Wall clock time and date at job start Mon Mar 30 2020 05:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33424 * 122.71131 * 2 1 4 4 S 1.76172 * 108.06689 * 179.72291 * 3 2 1 5 5 C 1.70970 * 90.34179 * 0.32759 * 4 3 2 6 6 N 1.38955 * 124.94652 * 179.97438 * 5 4 3 7 7 C 1.46373 * 119.32857 * 359.67524 * 6 5 4 8 8 C 1.53222 * 109.15085 * 209.10419 * 7 6 5 9 9 C 1.53244 * 108.57111 * 304.51499 * 8 7 6 10 10 N 1.46384 * 109.15150 * 55.46684 * 9 8 7 11 11 C 1.37164 * 119.32748 * 150.94114 * 10 9 8 12 12 H 1.07996 * 119.99468 * 204.13969 * 11 10 9 13 13 C 1.38883 * 120.00222 * 24.13935 * 11 10 9 14 14 N 1.31477 * 119.99682 * 11.20015 * 13 11 10 15 15 Si 1.86800 * 120.00055 * 191.20239 * 13 11 10 16 16 H 1.48504 * 109.46838 * 89.99752 * 15 13 11 17 17 H 1.48499 * 109.46919 * 209.99717 * 15 13 11 18 18 H 1.48498 * 109.46869 * 330.00141 * 15 13 11 19 19 C 1.34134 * 119.32802 * 179.70159 * 6 5 4 20 20 O 1.21583 * 118.70157 * 359.40080 * 19 6 5 21 21 N 1.29642 * 110.10741 * 359.66734 * 5 4 3 22 22 H 1.09001 * 109.47288 * 270.02559 * 1 2 3 23 23 H 1.09005 * 109.47085 * 30.02421 * 1 2 3 24 24 H 1.09002 * 109.46915 * 150.02098 * 1 2 3 25 25 H 1.08000 * 125.96956 * 359.97438 * 3 2 1 26 26 H 1.08997 * 109.52854 * 328.98799 * 7 6 5 27 27 H 1.09004 * 109.52651 * 89.11645 * 7 6 5 28 28 H 1.08998 * 109.62636 * 184.78361 * 8 7 6 29 29 H 1.08997 * 109.60116 * 64.23285 * 8 7 6 30 30 H 1.08996 * 109.52444 * 295.56394 * 9 8 7 31 31 H 1.08997 * 109.52336 * 175.36774 * 9 8 7 32 32 H 0.97004 * 119.99501 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2281 1.1226 0.0000 4 16 3.9326 0.6772 0.0081 5 6 3.5102 -0.9795 0.0009 6 7 4.4173 -2.0321 0.0024 7 6 5.8520 -1.7422 0.0033 8 6 6.5958 -2.8828 -0.6994 9 6 6.2318 -4.2014 -0.0086 10 7 4.7764 -4.3577 -0.0085 11 6 4.2361 -5.6184 -0.0200 12 1 3.2385 -5.7748 -0.4030 13 6 4.9719 -6.6937 0.4607 14 7 6.0870 -6.4829 1.1245 15 14 4.3774 -8.4395 0.1639 16 1 4.9416 -8.9441 -1.1137 17 1 4.8236 -9.3109 1.2805 18 1 2.8943 -8.4513 0.0890 19 6 3.9603 -3.2932 0.0023 20 8 2.7588 -3.4788 0.0122 21 7 2.2205 -1.1106 0.0005 22 1 -0.3634 0.0005 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 1.8355 2.1287 -0.0004 26 1 6.0352 -0.8074 -0.5265 27 1 6.2052 -1.6538 1.0307 28 1 7.6708 -2.7171 -0.6288 29 1 6.2969 -2.9236 -1.7468 30 1 6.5968 -4.1874 1.0184 31 1 6.6874 -5.0324 -0.5468 32 1 6.6011 -7.2340 1.4599 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260371149.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:29 Heat of formation + Delta-G solvation = 50.094807 kcal Electronic energy + Delta-G solvation = -18429.836883 eV Core-core repulsion = 15518.684910 eV Total energy + Delta-G solvation = -2911.151973 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.29753 -38.86676 -35.50243 -35.34838 -32.25014 -30.78620 -30.03293 -27.20891 -26.17270 -25.13183 -23.32318 -22.02603 -19.57315 -18.78361 -17.38143 -16.96771 -16.26327 -15.94628 -15.52646 -14.66741 -14.34263 -14.02075 -13.59926 -13.34332 -13.25594 -13.00478 -12.81626 -12.28326 -12.18254 -11.71583 -11.43885 -11.17817 -11.01413 -10.66600 -10.53787 -10.29464 -10.27725 -9.72664 -9.33527 -8.96686 -8.81853 -8.39963 -7.75431 -7.49619 -6.30795 -3.87125 1.22646 1.41465 2.06304 3.09931 3.19402 3.27346 3.32477 3.35610 4.17442 4.30078 4.72409 4.99725 5.07040 5.15616 5.39207 5.43751 5.49320 5.57529 5.80008 5.82268 5.91099 5.94956 6.11711 6.17084 6.49098 6.72420 6.87463 7.15461 7.37723 7.59667 8.22103 8.39433 8.64164 9.20383 9.44761 10.02564 10.75489 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.029639 B = 0.006157 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.459900 B = 4546.630610 C = 5378.453389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.106 3.894 3 C -0.311 4.311 4 S 0.069 5.931 5 C 0.326 3.674 6 N -0.528 5.528 7 C 0.107 3.893 8 C -0.158 4.158 9 C 0.141 3.859 10 N -0.454 5.454 11 C -0.288 4.288 12 H 0.100 0.900 13 C 0.027 3.973 14 N -0.891 5.891 15 Si 0.931 3.069 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.269 1.269 19 C 0.645 3.355 20 O -0.559 6.559 21 N -0.480 5.480 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.170 0.830 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.256 12.784 -2.428 13.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.027 4.027 3 C -0.452 4.452 4 S 0.318 5.682 5 C -0.045 4.045 6 N -0.261 5.261 7 C -0.016 4.016 8 C -0.197 4.197 9 C 0.017 3.983 10 N -0.177 5.177 11 C -0.416 4.416 12 H 0.118 0.882 13 C -0.175 4.175 14 N -0.532 5.532 15 Si 0.758 3.242 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.194 1.194 19 C 0.347 3.653 20 O -0.435 6.435 21 N -0.202 5.202 22 H 0.092 0.908 23 H 0.089 0.911 24 H 0.095 0.905 25 H 0.188 0.812 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.575 12.372 -2.319 12.686 hybrid contribution -0.735 -0.779 0.006 1.071 sum 0.840 11.593 -2.313 11.852 Atomic orbital electron populations 1.20335 0.87610 1.02965 1.02705 1.20225 0.98023 0.86194 0.98240 1.26230 0.93425 1.03184 1.22328 1.83533 1.09253 1.00859 1.74566 1.23595 0.90218 0.91267 0.99371 1.44664 1.04728 1.03396 1.73315 1.21836 0.78596 0.99376 1.01822 1.22435 1.00471 0.96254 1.00563 1.21397 0.82173 0.93856 1.00825 1.42693 1.03954 1.03503 1.67594 1.19607 1.02571 0.80576 1.38845 0.88218 1.25331 0.96574 1.00276 0.95360 1.69990 1.15844 1.31845 1.35480 0.85834 0.79308 0.81334 0.77712 1.20430 1.20977 1.19362 1.15737 0.86325 0.79201 0.84061 1.90886 1.13015 1.82141 1.57447 1.66589 1.02289 1.29242 1.22075 0.90812 0.91125 0.90454 0.81232 0.90611 0.90678 0.88925 0.91135 0.91146 0.89511 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.31 36.01 0.37 -0.67 16 2 C 0.11 1.85 6.74 -84.20 -0.57 1.28 16 3 C -0.31 -4.53 11.11 29.05 0.32 -4.21 16 4 S 0.07 1.03 21.65 -107.50 -2.33 -1.30 16 5 C 0.33 6.68 7.63 -87.38 -0.67 6.01 16 6 N -0.53 -11.36 3.02 -123.14 -0.37 -11.74 16 7 C 0.11 1.73 6.16 -4.00 -0.02 1.71 16 8 C -0.16 -2.58 6.20 -26.49 -0.16 -2.74 16 9 C 0.14 3.07 4.75 -3.98 -0.02 3.05 16 10 N -0.45 -11.88 2.96 -120.51 -0.36 -12.24 16 11 C -0.29 -8.12 9.16 -14.93 -0.14 -8.26 16 12 H 0.10 2.97 7.33 -52.49 -0.38 2.59 16 13 C 0.03 0.71 5.08 -17.46 -0.09 0.62 16 14 N -0.89 -23.56 10.64 55.49 0.59 -22.97 16 15 Si 0.93 20.95 29.57 -169.99 -5.03 15.93 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 C 0.64 17.00 7.86 -88.07 -0.69 16.31 16 20 O -0.56 -16.82 14.21 5.29 0.08 -16.75 16 21 N -0.48 -10.66 8.46 -11.28 -0.10 -10.75 16 22 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 24 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 25 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 26 H 0.08 1.00 7.03 -51.93 -0.37 0.64 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.61 7.53 -51.93 -0.39 1.22 16 31 H 0.09 1.98 7.04 -51.93 -0.37 1.62 16 32 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 280.97 15.07 4.23 4.23 Total: -1.00 -33.71 280.97 -8.54 -42.25 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -3.60 Total: 0.22 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: -1.67 Total: 13.10 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.23 Total: -57.69 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: 0.08 Total: -16.75 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.93 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.33 Total: -1.30 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.71 -8.54 -42.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260371149.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.347 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds