Wall clock time and date at job start Mon Mar 30 2020 04:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.60068 * 2 1 4 4 O 1.43087 * 109.59704 * 239.68930 * 2 1 3 5 5 C 1.35450 * 116.91297 * 285.80381 * 4 2 1 6 6 C 1.47360 * 119.71447 * 146.53524 * 5 4 2 7 7 C 1.35204 * 123.08759 * 186.21152 * 6 5 4 8 8 S 1.70955 * 108.78291 * 179.87572 * 7 6 5 9 9 C 1.70792 * 91.05413 * 0.32834 * 8 7 6 10 10 N 1.28778 * 110.47102 * 359.80515 * 9 8 7 11 11 N 1.30727 * 120.57661 * 326.56468 * 5 4 2 12 12 N 1.40236 * 120.14523 * 0.08976 * 11 5 4 13 13 C 1.36806 * 120.46330 * 196.29525 * 12 11 5 14 14 H 1.07995 * 120.00443 * 196.33583 * 13 12 11 15 15 C 1.38681 * 119.99545 * 16.33471 * 13 12 11 16 16 N 1.31547 * 120.00090 * 190.23598 * 15 13 12 17 17 Si 1.86800 * 120.00112 * 10.24011 * 15 13 12 18 18 H 1.48501 * 109.46897 * 275.17737 * 17 15 13 19 19 H 1.48499 * 109.47151 * 35.17343 * 17 15 13 20 20 H 1.48501 * 109.47251 * 155.17728 * 17 15 13 21 21 C 1.35208 * 119.07855 * 16.57035 * 12 11 5 22 22 O 1.21303 * 120.69060 * 180.10873 * 21 12 11 23 23 H 1.08995 * 109.47137 * 180.31158 * 1 2 3 24 24 H 1.09001 * 109.46847 * 300.30990 * 1 2 3 25 25 H 1.08995 * 109.47304 * 60.30805 * 1 2 3 26 26 H 1.07998 * 125.60599 * 0.02562 * 7 6 5 27 27 H 1.08005 * 124.76493 * 179.80895 * 9 8 7 28 28 H 0.97008 * 119.99876 * 354.61929 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0268 0.0000 4 8 2.0099 -0.6803 -1.1637 5 6 1.9056 -2.0308 -1.1711 6 6 1.6530 -2.7370 -2.4395 7 6 1.4161 -4.0663 -2.5097 8 16 1.1698 -4.4958 -4.1460 9 6 1.4072 -2.8780 -4.6393 10 7 1.6428 -2.1264 -3.6204 11 7 2.0266 -2.7131 -0.0626 12 7 2.2646 -2.0502 1.1501 13 6 2.7180 -2.7407 2.2406 14 1 2.6505 -2.3008 3.2246 15 6 3.2641 -4.0056 2.0825 16 7 3.5138 -4.7508 3.1373 17 14 3.6453 -4.6512 0.3715 18 1 2.4221 -5.2577 -0.2126 19 1 4.1020 -3.5310 -0.4898 20 1 4.7147 -5.6780 0.4567 21 6 2.0345 -0.7202 1.2281 22 8 2.2323 -0.1172 2.2619 23 1 -0.3633 -1.0276 0.0056 24 1 -0.3633 0.5187 0.8872 25 1 -0.3634 0.5090 -0.8927 26 1 1.3850 -4.7446 -1.6700 27 1 1.3656 -2.5336 -5.6621 28 1 3.3896 -4.3875 4.0282 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260418430.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:56 Heat of formation + Delta-G solvation = 35.030916 kcal Electronic energy + Delta-G solvation = -18372.661293 eV Core-core repulsion = 15325.023006 eV Total energy + Delta-G solvation = -3047.638287 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.76984 -39.58475 -37.45593 -35.68562 -33.02582 -32.04133 -30.94047 -29.30534 -26.24899 -25.46221 -23.60890 -22.93912 -20.17159 -19.52521 -18.29202 -18.07289 -16.90311 -16.44437 -15.72465 -15.36602 -14.71119 -14.56744 -14.25529 -14.07519 -13.85508 -13.22925 -12.69402 -12.51970 -12.27086 -12.06080 -11.81175 -11.67497 -11.54858 -10.76002 -10.43119 -9.92288 -9.79199 -9.66037 -9.42335 -9.18889 -9.00203 -8.54791 -7.75175 -6.97654 -4.17990 0.55155 1.30715 1.58158 1.71073 2.80203 3.06904 3.28585 3.31429 3.41622 3.58482 3.84079 4.21185 4.30513 4.55261 4.98203 5.06394 5.17735 5.28143 5.40195 5.48094 5.68795 5.82668 6.08532 6.11537 6.28426 6.92745 7.56916 7.66419 7.97854 8.09764 8.72690 8.93619 9.34027 10.45155 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.018536 B = 0.009854 C = 0.006793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.192996 B = 2840.865647 C = 4120.644224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.080 3.920 3 H 0.142 0.858 4 O -0.321 6.321 5 C 0.297 3.703 6 C 0.122 3.878 7 C -0.253 4.253 8 S 0.194 5.806 9 C -0.003 4.003 10 N -0.432 5.432 11 N -0.283 5.283 12 N -0.269 5.269 13 C -0.382 4.382 14 H 0.116 0.884 15 C 0.027 3.973 16 N -0.861 5.861 17 Si 1.111 2.889 18 H -0.281 1.281 19 H -0.290 1.290 20 H -0.306 1.306 21 C 0.406 3.594 22 O -0.538 6.538 23 H 0.060 0.940 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.197 0.803 27 H 0.204 0.796 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.431 0.652 -16.751 17.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.020 3.980 3 H 0.160 0.840 4 O -0.226 6.226 5 C 0.076 3.924 6 C -0.012 4.012 7 C -0.396 4.396 8 S 0.447 5.553 9 C -0.303 4.303 10 N -0.145 5.145 11 N -0.117 5.117 12 N -0.077 5.077 13 C -0.509 4.509 14 H 0.134 0.866 15 C -0.182 4.182 16 N -0.494 5.494 17 Si 0.945 3.055 18 H -0.209 1.209 19 H -0.218 1.218 20 H -0.236 1.236 21 C 0.194 3.806 22 O -0.416 6.416 23 H 0.079 0.921 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.214 0.786 27 H 0.221 0.779 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.821 -1.202 -17.297 18.289 hybrid contribution -0.500 2.605 1.896 3.261 sum -6.321 1.403 -15.400 16.706 Atomic orbital electron populations 1.22312 0.93676 1.03420 1.03665 1.23001 0.95896 0.97433 0.81660 0.84024 1.86175 1.78082 1.16849 1.41479 1.21218 1.00571 0.80505 0.90154 1.17467 1.05866 0.88873 0.89011 1.26921 1.08894 0.99948 1.03850 1.82758 1.62786 1.12482 0.97282 1.28447 1.05325 0.93715 1.02790 1.66635 1.14004 1.36563 0.97322 1.74296 1.18426 1.26333 0.92616 1.44751 1.52697 1.05022 1.05269 1.20814 1.41252 1.02967 0.85903 0.86615 1.26583 0.92716 0.91920 1.07012 1.70905 1.43339 1.35494 0.99624 0.82790 0.75730 0.74706 0.72233 1.20863 1.21850 1.23606 1.21108 0.85786 0.82789 0.90882 1.90599 1.54137 1.65328 1.31552 0.92082 0.90123 0.90441 0.78581 0.77914 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.32 37.16 0.35 -2.45 15 2 C 0.08 1.57 3.91 -27.72 -0.11 1.46 15 3 H 0.14 2.38 8.14 -51.93 -0.42 1.96 15 4 O -0.32 -6.63 10.08 -18.04 -0.18 -6.81 15 5 C 0.30 6.34 6.81 -14.31 -0.10 6.24 15 6 C 0.12 2.18 6.69 -84.75 -0.57 1.61 15 7 C -0.25 -3.90 10.19 29.65 0.30 -3.60 15 8 S 0.19 1.97 22.97 -107.50 -2.47 -0.50 15 9 C 0.00 -0.03 12.18 51.48 0.63 0.59 15 10 N -0.43 -6.79 10.56 -12.43 -0.13 -6.92 15 11 N -0.28 -6.81 5.58 31.99 0.18 -6.63 15 12 N -0.27 -7.22 3.46 -10.89 -0.04 -7.26 15 13 C -0.38 -11.23 9.89 -15.17 -0.15 -11.38 15 14 H 0.12 3.64 7.57 -52.49 -0.40 3.24 15 15 C 0.03 0.78 5.49 -17.51 -0.10 0.69 15 16 N -0.86 -25.36 13.70 55.48 0.76 -24.60 15 17 Si 1.11 27.26 25.04 -169.99 -4.26 23.00 15 18 H -0.28 -6.12 5.27 56.52 0.30 -5.82 15 19 H -0.29 -7.17 6.52 56.52 0.37 -6.80 15 20 H -0.31 -7.42 7.11 56.52 0.40 -7.02 15 21 C 0.41 10.16 6.97 -10.62 -0.07 10.08 15 22 O -0.54 -14.82 16.88 5.54 0.09 -14.72 15 23 H 0.06 1.06 7.84 -51.93 -0.41 0.66 15 24 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 26 H 0.20 3.21 5.78 -52.49 -0.30 2.91 15 27 H 0.20 1.29 8.06 -52.48 -0.42 0.87 15 28 H 0.28 7.99 8.73 -40.82 -0.36 7.63 15 LS Contribution 261.03 15.07 3.93 3.93 Total: -1.00 -34.20 261.03 -4.02 -38.22 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -2.09 Total: -0.96 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 0.18 Total: 3.25 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.77 Total: -45.40 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.09 Total: -21.53 kcal Atomic # 14 Polarization: 27.26 SS G_CDS: -4.26 Total: 23.00 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.47 Total: -0.50 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -34.20 -4.02 -38.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260418430.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.247 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds