Wall clock time and date at job start Mon Mar 30 2020 04:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29023 * 124.91281 * 2 1 4 4 C 1.31785 * 117.12342 * 179.97438 * 3 2 1 5 5 C 1.50695 * 122.75402 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.61723 * 184.97973 * 5 4 3 7 7 O 1.43104 * 109.61548 * 64.62432 * 5 4 3 8 8 C 1.35120 * 116.95285 * 285.83969 * 7 5 4 9 9 N 1.29446 * 120.79508 * 326.54434 * 8 7 5 10 10 N 1.40214 * 120.31508 * 0.09443 * 9 8 7 11 11 C 1.36843 * 120.49083 * 196.39932 * 10 9 8 12 12 H 1.08002 * 119.99958 * 180.02562 * 11 10 9 13 13 C 1.38818 * 119.99777 * 359.97438 * 11 10 9 14 14 N 1.31467 * 120.00524 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99911 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47070 * 89.99958 * 15 13 11 17 17 H 1.48497 * 109.47410 * 209.99787 * 15 13 11 18 18 H 1.48502 * 109.46955 * 330.00368 * 15 13 11 19 19 C 1.35638 * 119.10798 * 16.37250 * 10 9 8 20 20 O 1.21300 * 121.03754 * 180.38741 * 19 10 9 21 21 C 1.33643 * 114.49774 * 0.02562 * 4 3 2 22 22 S 1.70974 * 124.91485 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.46664 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47157 * 300.00915 * 1 2 3 25 25 H 1.09000 * 109.47306 * 60.01555 * 1 2 3 26 26 H 1.08000 * 119.60066 * 146.56576 * 8 7 5 27 27 H 0.96996 * 120.00287 * 180.02562 * 14 13 11 28 28 H 1.08007 * 126.03527 * 180.25708 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0246 0.0012 6 1 5.5459 1.6378 -0.0876 7 8 4.4035 2.7649 1.2192 8 6 3.3164 3.5578 1.3433 9 7 2.8071 4.1503 0.3112 10 7 3.3771 3.9761 -0.9579 11 6 3.0729 4.8342 -1.9795 12 1 3.5163 4.6924 -2.9540 13 6 2.1935 5.8864 -1.7634 14 7 1.6533 6.0588 -0.5773 15 14 1.7775 7.0574 -3.1582 16 1 0.5947 6.5470 -3.8969 17 1 1.4725 8.4004 -2.6027 18 1 2.9347 7.1556 -4.0838 19 6 4.2354 2.9454 -1.1599 20 8 4.7540 2.7662 -2.2417 21 6 3.9354 -0.4006 0.0004 22 16 2.4856 -1.4020 0.0006 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5140 0.8899 25 1 -0.3634 0.5136 -0.8901 26 1 2.8673 3.6991 2.3152 27 1 1.0386 6.7937 -0.4265 28 1 4.9546 -0.7581 0.0047 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260335075.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:36 Heat of formation + Delta-G solvation = 47.943265 kcal Electronic energy + Delta-G solvation = -18286.849295 eV Core-core repulsion = 15239.770930 eV Total energy + Delta-G solvation = -3047.078365 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.57508 -38.90375 -37.02677 -35.00230 -32.57329 -32.15211 -30.20579 -28.75902 -27.50056 -24.66538 -23.07120 -22.45811 -19.86651 -19.13938 -18.43033 -17.20030 -16.53933 -15.70297 -15.37167 -14.81829 -14.60059 -14.49737 -13.78876 -13.69996 -13.39185 -13.33431 -12.47542 -12.30433 -12.08094 -11.78257 -11.57695 -11.50297 -11.05640 -10.62894 -10.31840 -10.30080 -9.67384 -9.39205 -9.26107 -8.89426 -8.72916 -8.19851 -7.51609 -6.15618 -3.84593 0.81570 1.45655 1.77375 2.50885 3.06655 3.20156 3.25404 3.30160 3.77122 3.84281 4.16507 4.22575 4.48812 4.84881 4.98677 5.21103 5.30775 5.35620 5.46622 5.55725 5.76474 5.92555 6.18495 6.41063 6.98867 7.36286 7.54869 7.94155 8.14876 8.58578 9.05281 9.53603 9.85476 10.78582 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.024736 B = 0.006960 C = 0.006503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.686433 B = 4021.791383 C = 4304.807999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.056 3.944 3 N -0.444 5.444 4 C 0.053 3.947 5 C 0.162 3.838 6 H 0.142 0.858 7 O -0.350 6.350 8 C 0.163 3.837 9 N -0.176 5.176 10 N -0.256 5.256 11 C -0.321 4.321 12 H 0.115 0.885 13 C 0.046 3.954 14 N -0.811 5.811 15 Si 0.925 3.075 16 H -0.276 1.276 17 H -0.280 1.280 18 H -0.268 1.268 19 C 0.394 3.606 20 O -0.566 6.566 21 C -0.238 4.238 22 S 0.099 5.901 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.207 0.793 27 H 0.263 0.737 28 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.542 -11.939 5.516 13.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.223 4.223 3 N -0.159 5.159 4 C -0.080 4.080 5 C 0.097 3.903 6 H 0.159 0.841 7 O -0.256 6.256 8 C -0.083 4.083 9 N 0.000 5.000 10 N -0.063 5.063 11 C -0.448 4.448 12 H 0.133 0.867 13 C -0.164 4.164 14 N -0.444 5.444 15 Si 0.751 3.249 16 H -0.201 1.201 17 H -0.206 1.206 18 H -0.193 1.193 19 C 0.182 3.818 20 O -0.448 6.448 21 C -0.377 4.377 22 S 0.353 5.647 23 H 0.095 0.905 24 H 0.107 0.893 25 H 0.108 0.892 26 H 0.223 0.777 27 H 0.074 0.926 28 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.324 -11.945 4.890 13.115 hybrid contribution 0.786 0.679 -0.524 1.163 sum -1.538 -11.266 4.367 12.181 Atomic orbital electron populations 1.20416 0.85116 1.02963 1.04907 1.27107 1.01826 0.90231 1.03167 1.66046 1.04016 1.31296 1.14499 1.20617 0.90647 0.94302 1.02392 1.21263 0.97775 0.87686 0.83534 0.84088 1.86036 1.43819 1.57509 1.38220 1.27257 0.88157 0.93331 0.99574 1.76098 1.19561 1.15032 0.89356 1.44630 1.33688 1.22452 1.05504 1.19637 1.27937 1.06527 0.90748 0.86736 1.25372 0.95949 0.97733 0.97383 1.70245 1.25732 1.28231 1.20179 0.85967 0.79158 0.79158 0.80622 1.20129 1.20583 1.19257 1.20649 0.85224 0.86054 0.89885 1.90542 1.53987 1.73820 1.26451 1.26756 1.03239 0.95314 1.12373 1.83695 0.98156 1.13513 1.69307 0.90536 0.89251 0.89222 0.77688 0.92627 0.80311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.47 36.01 0.38 -0.51 15 2 C 0.06 0.89 7.39 -13.46 -0.10 0.79 15 3 N -0.44 -8.92 9.70 -8.06 -0.08 -9.00 15 4 C 0.05 1.03 5.56 -84.22 -0.47 0.56 15 5 C 0.16 3.42 3.71 -28.84 -0.11 3.31 15 6 H 0.14 2.53 8.03 -51.93 -0.42 2.11 15 7 O -0.35 -7.28 10.18 -17.06 -0.17 -7.45 15 8 C 0.16 3.53 11.51 51.76 0.60 4.13 15 9 N -0.18 -4.62 8.86 29.43 0.26 -4.36 15 10 N -0.26 -7.27 3.62 -10.73 -0.04 -7.31 15 11 C -0.32 -9.50 9.68 -15.10 -0.15 -9.64 15 12 H 0.12 3.44 7.24 -52.49 -0.38 3.06 15 13 C 0.05 1.26 5.49 -17.49 -0.10 1.16 15 14 N -0.81 -22.69 11.34 55.49 0.63 -22.06 15 15 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 15 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 19 C 0.39 10.51 6.88 -10.40 -0.07 10.44 15 20 O -0.57 -16.39 16.86 5.54 0.09 -16.30 15 21 C -0.24 -3.61 11.07 29.12 0.32 -3.29 15 22 S 0.10 1.28 23.17 -107.50 -2.49 -1.21 15 23 H 0.08 0.67 8.12 -51.93 -0.42 0.24 15 24 H 0.09 1.03 8.14 -51.93 -0.42 0.60 15 25 H 0.09 1.15 8.14 -51.93 -0.42 0.72 15 26 H 0.21 3.52 8.06 -52.49 -0.42 3.10 15 27 H 0.26 6.85 8.31 -40.82 -0.34 6.51 15 28 H 0.18 2.13 8.06 -52.48 -0.42 1.71 15 LS Contribution 270.47 15.07 4.08 4.08 Total: -1.00 -35.31 270.47 -4.48 -39.79 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -2.04 Total: 0.84 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 0.31 Total: 6.95 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.77 Total: -42.73 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.08 Total: -23.76 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.49 Total: -1.21 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -35.31 -4.48 -39.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260335075.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.733 kcal (2) G-P(sol) polarization free energy of solvation -35.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds