Wall clock time and date at job start Mon Mar 30 2020 05:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33424 * 122.71131 * 2 1 4 4 S 1.76172 * 108.06689 * 179.72291 * 3 2 1 5 5 C 1.70970 * 90.34179 * 0.32759 * 4 3 2 6 6 N 1.38955 * 124.94652 * 179.97438 * 5 4 3 7 7 C 1.46373 * 119.32857 * 359.67524 * 6 5 4 8 8 C 1.53222 * 109.15085 * 209.10419 * 7 6 5 9 9 C 1.53244 * 108.57111 * 304.51499 * 8 7 6 10 10 N 1.46384 * 109.15150 * 55.46684 * 9 8 7 11 11 C 1.37164 * 119.32748 * 150.94114 * 10 9 8 12 12 H 1.07996 * 119.99468 * 204.13969 * 11 10 9 13 13 C 1.38883 * 120.00222 * 24.13935 * 11 10 9 14 14 N 1.31477 * 119.99682 * 11.20015 * 13 11 10 15 15 Si 1.86800 * 120.00055 * 191.20239 * 13 11 10 16 16 H 1.48504 * 109.46838 * 89.99752 * 15 13 11 17 17 H 1.48499 * 109.46919 * 209.99717 * 15 13 11 18 18 H 1.48498 * 109.46869 * 330.00141 * 15 13 11 19 19 C 1.34134 * 119.32802 * 179.70159 * 6 5 4 20 20 O 1.21583 * 118.70157 * 359.40080 * 19 6 5 21 21 N 1.29642 * 110.10741 * 359.66734 * 5 4 3 22 22 H 1.09001 * 109.47288 * 270.02559 * 1 2 3 23 23 H 1.09005 * 109.47085 * 30.02421 * 1 2 3 24 24 H 1.09002 * 109.46915 * 150.02098 * 1 2 3 25 25 H 1.08000 * 125.96956 * 359.97438 * 3 2 1 26 26 H 1.08997 * 109.52854 * 328.98799 * 7 6 5 27 27 H 1.09004 * 109.52651 * 89.11645 * 7 6 5 28 28 H 1.08998 * 109.62636 * 184.78361 * 8 7 6 29 29 H 1.08997 * 109.60116 * 64.23285 * 8 7 6 30 30 H 1.08996 * 109.52444 * 295.56394 * 9 8 7 31 31 H 1.08997 * 109.52336 * 175.36774 * 9 8 7 32 32 H 0.97004 * 119.99501 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2281 1.1226 0.0000 4 16 3.9326 0.6772 0.0081 5 6 3.5102 -0.9795 0.0009 6 7 4.4173 -2.0321 0.0024 7 6 5.8520 -1.7422 0.0033 8 6 6.5958 -2.8828 -0.6994 9 6 6.2318 -4.2014 -0.0086 10 7 4.7764 -4.3577 -0.0085 11 6 4.2361 -5.6184 -0.0200 12 1 3.2385 -5.7748 -0.4030 13 6 4.9719 -6.6937 0.4607 14 7 6.0870 -6.4829 1.1245 15 14 4.3774 -8.4395 0.1639 16 1 4.9416 -8.9441 -1.1137 17 1 4.8236 -9.3109 1.2805 18 1 2.8943 -8.4513 0.0890 19 6 3.9603 -3.2932 0.0023 20 8 2.7588 -3.4788 0.0122 21 7 2.2205 -1.1106 0.0005 22 1 -0.3634 0.0005 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 1.8355 2.1287 -0.0004 26 1 6.0352 -0.8074 -0.5265 27 1 6.2052 -1.6538 1.0307 28 1 7.6708 -2.7171 -0.6288 29 1 6.2969 -2.9236 -1.7468 30 1 6.5968 -4.1874 1.0184 31 1 6.6874 -5.0324 -0.5468 32 1 6.6011 -7.2340 1.4599 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260371149.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:28 Heat of formation + Delta-G solvation = 27.736456 kcal Electronic energy + Delta-G solvation = -18430.806414 eV Core-core repulsion = 15518.684910 eV Total energy + Delta-G solvation = -2912.121504 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.94096 -40.33783 -37.27404 -37.13285 -34.02599 -32.41185 -31.54522 -28.38354 -27.96329 -26.75752 -25.04066 -23.54937 -21.00321 -20.33937 -18.84683 -18.80144 -17.97145 -17.49758 -17.14076 -16.54326 -15.87185 -15.57544 -15.09576 -14.93209 -14.74130 -14.58508 -14.08931 -13.55611 -13.37217 -13.32150 -13.20274 -12.92363 -12.36645 -12.28021 -12.25258 -12.06293 -11.99477 -11.18091 -11.06335 -10.90056 -10.11248 -10.07442 -9.72943 -8.92003 -8.33142 -5.98252 -0.10078 0.08406 0.81541 1.38773 1.39997 1.51182 1.72393 1.91634 2.33126 2.42621 3.10271 3.14824 3.65011 3.78456 3.94569 4.21977 4.36008 4.43651 4.51018 4.59170 4.75071 4.78502 4.87199 4.94342 5.12531 5.26500 5.38494 5.43137 5.47351 5.75451 6.24049 6.56788 7.08948 7.20102 7.52573 8.07743 8.70902 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.029639 B = 0.006157 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.459900 B = 4546.630610 C = 5378.453389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.064 3.936 3 C -0.285 4.285 4 S 0.169 5.831 5 C 0.267 3.733 6 N -0.537 5.537 7 C 0.102 3.898 8 C -0.144 4.144 9 C 0.144 3.856 10 N -0.469 5.469 11 C -0.328 4.328 12 H 0.066 0.934 13 C -0.002 4.002 14 N -0.901 5.901 15 Si 0.994 3.006 16 H -0.262 1.262 17 H -0.271 1.271 18 H -0.281 1.281 19 C 0.639 3.361 20 O -0.616 6.616 21 N -0.537 5.537 22 H 0.080 0.920 23 H 0.109 0.891 24 H 0.051 0.949 25 H 0.216 0.784 26 H 0.114 0.886 27 H 0.088 0.912 28 H 0.142 0.858 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.750 15.456 -2.622 15.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.068 4.068 3 C -0.425 4.425 4 S 0.419 5.581 5 C -0.101 4.101 6 N -0.270 5.270 7 C -0.019 4.019 8 C -0.182 4.182 9 C 0.021 3.979 10 N -0.193 5.193 11 C -0.457 4.457 12 H 0.084 0.916 13 C -0.204 4.204 14 N -0.540 5.540 15 Si 0.817 3.183 16 H -0.187 1.187 17 H -0.196 1.196 18 H -0.206 1.206 19 C 0.340 3.660 20 O -0.496 6.496 21 N -0.260 5.260 22 H 0.098 0.902 23 H 0.127 0.873 24 H 0.070 0.930 25 H 0.232 0.768 26 H 0.132 0.868 27 H 0.106 0.894 28 H 0.160 0.840 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.129 15.110 -2.513 15.634 hybrid contribution -1.226 -1.410 0.099 1.871 sum 1.903 13.700 -2.414 14.041 Atomic orbital electron populations 1.20414 0.85815 1.03603 1.03359 1.20678 0.99513 0.86043 1.00539 1.26926 0.93582 1.04344 1.17663 1.83031 1.08232 0.94875 1.71982 1.23945 0.90355 0.93715 1.02082 1.44450 1.06805 1.02114 1.73635 1.22171 0.75722 1.00746 1.03255 1.22392 1.03357 0.93042 0.99453 1.21376 0.79591 0.96548 1.00345 1.42908 1.05658 1.03031 1.67739 1.19475 1.02174 0.82723 1.41287 0.91624 1.26050 0.96519 1.03340 0.94445 1.70071 1.16018 1.33085 1.34840 0.84935 0.78042 0.76790 0.78536 1.18733 1.19590 1.20628 1.16007 0.85720 0.80819 0.83404 1.90813 1.15364 1.83840 1.59624 1.66518 1.04258 1.32975 1.22276 0.90153 0.87262 0.92973 0.76754 0.86779 0.89352 0.84005 0.91438 0.92716 0.91318 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.93 10.31 71.24 0.73 -1.19 16 2 C 0.06 2.16 6.74 41.45 0.28 2.44 16 3 C -0.28 -7.22 11.11 66.73 0.74 -6.48 16 4 S 0.17 4.44 21.65 -56.49 -1.22 3.22 16 5 C 0.27 10.87 7.63 179.22 1.37 12.24 16 6 N -0.54 -23.34 3.02 -662.13 -2.00 -25.34 16 7 C 0.10 3.10 6.16 86.48 0.53 3.63 16 8 C -0.14 -4.45 6.20 30.75 0.19 -4.26 16 9 C 0.14 6.39 4.75 86.48 0.41 6.80 16 10 N -0.47 -25.84 2.96 -653.82 -1.94 -27.78 16 11 C -0.33 -19.67 9.16 84.01 0.77 -18.90 16 12 H 0.07 4.27 7.33 -2.91 -0.02 4.25 16 13 C 0.00 -0.13 5.08 84.90 0.43 0.30 16 14 N -0.90 -48.37 10.64 21.66 0.23 -48.14 16 15 Si 0.99 43.97 29.57 68.60 2.03 46.00 16 16 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 17 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 C 0.64 35.49 7.86 179.46 1.41 36.90 16 20 O -0.62 -39.85 14.21 -3.98 -0.06 -39.91 16 21 N -0.54 -24.41 8.46 -189.61 -1.60 -26.02 16 22 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.11 1.95 8.12 -2.38 -0.02 1.93 16 24 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.22 3.38 8.06 -2.91 -0.02 3.35 16 26 H 0.11 2.56 7.03 -2.39 -0.02 2.54 16 27 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.14 2.97 8.14 -2.39 -0.02 2.95 16 29 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.05 2.55 7.53 -2.39 -0.02 2.53 16 31 H 0.07 3.22 7.04 -2.39 -0.02 3.20 16 32 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -81.23 280.97 3.44 -77.79 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 1.14 Total: 8.70 kcal Atomic # 6 Polarization: 24.61 SS G_CDS: 6.87 Total: 31.48 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -5.31 Total: -127.28 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -0.06 Total: -39.91 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -1.22 Total: 3.22 kcal Total: -81.23 3.44 -77.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260371149.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.521 kcal (2) G-P(sol) polarization free energy of solvation -81.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds