Wall clock time and date at job start Mon Mar 30 2020 04:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29031 * 124.91562 * 2 1 4 4 C 1.31779 * 117.12329 * 180.02562 * 3 2 1 5 5 C 1.50697 * 122.74689 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.61277 * 64.67377 * 5 4 3 7 7 O 1.43103 * 109.61377 * 185.02567 * 5 4 3 8 8 C 1.35112 * 116.95317 * 74.34778 * 7 5 4 9 9 N 1.29446 * 120.79734 * 33.43205 * 8 7 5 10 10 N 1.40224 * 120.31097 * 359.92666 * 9 8 7 11 11 C 1.36834 * 120.48763 * 163.60392 * 10 9 8 12 12 H 1.08004 * 119.99811 * 186.92696 * 11 10 9 13 13 C 1.38829 * 120.00254 * 6.65039 * 11 10 9 14 14 N 1.31457 * 119.99753 * 353.80144 * 13 11 10 15 15 Si 1.86797 * 119.99947 * 173.80432 * 13 11 10 16 16 H 1.48504 * 109.47326 * 94.98118 * 15 13 11 17 17 H 1.48503 * 109.47108 * 214.98156 * 15 13 11 18 18 H 1.48499 * 109.47283 * 334.97969 * 15 13 11 19 19 C 1.35242 * 119.01650 * 343.87531 * 10 9 8 20 20 O 1.21312 * 120.77503 * 179.43671 * 19 10 9 21 21 C 1.33632 * 114.50146 * 0.23164 * 4 3 2 22 22 S 1.70972 * 124.91696 * 180.02562 * 2 1 3 23 23 H 1.08999 * 109.47280 * 90.00035 * 1 2 3 24 24 H 1.09000 * 109.47017 * 210.00251 * 1 2 3 25 25 H 1.09002 * 109.46820 * 329.99918 * 1 2 3 26 26 H 1.07997 * 119.60681 * 213.45741 * 8 7 5 27 27 H 0.97004 * 120.00092 * 180.02562 * 14 13 11 28 28 H 1.08002 * 126.03840 * 179.77146 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 4.5307 2.0246 -0.0012 6 1 4.4351 2.5883 0.9269 7 8 5.8633 1.5169 -0.1197 8 6 6.2396 1.0622 -1.3351 9 7 5.7863 1.6096 -2.4170 10 7 4.8921 2.6872 -2.3438 11 6 4.6684 3.4792 -3.4371 12 1 4.0668 4.3712 -3.3437 13 6 5.2196 3.1391 -4.6651 14 7 6.0540 2.1272 -4.7534 15 14 4.7754 4.1195 -6.1918 16 1 5.8003 5.1694 -6.4214 17 1 4.7252 3.2116 -7.3659 18 1 3.4477 4.7569 -6.0019 19 6 4.2584 2.9356 -1.1752 20 8 3.4861 3.8656 -1.0734 21 6 3.9354 -0.4005 -0.0059 22 16 2.4857 -1.4019 -0.0006 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 6.9265 0.2317 -1.4049 27 1 6.4394 1.8898 -5.6113 28 1 4.9545 -0.7580 -0.0107 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260335053.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:34 Heat of formation + Delta-G solvation = 49.245688 kcal Electronic energy + Delta-G solvation = -18189.477876 eV Core-core repulsion = 15142.455988 eV Total energy + Delta-G solvation = -3047.021888 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.70259 -39.01918 -37.18303 -35.10209 -32.52253 -32.20609 -30.34747 -28.63125 -27.76027 -24.81497 -23.07658 -22.54061 -19.83172 -19.18961 -18.32201 -17.80459 -16.09129 -15.96999 -15.41440 -15.07744 -14.59406 -14.42863 -13.91268 -13.83873 -13.50383 -13.14976 -12.76631 -12.27714 -12.13936 -11.91203 -11.56811 -11.48636 -11.08729 -10.67414 -10.46326 -10.34489 -9.72410 -9.43932 -9.26046 -8.97093 -8.78671 -8.21754 -7.64882 -6.22949 -3.92305 0.83710 1.46732 1.79269 2.50951 2.89299 3.14367 3.22545 3.28162 3.52160 3.76910 3.96872 4.28117 4.43281 4.78085 4.96634 5.22698 5.31913 5.38302 5.43610 5.45791 5.72322 5.84667 6.18841 6.28048 6.83022 7.24834 7.49391 7.91449 8.08280 8.50120 8.99279 9.43750 9.73516 10.72501 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.023197 B = 0.006895 C = 0.006444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.787102 B = 4059.816631 C = 4344.219084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.048 3.952 3 N -0.446 5.446 4 C 0.049 3.951 5 C 0.163 3.837 6 H 0.145 0.855 7 O -0.349 6.349 8 C 0.145 3.855 9 N -0.184 5.184 10 N -0.268 5.268 11 C -0.324 4.324 12 H 0.117 0.883 13 C 0.045 3.955 14 N -0.814 5.814 15 Si 0.925 3.075 16 H -0.276 1.276 17 H -0.280 1.280 18 H -0.267 1.267 19 C 0.405 3.595 20 O -0.543 6.543 21 C -0.234 4.234 22 S 0.105 5.895 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.212 0.788 27 H 0.264 0.736 28 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.175 -9.590 7.957 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.231 4.231 3 N -0.162 5.162 4 C -0.083 4.083 5 C 0.098 3.902 6 H 0.162 0.838 7 O -0.255 6.255 8 C -0.101 4.101 9 N -0.009 5.009 10 N -0.077 5.077 11 C -0.451 4.451 12 H 0.135 0.865 13 C -0.164 4.164 14 N -0.448 5.448 15 Si 0.750 3.250 16 H -0.201 1.201 17 H -0.205 1.205 18 H -0.191 1.191 19 C 0.192 3.808 20 O -0.423 6.423 21 C -0.373 4.373 22 S 0.359 5.641 23 H 0.104 0.896 24 H 0.098 0.902 25 H 0.108 0.892 26 H 0.228 0.772 27 H 0.074 0.926 28 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.818 -9.736 7.183 13.023 hybrid contribution 0.432 1.014 -0.210 1.122 sum -4.387 -8.722 6.974 11.998 Atomic orbital electron populations 1.20425 0.85132 1.03958 1.03988 1.27069 1.01811 0.90493 1.03713 1.65953 1.03961 1.31360 1.14877 1.20518 0.90604 0.94193 1.03029 1.21053 0.78513 0.89791 1.00823 0.83766 1.86035 1.28224 1.77662 1.33600 1.27441 1.02759 1.01030 0.78897 1.76143 1.03139 0.99578 1.22011 1.44691 1.31412 1.21989 1.09609 1.19657 1.33891 1.06806 0.84728 0.86525 1.25378 0.95514 0.96631 0.98909 1.70232 1.24853 1.24870 1.24815 0.85950 0.79373 0.79166 0.80467 1.20133 1.20496 1.19100 1.20559 0.86706 0.88916 0.84596 1.90569 1.37833 1.31597 1.82263 1.26738 1.03310 0.95307 1.11918 1.83697 0.98021 1.13226 1.69184 0.89556 0.90248 0.89180 0.77193 0.92570 0.80066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.46 36.01 0.38 -0.45 15 2 C 0.05 0.75 7.39 -13.45 -0.10 0.65 15 3 N -0.45 -8.83 10.42 -8.06 -0.08 -8.92 15 4 C 0.05 0.96 5.92 -84.23 -0.50 0.46 15 5 C 0.16 3.44 3.82 -28.85 -0.11 3.33 15 6 H 0.15 2.78 8.14 -51.93 -0.42 2.35 15 7 O -0.35 -6.80 9.54 -17.04 -0.16 -6.96 15 8 C 0.14 2.89 10.73 51.76 0.56 3.44 15 9 N -0.18 -4.65 8.89 29.43 0.26 -4.39 15 10 N -0.27 -7.51 3.61 -10.82 -0.04 -7.55 15 11 C -0.32 -9.48 9.65 -15.10 -0.15 -9.62 15 12 H 0.12 3.48 7.26 -52.48 -0.38 3.09 15 13 C 0.05 1.24 5.48 -17.49 -0.10 1.15 15 14 N -0.81 -22.50 11.37 55.49 0.63 -21.87 15 15 Si 0.93 20.92 29.56 -169.99 -5.02 15.90 15 16 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 19 C 0.41 10.72 6.90 -10.59 -0.07 10.65 15 20 O -0.54 -15.78 16.84 5.53 0.09 -15.69 15 21 C -0.23 -3.79 10.00 29.12 0.29 -3.50 15 22 S 0.10 1.40 23.18 -107.50 -2.49 -1.09 15 23 H 0.09 0.91 8.14 -51.93 -0.42 0.49 15 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 15 25 H 0.09 0.99 8.14 -51.93 -0.42 0.57 15 26 H 0.21 3.10 8.06 -52.49 -0.42 2.68 15 27 H 0.26 6.78 8.31 -40.82 -0.34 6.44 15 28 H 0.18 2.55 6.97 -52.49 -0.37 2.19 15 LS Contribution 268.27 15.07 4.04 4.04 Total: -1.00 -34.91 268.27 -4.57 -39.48 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -2.00 Total: 0.95 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 0.20 Total: 6.10 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.77 Total: -42.73 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.07 Total: -22.65 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.49 Total: -1.09 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -34.91 -4.57 -39.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260335053.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.724 kcal (2) G-P(sol) polarization free energy of solvation -34.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds