Wall clock time and date at job start Mon Mar 30 2020 04:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31346 * 122.89495 * 2 1 4 4 C 1.29182 * 117.30481 * 180.02562 * 3 2 1 5 5 S 1.70952 * 110.36855 * 359.72220 * 4 3 2 6 6 C 1.35166 * 122.88668 * 180.02562 * 2 1 3 7 7 C 1.47713 * 126.11047 * 359.97438 * 6 2 1 8 8 N 1.30965 * 125.90029 * 0.20021 * 7 6 2 9 9 O 1.41664 * 107.75446 * 180.23509 * 8 7 6 10 10 N 1.41637 * 107.67369 * 359.72889 * 9 8 7 11 11 C 1.30211 * 108.01962 * 0.02562 * 10 9 8 12 12 O 1.35655 * 125.82327 * 179.97438 * 11 10 9 13 13 C 1.42900 * 116.99783 * 0.02562 * 12 11 10 14 14 C 1.50707 * 109.46789 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99850 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99773 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99955 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99882 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47105 * 89.99722 * 18 16 14 20 20 H 1.48500 * 109.47037 * 210.00214 * 18 16 14 21 21 H 1.48507 * 109.46847 * 329.99749 * 18 16 14 22 22 H 1.08998 * 109.47031 * 269.97897 * 1 2 3 23 23 H 1.09000 * 109.46604 * 29.97752 * 1 2 3 24 24 H 1.09003 * 109.46858 * 149.97956 * 1 2 3 25 25 H 1.08000 * 124.81840 * 180.02562 * 4 3 2 26 26 H 1.08993 * 109.47230 * 299.99802 * 13 12 11 27 27 H 1.08995 * 109.47007 * 60.00259 * 13 12 11 28 28 H 0.96998 * 119.99363 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2203 1.1029 0.0000 4 6 3.5060 0.9770 -0.0005 5 16 3.9421 -0.6759 0.0067 6 6 2.2409 -1.1351 -0.0005 7 6 1.7115 -2.5140 -0.0006 8 7 0.4459 -2.8507 -0.0039 9 8 0.3752 -4.2656 0.0029 10 7 1.7016 -4.7624 0.0043 11 6 2.5131 -3.7441 -0.0007 12 8 3.8681 -3.8086 -0.0008 13 6 4.4555 -5.1113 0.0045 14 6 5.9573 -4.9852 0.0030 15 1 6.4171 -4.0079 -0.0020 16 6 6.7442 -6.1173 0.0069 17 7 6.1842 -7.3073 0.0114 18 14 8.6056 -5.9610 0.0057 19 1 9.0993 -5.9144 1.4054 20 1 9.2001 -7.1304 -0.6903 21 1 8.9971 -4.7139 -0.6992 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3632 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 4.2061 1.7994 -0.0002 26 1 4.1367 -5.6500 0.8968 27 1 4.1362 -5.6574 -0.8831 28 1 6.7378 -8.1037 0.0138 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260357570.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:27 Heat of formation + Delta-G solvation = 76.310020 kcal Electronic energy + Delta-G solvation = -17282.437354 eV Core-core repulsion = 14236.589063 eV Total energy + Delta-G solvation = -3045.848290 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.41417 -40.94092 -39.69945 -35.33999 -35.07489 -33.18527 -32.21003 -30.07686 -29.29028 -26.00574 -25.80222 -23.86174 -23.07208 -20.40082 -19.69817 -18.88691 -18.56214 -17.82212 -17.66935 -16.92923 -16.37733 -16.22948 -15.86793 -15.26218 -14.76004 -14.59329 -14.08489 -13.95551 -13.53467 -13.42860 -13.33269 -13.02257 -12.85079 -12.77419 -12.61960 -12.28940 -12.16287 -11.57375 -11.13184 -10.78876 -10.68531 -10.36423 -9.84569 -8.42606 -6.59730 -1.17881 -0.20294 0.05308 0.56867 0.88064 1.06573 1.43218 1.45031 1.57376 1.65924 1.72298 2.01358 2.32633 2.93420 2.96048 3.16906 3.61554 3.88255 4.12821 4.15741 4.53806 4.66663 4.67567 4.77148 4.83810 5.22928 5.32315 5.59191 5.74957 5.99059 6.48155 6.55580 7.11990 8.69548 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.022503 B = 0.005870 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.995350 B = 4768.785364 C = 5992.327560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.136 3.864 3 N -0.493 5.493 4 C 0.053 3.947 5 S 0.227 5.773 6 C -0.252 4.252 7 C 0.192 3.808 8 N -0.261 5.261 9 O 0.019 5.981 10 N -0.357 5.357 11 C 0.263 3.737 12 O -0.273 6.273 13 C 0.211 3.789 14 C -0.553 4.553 15 H 0.086 0.914 16 C 0.012 3.988 17 N -0.927 5.927 18 Si 0.992 3.008 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.254 1.254 22 H 0.094 0.906 23 H 0.098 0.902 24 H 0.080 0.920 25 H 0.253 0.747 26 H 0.008 0.992 27 H 0.008 0.992 28 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.882 17.004 0.011 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.005 4.005 3 N -0.207 5.207 4 C -0.242 4.242 5 S 0.484 5.516 6 C -0.375 4.375 7 C 0.008 3.992 8 N -0.009 5.009 9 O -0.114 6.114 10 N -0.128 5.128 11 C 0.042 3.958 12 O -0.174 6.174 13 C 0.139 3.861 14 C -0.590 4.590 15 H 0.104 0.896 16 C -0.188 4.188 17 N -0.564 5.564 18 Si 0.813 3.187 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.177 1.177 22 H 0.112 0.888 23 H 0.117 0.883 24 H 0.098 0.902 25 H 0.269 0.731 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.990 16.183 0.014 16.667 hybrid contribution 0.334 -0.579 0.010 0.669 sum -3.656 15.603 0.024 16.026 Atomic orbital electron populations 1.20684 0.85114 1.04627 1.04456 1.21032 0.99558 0.84914 0.94970 1.66324 1.05960 1.30117 1.18321 1.29575 0.95350 1.01727 0.97594 1.85005 1.01027 1.01728 1.63884 1.23075 0.99181 0.92035 1.23190 1.22252 0.88495 0.91446 0.97052 1.80059 1.13760 0.92099 1.15021 1.93228 1.18906 1.12240 1.87041 1.80317 0.89917 1.17053 1.25503 1.24632 0.88322 0.90023 0.92861 1.86283 1.09391 1.36326 1.85430 1.20539 0.93885 0.75565 0.96154 1.21250 0.88501 0.95006 1.54285 0.89620 1.26035 1.05657 0.93862 0.93278 1.70096 1.38651 0.98751 1.48934 0.85047 0.75972 0.78629 0.79026 1.19141 1.20409 1.17737 0.88806 0.88305 0.90157 0.73089 0.97434 0.97434 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.87 9.80 71.24 0.70 -1.17 15 2 C 0.14 3.42 6.78 41.92 0.28 3.70 15 3 N -0.49 -11.01 10.51 -190.67 -2.00 -13.02 15 4 C 0.05 0.91 12.22 130.63 1.60 2.50 15 5 S 0.23 5.53 22.25 -56.49 -1.26 4.27 15 6 C -0.25 -7.33 6.51 24.07 0.16 -7.17 15 7 C 0.19 6.70 7.17 44.02 0.32 7.01 15 8 N -0.26 -9.02 10.56 -44.98 -0.47 -9.50 15 9 O 0.02 0.74 13.62 71.19 0.97 1.71 15 10 N -0.36 -15.85 12.31 -167.14 -2.06 -17.91 15 11 C 0.26 11.06 8.05 87.18 0.70 11.76 15 12 O -0.27 -12.41 9.27 -89.70 -0.83 -13.24 15 13 C 0.21 11.24 5.36 71.24 0.38 11.62 15 14 C -0.55 -29.83 9.43 25.60 0.24 -29.58 15 15 H 0.09 4.33 7.81 -2.91 -0.02 4.31 15 16 C 0.01 0.63 5.46 84.65 0.46 1.09 15 17 N -0.93 -53.24 13.29 21.45 0.28 -52.95 15 18 Si 0.99 40.71 29.54 68.60 2.03 42.73 15 19 H -0.27 -10.50 7.11 99.48 0.71 -9.80 15 20 H -0.28 -11.22 7.11 99.48 0.71 -10.51 15 21 H -0.25 -9.74 7.11 99.48 0.71 -9.03 15 22 H 0.09 1.77 8.14 -2.39 -0.02 1.75 15 23 H 0.10 1.68 8.14 -2.39 -0.02 1.66 15 24 H 0.08 1.85 6.08 -2.39 -0.01 1.84 15 25 H 0.25 1.79 8.06 -2.91 -0.02 1.76 15 26 H 0.01 0.44 8.14 -2.39 -0.02 0.42 15 27 H 0.01 0.44 8.14 -2.39 -0.02 0.42 15 28 H 0.27 14.65 8.31 -92.71 -0.77 13.88 15 Total: -1.00 -64.14 276.28 2.71 -61.43 By element: Atomic # 1 Polarization: -4.51 SS G_CDS: 1.21 Total: -3.29 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 4.84 Total: -0.24 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -4.25 Total: -93.38 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.14 Total: -11.53 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 16 Polarization: 5.53 SS G_CDS: -1.26 Total: 4.27 kcal Total: -64.14 2.71 -61.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260357570.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.745 kcal (2) G-P(sol) polarization free energy of solvation -64.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds