.55101 4.03108 4.10771 4.31291 4.38018 4.46390 4.70881 4.76028 4.82639 4.83457 4.88801 5.06093 5.15004 5.30348 5.52917 5.59802 5.84244 5.98136 6.50144 6.65025 6.99076 7.24624 7.49312 8.79905 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.028377 B = 0.005006 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.466069 B = 5592.492641 C = 6067.646871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.067 3.933 3 C -0.277 4.277 4 S 0.204 5.796 5 C 0.275 3.725 6 N -0.550 5.550 7 C 0.091 3.909 8 C 0.089 3.911 9 N -0.617 5.617 10 C 0.293 3.707 11 C -0.551 4.551 12 H 0.050 0.950 13 C 0.013 3.987 14 N -0.925 5.925 15 Si 0.970 3.030 16 H -0.257 1.257 17 H -0.279 1.279 18 H -0.279 1.279 19 C 0.679 3.321 20 O -0.601 6.601 21 N -0.552 5.552 22 H 0.083 0.917 23 H 0.109 0.891 24 H 0.051 0.949 25 H 0.219 0.781 26 H 0.121 0.879 27 H 0.130 0.870 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.044 0.956 31 H -0.004 1.004 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.284 22.621 1.790 22.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.064 4.064 3 C -0.417 4.417 4 S 0.454 5.546 5 C -0.091 4.091 6 N -0.284 5.284 7 C -0.030 4.030 8 C -0.033 4.033 9 N -0.354 5.354 10 C 0.174 3.826 11 C -0.590 4.590 12 H 0.069 0.931 13 C -0.187 4.187 14 N -0.564 5.564 15 Si 0.794 3.206 16 H -0.182 1.182 17 H -0.204 1.204 18 H -0.204 1.204 19 C 0.378 3.622 20 O -0.478 6.478 21 N -0.275 5.275 22 H 0.101 0.899 23 H 0.128 0.872 24 H 0.070 0.930 25 H 0.236 0.764 26 H 0.139 0.861 27 H 0.148 0.852 28 H 0.129 0.871 29 H 0.116 0.884 30 H 0.062 0.938 31 H 0.015 0.985 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.441 22.070 1.849 22.413 hybrid contribution -1.221 -1.227 -0.701 1.867 sum 2.221 20.844 1.149 20.993 Atomic orbital electron populations 1.20449 0.85701 1.03763 1.03588 1.20499 0.99349 0.85704 1.00864 1.27026 0.93725 1.04572 1.16341 1.83178 1.07501 0.93323 1.70601 1.23354 0.89764 0.93269 1.02727 1.44230 1.07986 1.02628 1.73506 1.23131 0.74329 0.98354 1.07160 1.22698 0.87697 0.87253 1.05629 1.47646 1.05946 1.06891 1.74867 1.18664 0.96418 0.71272 0.96294 1.21687 1.52036 0.92350 0.92897 0.93138 1.25815 0.94103 0.96581 1.02167 1.70030 1.50384 1.02815 1.33162 0.85392 0.79007 0.77408 0.78831 1.18198 1.20446 1.20420 1.16281 0.85353 0.81746 0.78773 1.90889 1.21492 1.78108 1.57327 1.66248 1.04437 1.34315 1.22540 0.89854 0.87208 0.92951 0.76423 0.86073 0.85241 0.87113 0.88426 0.93781 0.98541 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.71 10.31 71.24 0.73 -0.98 16 2 C 0.07 1.94 6.74 41.44 0.28 2.22 16 3 C -0.28 -5.61 11.10 66.73 0.74 -4.86 16 4 S 0.20 4.17 22.71 -56.49 -1.28 2.89 16 5 C 0.28 9.48 7.93 179.20 1.42 10.90 16 6 N -0.55 -20.06 3.13 -659.28 -2.06 -22.12 16 7 C 0.09 2.05 7.18 86.65 0.62 2.68 16 8 C 0.09 2.56 7.68 86.65 0.67 3.22 16 9 N -0.62 -28.04 2.94 -842.71 -2.48 -30.52 16 10 C 0.29 16.14 5.75 85.63 0.49 16.63 16 11 C -0.55 -32.32 9.39 25.60 0.24 -32.08 16 12 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 13 C 0.01 0.75 5.46 84.65 0.46 1.22 16 14 N -0.92 -55.70 13.29 21.45 0.28 -55.42 16 15 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 16 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 19 C 0.68 33.21 8.25 179.57 1.48 34.69 16 20 O -0.60 -36.52 16.29 -3.98 -0.06 -36.59 16 21 N -0.55 -22.00 9.43 -189.58 -1.79 -23.79 16 22 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.11 1.59 8.12 -2.39 -0.02 1.57 16 24 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.22 2.40 8.06 -2.91 -0.02 2.38 16 26 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.04 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.00 -0.22 7.91 -2.39 -0.02 -0.24 16 32 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -87.00 295.63 2.91 -84.09 By element: Atomic # 1 Polarization: -0.62 SS G_CDS: 1.13 Total: 0.51 kcal Atomic # 6 Polarization: 26.48 SS G_CDS: 7.14 Total: 33.62 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -6.04 Total: -131.84 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.06 Total: -36.59 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: 4.17 SS G_CDS: -1.28 Total: 2.89 kcal Total: -87.00 2.91 -84.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260325237.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.674 kcal (2) G-P(sol) polarization free energy of solvation -86.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds