Wall clock time and date at job start Mon Mar 30 2020 04:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31346 * 122.89495 * 2 1 4 4 C 1.29182 * 117.30481 * 180.02562 * 3 2 1 5 5 S 1.70952 * 110.36855 * 359.72220 * 4 3 2 6 6 C 1.35166 * 122.88668 * 180.02562 * 2 1 3 7 7 C 1.47713 * 126.11047 * 359.97438 * 6 2 1 8 8 N 1.30965 * 125.90029 * 0.20021 * 7 6 2 9 9 O 1.41664 * 107.75446 * 180.23509 * 8 7 6 10 10 N 1.41637 * 107.67369 * 359.72889 * 9 8 7 11 11 C 1.30211 * 108.01962 * 0.02562 * 10 9 8 12 12 O 1.35655 * 125.82327 * 179.97438 * 11 10 9 13 13 C 1.42900 * 116.99783 * 0.02562 * 12 11 10 14 14 C 1.50707 * 109.46789 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99850 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99773 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99955 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99882 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47105 * 89.99722 * 18 16 14 20 20 H 1.48500 * 109.47037 * 210.00214 * 18 16 14 21 21 H 1.48507 * 109.46847 * 329.99749 * 18 16 14 22 22 H 1.08998 * 109.47031 * 269.97897 * 1 2 3 23 23 H 1.09000 * 109.46604 * 29.97752 * 1 2 3 24 24 H 1.09003 * 109.46858 * 149.97956 * 1 2 3 25 25 H 1.08000 * 124.81840 * 180.02562 * 4 3 2 26 26 H 1.08993 * 109.47230 * 299.99802 * 13 12 11 27 27 H 1.08995 * 109.47007 * 60.00259 * 13 12 11 28 28 H 0.96998 * 119.99363 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2203 1.1029 0.0000 4 6 3.5060 0.9770 -0.0005 5 16 3.9421 -0.6759 0.0067 6 6 2.2409 -1.1351 -0.0005 7 6 1.7115 -2.5140 -0.0006 8 7 0.4459 -2.8507 -0.0039 9 8 0.3752 -4.2656 0.0029 10 7 1.7016 -4.7624 0.0043 11 6 2.5131 -3.7441 -0.0007 12 8 3.8681 -3.8086 -0.0008 13 6 4.4555 -5.1113 0.0045 14 6 5.9573 -4.9852 0.0030 15 1 6.4171 -4.0079 -0.0020 16 6 6.7442 -6.1173 0.0069 17 7 6.1842 -7.3073 0.0114 18 14 8.6056 -5.9610 0.0057 19 1 9.0993 -5.9144 1.4054 20 1 9.2001 -7.1304 -0.6903 21 1 8.9971 -4.7139 -0.6992 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3632 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 4.2061 1.7994 -0.0002 26 1 4.1367 -5.6500 0.8968 27 1 4.1362 -5.6574 -0.8831 28 1 6.7378 -8.1037 0.0138 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260357570.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:27 Heat of formation + Delta-G solvation = 97.536812 kcal Electronic energy + Delta-G solvation = -17281.516891 eV Core-core repulsion = 14236.589063 eV Total energy + Delta-G solvation = -3044.927828 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.91398 -39.87190 -37.94848 -33.94070 -33.13577 -31.57645 -31.07390 -28.27232 -27.96104 -25.04402 -23.99746 -22.33911 -21.43498 -19.16565 -18.45712 -17.42082 -16.64595 -16.28153 -16.20460 -15.49333 -15.01339 -14.63921 -14.29427 -13.77991 -13.62714 -13.42478 -12.73319 -12.63248 -12.27741 -12.03612 -11.55997 -11.36089 -11.29971 -11.24787 -11.06703 -10.87903 -10.38605 -9.80757 -9.57664 -9.46105 -9.20544 -8.81096 -8.61327 -6.38649 -4.46193 -0.01185 1.09078 1.17918 1.58909 2.27368 2.66994 2.76037 3.11915 3.15245 3.21746 3.26319 3.51714 4.03492 4.15405 4.56135 4.92095 4.95013 4.98278 5.21014 5.50872 5.55258 5.62296 5.71881 6.15615 6.59020 6.90714 7.13187 7.44352 7.48422 7.71126 7.90461 8.61402 9.19322 10.71886 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.022503 B = 0.005870 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.995350 B = 4768.785364 C = 5992.327560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.118 3.882 3 N -0.476 5.476 4 C 0.008 3.992 5 S 0.253 5.747 6 C -0.211 4.211 7 C 0.173 3.827 8 N -0.268 5.268 9 O 0.028 5.972 10 N -0.329 5.329 11 C 0.274 3.726 12 O -0.278 6.278 13 C 0.194 3.806 14 C -0.533 4.533 15 H 0.075 0.925 16 C 0.064 3.936 17 N -0.887 5.887 18 Si 0.917 3.083 19 H -0.275 1.275 20 H -0.282 1.282 21 H -0.269 1.269 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.089 0.911 25 H 0.206 0.794 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.106 14.302 -0.019 15.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.022 4.022 3 N -0.190 5.190 4 C -0.287 4.287 5 S 0.509 5.491 6 C -0.334 4.334 7 C -0.012 4.012 8 N -0.014 5.014 9 O -0.107 6.107 10 N -0.102 5.102 11 C 0.052 3.948 12 O -0.179 6.179 13 C 0.123 3.877 14 C -0.571 4.571 15 H 0.093 0.907 16 C -0.140 4.140 17 N -0.524 5.524 18 Si 0.743 3.257 19 H -0.201 1.201 20 H -0.208 1.208 21 H -0.193 1.193 22 H 0.100 0.900 23 H 0.098 0.902 24 H 0.108 0.892 25 H 0.222 0.778 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.181 13.501 -0.016 14.461 hybrid contribution 0.792 0.070 0.019 0.795 sum -4.389 13.571 0.003 14.264 Atomic orbital electron populations 1.20585 0.86285 1.04170 1.03632 1.20679 0.98620 0.85211 0.97671 1.66195 1.05164 1.30923 1.16701 1.28761 0.95522 1.02095 1.02317 1.84888 1.01697 0.99506 1.63025 1.23085 0.97975 0.93043 1.19344 1.22114 0.89332 0.91209 0.98507 1.80021 1.14034 0.93730 1.13611 1.93248 1.20315 1.10667 1.86495 1.80389 0.88669 1.15697 1.25473 1.24339 0.89036 0.88647 0.92741 1.86316 1.08217 1.38468 1.84893 1.20998 0.93644 0.74515 0.98569 1.20874 0.88056 0.94226 1.53934 0.90662 1.24950 1.00149 0.94530 0.94342 1.69967 1.36443 0.97754 1.48206 0.86190 0.82890 0.78096 0.78528 1.20119 1.20766 1.19318 0.89974 0.90225 0.89229 0.77770 0.94913 0.94904 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 9.80 36.01 0.35 -0.65 15 2 C 0.12 1.61 6.78 -83.89 -0.57 1.04 15 3 N -0.48 -6.11 10.51 -11.62 -0.12 -6.23 15 4 C 0.01 0.09 12.22 51.65 0.63 0.72 15 5 S 0.25 3.29 22.25 -107.50 -2.39 0.90 15 6 C -0.21 -3.18 6.51 -36.81 -0.24 -3.42 15 7 C 0.17 3.01 7.17 -80.90 -0.58 2.43 15 8 N -0.27 -4.61 10.56 34.43 0.36 -4.25 15 9 O 0.03 0.53 13.62 12.24 0.17 0.70 15 10 N -0.33 -7.01 12.31 31.82 0.39 -6.62 15 11 C 0.27 5.58 8.05 -14.77 -0.12 5.46 15 12 O -0.28 -6.14 9.27 -18.66 -0.17 -6.31 15 13 C 0.19 4.97 5.36 36.01 0.19 5.16 15 14 C -0.53 -14.21 9.43 -34.44 -0.32 -14.54 15 15 H 0.08 1.92 7.81 -52.49 -0.41 1.51 15 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 17 N -0.89 -25.01 13.29 55.43 0.74 -24.27 15 18 Si 0.92 20.17 29.54 -169.99 -5.02 15.15 15 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 22 H 0.08 0.86 8.14 -51.93 -0.42 0.44 15 23 H 0.08 0.79 8.14 -51.93 -0.42 0.36 15 24 H 0.09 1.09 6.08 -51.93 -0.32 0.77 15 25 H 0.21 1.30 8.06 -52.49 -0.42 0.88 15 26 H 0.03 0.89 8.14 -51.93 -0.42 0.47 15 27 H 0.03 0.89 8.14 -51.93 -0.42 0.47 15 28 H 0.27 7.13 8.31 -40.82 -0.34 6.79 15 LS Contribution 276.28 15.07 4.16 4.16 Total: -1.00 -29.29 276.28 -4.61 -33.90 By element: Atomic # 1 Polarization: -2.97 SS G_CDS: -1.97 Total: -4.94 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -0.75 Total: -2.19 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 1.37 Total: -41.37 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.01 Total: -5.61 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -2.39 Total: 0.90 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.29 -4.61 -33.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260357570.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.437 kcal (2) G-P(sol) polarization free energy of solvation -29.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds