Wall clock time and date at job start Mon Mar 30 2020 04:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29031 * 124.91562 * 2 1 4 4 C 1.31779 * 117.12329 * 180.02562 * 3 2 1 5 5 C 1.50697 * 122.74689 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.61277 * 64.67377 * 5 4 3 7 7 O 1.43103 * 109.61377 * 185.02567 * 5 4 3 8 8 C 1.35112 * 116.95317 * 74.34778 * 7 5 4 9 9 N 1.29446 * 120.79734 * 33.43205 * 8 7 5 10 10 N 1.40224 * 120.31097 * 359.92666 * 9 8 7 11 11 C 1.36834 * 120.48763 * 163.60392 * 10 9 8 12 12 H 1.08004 * 119.99811 * 186.92696 * 11 10 9 13 13 C 1.38829 * 120.00254 * 6.65039 * 11 10 9 14 14 N 1.31457 * 119.99753 * 353.80144 * 13 11 10 15 15 Si 1.86797 * 119.99947 * 173.80432 * 13 11 10 16 16 H 1.48504 * 109.47326 * 94.98118 * 15 13 11 17 17 H 1.48503 * 109.47108 * 214.98156 * 15 13 11 18 18 H 1.48499 * 109.47283 * 334.97969 * 15 13 11 19 19 C 1.35242 * 119.01650 * 343.87531 * 10 9 8 20 20 O 1.21312 * 120.77503 * 179.43671 * 19 10 9 21 21 C 1.33632 * 114.50146 * 0.23164 * 4 3 2 22 22 S 1.70972 * 124.91696 * 180.02562 * 2 1 3 23 23 H 1.08999 * 109.47280 * 90.00035 * 1 2 3 24 24 H 1.09000 * 109.47017 * 210.00251 * 1 2 3 25 25 H 1.09002 * 109.46820 * 329.99918 * 1 2 3 26 26 H 1.07997 * 119.60681 * 213.45741 * 8 7 5 27 27 H 0.97004 * 120.00092 * 180.02562 * 14 13 11 28 28 H 1.08002 * 126.03840 * 179.77146 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 4.5307 2.0246 -0.0012 6 1 4.4351 2.5883 0.9269 7 8 5.8633 1.5169 -0.1197 8 6 6.2396 1.0622 -1.3351 9 7 5.7863 1.6096 -2.4170 10 7 4.8921 2.6872 -2.3438 11 6 4.6684 3.4792 -3.4371 12 1 4.0668 4.3712 -3.3437 13 6 5.2196 3.1391 -4.6651 14 7 6.0540 2.1272 -4.7534 15 14 4.7754 4.1195 -6.1918 16 1 5.8003 5.1694 -6.4214 17 1 4.7252 3.2116 -7.3659 18 1 3.4477 4.7569 -6.0019 19 6 4.2584 2.9356 -1.1752 20 8 3.4861 3.8656 -1.0734 21 6 3.9354 -0.4005 -0.0059 22 16 2.4857 -1.4019 -0.0006 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 6.9265 0.2317 -1.4049 27 1 6.4394 1.8898 -5.6113 28 1 4.9545 -0.7580 -0.0107 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260335053.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:34 Heat of formation + Delta-G solvation = 21.248948 kcal Electronic energy + Delta-G solvation = -18190.691906 eV Core-core repulsion = 15142.455988 eV Total energy + Delta-G solvation = -3048.235918 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.33647 -40.46257 -39.06979 -37.01133 -34.35544 -33.60689 -32.17820 -30.13618 -29.11047 -26.75149 -24.63102 -24.10426 -21.28243 -20.85970 -19.93753 -19.42780 -17.83243 -17.72710 -17.02637 -16.80421 -16.12408 -15.80186 -15.70902 -15.36185 -15.20829 -14.46363 -14.12628 -13.72473 -13.53573 -13.40437 -13.11401 -13.05627 -12.70874 -12.67326 -12.33555 -12.13755 -11.56470 -10.90839 -10.67809 -10.47622 -10.40873 -9.71534 -9.60234 -8.26272 -6.06170 -0.37432 0.32812 0.55067 0.78790 1.33976 1.37397 1.48844 1.55731 1.73440 2.00069 2.25898 2.55659 2.98812 3.06891 3.22612 3.72284 3.86309 4.19296 4.28823 4.49899 4.62039 4.72242 4.84838 5.10898 5.11502 5.42147 5.44142 6.01713 6.52531 6.71110 6.94280 7.45232 7.83537 8.68660 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.023197 B = 0.006895 C = 0.006444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.787102 B = 4059.816631 C = 4344.219084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.030 3.970 3 N -0.502 5.502 4 C 0.018 3.982 5 C 0.174 3.826 6 H 0.154 0.846 7 O -0.338 6.338 8 C 0.189 3.811 9 N -0.241 5.241 10 N -0.287 5.287 11 C -0.369 4.369 12 H 0.090 0.910 13 C 0.011 3.989 14 N -0.829 5.829 15 Si 0.993 3.007 16 H -0.265 1.265 17 H -0.263 1.263 18 H -0.274 1.274 19 C 0.385 3.615 20 O -0.595 6.595 21 C -0.241 4.241 22 S 0.199 5.801 23 H 0.091 0.909 24 H 0.117 0.883 25 H 0.085 0.915 26 H 0.270 0.730 27 H 0.271 0.729 28 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.806 -12.456 7.980 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.248 4.248 3 N -0.219 5.219 4 C -0.115 4.115 5 C 0.110 3.890 6 H 0.171 0.829 7 O -0.243 6.243 8 C -0.057 4.057 9 N -0.064 5.064 10 N -0.095 5.095 11 C -0.496 4.496 12 H 0.107 0.893 13 C -0.197 4.197 14 N -0.462 5.462 15 Si 0.815 3.185 16 H -0.190 1.190 17 H -0.187 1.187 18 H -0.199 1.199 19 C 0.174 3.826 20 O -0.478 6.478 21 C -0.380 4.380 22 S 0.454 5.546 23 H 0.110 0.890 24 H 0.135 0.865 25 H 0.104 0.896 26 H 0.285 0.715 27 H 0.081 0.919 28 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.428 -12.645 7.210 15.215 hybrid contribution 0.369 1.704 -0.092 1.746 sum -4.059 -10.942 7.118 13.670 Atomic orbital electron populations 1.20644 0.82574 1.05653 1.04797 1.27784 1.03669 0.91044 1.02261 1.65921 1.04599 1.34059 1.17331 1.20202 0.90588 0.94408 1.06304 1.20803 0.79525 0.90097 0.98590 0.82931 1.86049 1.27935 1.77158 1.33189 1.28652 0.99884 0.99256 0.77942 1.76059 1.05204 1.00533 1.24638 1.44744 1.32343 1.22730 1.09634 1.19626 1.35668 1.07531 0.86748 0.89258 1.26189 0.94852 0.97636 1.01022 1.70312 1.24645 1.25388 1.25847 0.84969 0.78766 0.78101 0.76703 1.18960 1.18678 1.19897 1.21472 0.86062 0.89333 0.85720 1.90501 1.40002 1.33951 1.83390 1.27108 1.05901 0.95044 1.09956 1.83310 0.94637 1.09907 1.66721 0.89022 0.86489 0.89603 0.71455 0.91917 0.77967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 10.46 71.24 0.75 -0.82 15 2 C 0.03 0.90 7.39 88.52 0.65 1.55 15 3 N -0.50 -19.99 10.42 -179.41 -1.87 -21.86 15 4 C 0.02 0.68 5.92 41.52 0.25 0.92 15 5 C 0.17 7.44 3.82 29.22 0.11 7.55 15 6 H 0.15 6.07 8.14 -2.38 -0.02 6.05 15 7 O -0.34 -12.63 9.54 -83.88 -0.80 -13.43 15 8 C 0.19 7.09 10.73 130.59 1.40 8.50 15 9 N -0.24 -12.12 8.89 -175.37 -1.56 -13.68 15 10 N -0.29 -16.67 3.61 -306.27 -1.11 -17.78 15 11 C -0.37 -22.67 9.65 84.05 0.81 -21.86 15 12 H 0.09 5.75 7.26 -2.91 -0.02 5.73 15 13 C 0.01 0.63 5.48 84.89 0.47 1.10 15 14 N -0.83 -45.82 11.37 21.64 0.25 -45.57 15 15 Si 0.99 43.57 29.56 68.60 2.03 45.59 15 16 H -0.26 -11.07 7.11 99.48 0.71 -10.36 15 17 H -0.26 -10.70 7.11 99.48 0.71 -9.99 15 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 19 C 0.39 21.38 6.90 87.70 0.61 21.98 15 20 O -0.59 -37.03 16.84 -3.13 -0.05 -37.08 15 21 C -0.24 -7.17 10.00 66.77 0.67 -6.51 15 22 S 0.20 4.65 23.18 -56.49 -1.31 3.34 15 23 H 0.09 1.79 8.14 -2.39 -0.02 1.77 15 24 H 0.12 1.45 8.14 -2.39 -0.02 1.43 15 25 H 0.09 1.83 8.14 -2.39 -0.02 1.81 15 26 H 0.27 6.57 8.06 -2.91 -0.02 6.54 15 27 H 0.27 13.72 8.31 -92.71 -0.77 12.95 15 28 H 0.20 4.88 6.97 -2.91 -0.02 4.86 15 Total: -1.00 -81.28 268.27 2.49 -78.79 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 1.21 Total: 9.25 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 5.71 Total: 12.42 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -4.29 Total: -98.88 kcal Atomic # 8 Polarization: -49.65 SS G_CDS: -0.85 Total: -50.51 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 4.65 SS G_CDS: -1.31 Total: 3.34 kcal Total: -81.28 2.49 -78.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260335053.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.034 kcal (2) G-P(sol) polarization free energy of solvation -81.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds