Wall clock time and date at job start Mon Mar 30 2020 04:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29023 * 124.91281 * 2 1 4 4 C 1.31785 * 117.12342 * 179.97438 * 3 2 1 5 5 C 1.50695 * 122.75402 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.61723 * 184.97973 * 5 4 3 7 7 O 1.43104 * 109.61548 * 64.62432 * 5 4 3 8 8 C 1.35120 * 116.95285 * 285.83969 * 7 5 4 9 9 N 1.29446 * 120.79508 * 326.54434 * 8 7 5 10 10 N 1.40214 * 120.31508 * 0.09443 * 9 8 7 11 11 C 1.36843 * 120.49083 * 196.39932 * 10 9 8 12 12 H 1.08002 * 119.99958 * 180.02562 * 11 10 9 13 13 C 1.38818 * 119.99777 * 359.97438 * 11 10 9 14 14 N 1.31467 * 120.00524 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99911 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47070 * 89.99958 * 15 13 11 17 17 H 1.48497 * 109.47410 * 209.99787 * 15 13 11 18 18 H 1.48502 * 109.46955 * 330.00368 * 15 13 11 19 19 C 1.35638 * 119.10798 * 16.37250 * 10 9 8 20 20 O 1.21300 * 121.03754 * 180.38741 * 19 10 9 21 21 C 1.33643 * 114.49774 * 0.02562 * 4 3 2 22 22 S 1.70974 * 124.91485 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.46664 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47157 * 300.00915 * 1 2 3 25 25 H 1.09000 * 109.47306 * 60.01555 * 1 2 3 26 26 H 1.08000 * 119.60066 * 146.56576 * 8 7 5 27 27 H 0.96996 * 120.00287 * 180.02562 * 14 13 11 28 28 H 1.08007 * 126.03527 * 180.25708 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0246 0.0012 6 1 5.5459 1.6378 -0.0876 7 8 4.4035 2.7649 1.2192 8 6 3.3164 3.5578 1.3433 9 7 2.8071 4.1503 0.3112 10 7 3.3771 3.9761 -0.9579 11 6 3.0729 4.8342 -1.9795 12 1 3.5163 4.6924 -2.9540 13 6 2.1935 5.8864 -1.7634 14 7 1.6533 6.0588 -0.5773 15 14 1.7775 7.0574 -3.1582 16 1 0.5947 6.5470 -3.8969 17 1 1.4725 8.4004 -2.6027 18 1 2.9347 7.1556 -4.0838 19 6 4.2354 2.9454 -1.1599 20 8 4.7540 2.7662 -2.2417 21 6 3.9354 -0.4006 0.0004 22 16 2.4856 -1.4020 0.0006 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5140 0.8899 25 1 -0.3634 0.5136 -0.8901 26 1 2.8673 3.6991 2.3152 27 1 1.0386 6.7937 -0.4265 28 1 4.9546 -0.7581 0.0047 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260335075.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:36 Heat of formation + Delta-G solvation = 19.790915 kcal Electronic energy + Delta-G solvation = -18288.070072 eV Core-core repulsion = 15239.770930 eV Total energy + Delta-G solvation = -3048.299143 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.19624 -40.37122 -38.94493 -36.94152 -34.29289 -33.71587 -32.07108 -30.18868 -28.93471 -26.60980 -24.58280 -24.10987 -21.30172 -20.80027 -20.11351 -18.86223 -18.15798 -17.56261 -17.08704 -16.54932 -16.07777 -15.87057 -15.62669 -15.24524 -15.18892 -14.48288 -13.96095 -13.62747 -13.54935 -13.40866 -13.09837 -13.04295 -12.75182 -12.62330 -12.24648 -12.11120 -11.53848 -10.86908 -10.57786 -10.42730 -10.34625 -9.74863 -9.49582 -8.21392 -6.01567 -0.36848 0.35578 0.58848 0.80066 1.36167 1.39318 1.49804 1.61157 1.97818 2.05315 2.37244 2.69664 2.95293 3.10202 3.22568 3.75878 3.87409 4.24530 4.34570 4.56579 4.61166 4.65615 4.90056 5.11645 5.14808 5.46793 5.51249 6.04919 6.58363 6.75248 6.96959 7.51630 7.91959 8.72360 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.024736 B = 0.006960 C = 0.006503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.686433 B = 4021.791383 C = 4304.807999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.028 3.972 3 N -0.500 5.500 4 C 0.012 3.988 5 C 0.170 3.830 6 H 0.170 0.830 7 O -0.346 6.346 8 C 0.196 3.804 9 N -0.226 5.226 10 N -0.275 5.275 11 C -0.367 4.367 12 H 0.090 0.910 13 C 0.009 3.991 14 N -0.829 5.829 15 Si 0.996 3.004 16 H -0.268 1.268 17 H -0.263 1.263 18 H -0.271 1.271 19 C 0.375 3.625 20 O -0.611 6.611 21 C -0.231 4.231 22 S 0.201 5.799 23 H 0.114 0.886 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.251 0.749 27 H 0.270 0.730 28 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.135 -13.692 6.669 15.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.249 4.249 3 N -0.216 5.216 4 C -0.120 4.120 5 C 0.106 3.894 6 H 0.187 0.813 7 O -0.251 6.251 8 C -0.050 4.050 9 N -0.050 5.050 10 N -0.080 5.080 11 C -0.494 4.494 12 H 0.108 0.892 13 C -0.199 4.199 14 N -0.462 5.462 15 Si 0.817 3.183 16 H -0.193 1.193 17 H -0.187 1.187 18 H -0.195 1.195 19 C 0.165 3.835 20 O -0.497 6.497 21 C -0.371 4.371 22 S 0.456 5.544 23 H 0.132 0.868 24 H 0.110 0.890 25 H 0.093 0.907 26 H 0.266 0.734 27 H 0.080 0.920 28 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -2.940 -13.712 6.082 15.285 hybrid contribution 0.980 1.028 -0.753 1.607 sum -1.961 -12.684 5.329 13.897 Atomic orbital electron populations 1.20557 0.83238 1.05235 1.04309 1.27656 1.03405 0.91231 1.02654 1.65999 1.04814 1.34100 1.16662 1.20306 0.90465 0.94756 1.06493 1.21245 1.00095 0.87244 0.80773 0.81326 1.86028 1.43558 1.57416 1.38126 1.28149 0.86554 0.90254 1.00055 1.76027 1.21669 1.18082 0.89196 1.44711 1.34277 1.22808 1.06247 1.19652 1.29998 1.08728 0.90974 0.89194 1.26227 0.94945 0.98561 1.00163 1.70348 1.25523 1.28607 1.21690 0.84948 0.78715 0.77289 0.77333 1.19335 1.18702 1.19534 1.21653 0.84464 0.86285 0.91135 1.90475 1.55751 1.74969 1.28537 1.27237 1.06152 0.94734 1.09005 1.83299 0.94708 1.09817 1.66557 0.86784 0.89000 0.90664 0.73369 0.92047 0.77167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.65 10.47 71.24 0.75 -0.90 15 2 C 0.03 0.85 7.39 88.52 0.65 1.51 15 3 N -0.50 -19.88 9.70 -179.40 -1.74 -21.62 15 4 C 0.01 0.47 5.56 41.52 0.23 0.70 15 5 C 0.17 7.16 3.71 29.23 0.11 7.27 15 6 H 0.17 5.92 8.03 -2.39 -0.02 5.90 15 7 O -0.35 -14.10 10.18 -83.96 -0.85 -14.96 15 8 C 0.20 8.38 11.51 130.59 1.50 9.88 15 9 N -0.23 -12.07 8.86 -175.36 -1.55 -13.63 15 10 N -0.27 -16.27 3.62 -305.76 -1.11 -17.37 15 11 C -0.37 -22.79 9.68 84.05 0.81 -21.98 15 12 H 0.09 5.81 7.24 -2.91 -0.02 5.79 15 13 C 0.01 0.52 5.49 84.89 0.47 0.99 15 14 N -0.83 -47.13 11.34 21.64 0.25 -46.89 15 15 Si 1.00 44.13 29.55 68.60 2.03 46.15 15 16 H -0.27 -11.48 7.11 99.48 0.71 -10.78 15 17 H -0.26 -10.80 7.11 99.48 0.71 -10.09 15 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 19 C 0.38 20.81 6.88 87.65 0.60 21.41 15 20 O -0.61 -37.31 16.86 -3.09 -0.05 -37.36 15 21 C -0.23 -6.38 11.07 66.78 0.74 -5.64 15 22 S 0.20 4.45 23.17 -56.49 -1.31 3.14 15 23 H 0.11 1.61 8.12 -2.38 -0.02 1.59 15 24 H 0.09 2.00 8.14 -2.39 -0.02 1.98 15 25 H 0.07 1.91 8.14 -2.39 -0.02 1.89 15 26 H 0.25 7.99 8.06 -2.91 -0.02 7.96 15 27 H 0.27 14.08 8.31 -92.71 -0.77 13.31 15 28 H 0.21 4.18 8.06 -2.91 -0.02 4.15 15 Total: -1.00 -81.58 270.47 2.72 -78.86 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.21 Total: 10.42 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 5.86 Total: 13.25 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -4.16 Total: -99.51 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -0.91 Total: -52.32 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: 4.45 SS G_CDS: -1.31 Total: 3.14 kcal Total: -81.58 2.72 -78.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260335075.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.649 kcal (2) G-P(sol) polarization free energy of solvation -81.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds