Wall clock time and date at job start Mon Mar 30 2020 04:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.60068 * 2 1 4 4 O 1.43087 * 109.59704 * 239.68930 * 2 1 3 5 5 C 1.35450 * 116.91297 * 285.80381 * 4 2 1 6 6 C 1.47360 * 119.71447 * 146.53524 * 5 4 2 7 7 C 1.35204 * 123.08759 * 186.21152 * 6 5 4 8 8 S 1.70955 * 108.78291 * 179.87572 * 7 6 5 9 9 C 1.70792 * 91.05413 * 0.32834 * 8 7 6 10 10 N 1.28778 * 110.47102 * 359.80515 * 9 8 7 11 11 N 1.30727 * 120.57661 * 326.56468 * 5 4 2 12 12 N 1.40236 * 120.14523 * 0.08976 * 11 5 4 13 13 C 1.36806 * 120.46330 * 196.29525 * 12 11 5 14 14 H 1.07995 * 120.00443 * 196.33583 * 13 12 11 15 15 C 1.38681 * 119.99545 * 16.33471 * 13 12 11 16 16 N 1.31547 * 120.00090 * 190.23598 * 15 13 12 17 17 Si 1.86800 * 120.00112 * 10.24011 * 15 13 12 18 18 H 1.48501 * 109.46897 * 275.17737 * 17 15 13 19 19 H 1.48499 * 109.47151 * 35.17343 * 17 15 13 20 20 H 1.48501 * 109.47251 * 155.17728 * 17 15 13 21 21 C 1.35208 * 119.07855 * 16.57035 * 12 11 5 22 22 O 1.21303 * 120.69060 * 180.10873 * 21 12 11 23 23 H 1.08995 * 109.47137 * 180.31158 * 1 2 3 24 24 H 1.09001 * 109.46847 * 300.30990 * 1 2 3 25 25 H 1.08995 * 109.47304 * 60.30805 * 1 2 3 26 26 H 1.07998 * 125.60599 * 0.02562 * 7 6 5 27 27 H 1.08005 * 124.76493 * 179.80895 * 9 8 7 28 28 H 0.97008 * 119.99876 * 354.61929 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0268 0.0000 4 8 2.0099 -0.6803 -1.1637 5 6 1.9056 -2.0308 -1.1711 6 6 1.6530 -2.7370 -2.4395 7 6 1.4161 -4.0663 -2.5097 8 16 1.1698 -4.4958 -4.1460 9 6 1.4072 -2.8780 -4.6393 10 7 1.6428 -2.1264 -3.6204 11 7 2.0266 -2.7131 -0.0626 12 7 2.2646 -2.0502 1.1501 13 6 2.7180 -2.7407 2.2406 14 1 2.6505 -2.3008 3.2246 15 6 3.2641 -4.0056 2.0825 16 7 3.5138 -4.7508 3.1373 17 14 3.6453 -4.6512 0.3715 18 1 2.4221 -5.2577 -0.2126 19 1 4.1020 -3.5310 -0.4898 20 1 4.7147 -5.6780 0.4567 21 6 2.0345 -0.7202 1.2281 22 8 2.2323 -0.1172 2.2619 23 1 -0.3633 -1.0276 0.0056 24 1 -0.3633 0.5187 0.8872 25 1 -0.3634 0.5090 -0.8927 26 1 1.3850 -4.7446 -1.6700 27 1 1.3656 -2.5336 -5.6621 28 1 3.3896 -4.3875 4.0282 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260418430.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:55 Heat of formation + Delta-G solvation = 6.540618 kcal Electronic energy + Delta-G solvation = -18373.896725 eV Core-core repulsion = 15325.023006 eV Total energy + Delta-G solvation = -3048.873719 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.46602 -40.81111 -39.28110 -37.55957 -34.97448 -33.77877 -32.44007 -30.77846 -27.73912 -27.09156 -25.14913 -24.55082 -21.67561 -21.18613 -19.94733 -19.57616 -18.68609 -17.92870 -17.39898 -16.79205 -16.49433 -16.12022 -15.67879 -15.59385 -15.49053 -14.62987 -14.37302 -14.26769 -13.97350 -13.44350 -13.41017 -13.26850 -12.84729 -12.53311 -12.22668 -11.93354 -11.40546 -11.03164 -10.76426 -10.72628 -10.57086 -10.25071 -9.51950 -9.18771 -6.43204 -0.62813 0.23739 0.34529 0.66817 1.20426 1.23787 1.35141 1.52199 1.70631 1.91133 2.10081 2.34609 2.59881 2.90588 3.34013 3.62369 3.74340 4.00480 4.10316 4.37953 4.44168 4.50853 4.64305 4.83848 4.90138 5.16032 5.37812 5.83012 6.07285 6.56250 6.66399 6.95164 7.36642 8.21313 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.018536 B = 0.009854 C = 0.006793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.192996 B = 2840.865647 C = 4120.644224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.088 3.912 3 H 0.173 0.827 4 O -0.323 6.323 5 C 0.338 3.662 6 C 0.081 3.919 7 C -0.271 4.271 8 S 0.316 5.684 9 C 0.007 3.993 10 N -0.467 5.467 11 N -0.319 5.319 12 N -0.296 5.296 13 C -0.402 4.402 14 H 0.072 0.928 15 C -0.009 4.009 16 N -0.888 5.888 17 Si 1.147 2.853 18 H -0.240 1.240 19 H -0.298 1.298 20 H -0.304 1.304 21 C 0.392 3.608 22 O -0.585 6.585 23 H 0.044 0.956 24 H 0.090 0.910 25 H 0.115 0.885 26 H 0.184 0.816 27 H 0.252 0.748 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.876 0.156 -22.222 23.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 H 0.190 0.810 4 O -0.227 6.227 5 C 0.116 3.884 6 C -0.054 4.054 7 C -0.415 4.415 8 S 0.571 5.429 9 C -0.292 4.292 10 N -0.181 5.181 11 N -0.152 5.152 12 N -0.104 5.104 13 C -0.529 4.529 14 H 0.090 0.910 15 C -0.212 4.212 16 N -0.521 5.521 17 Si 0.975 3.025 18 H -0.166 1.166 19 H -0.227 1.227 20 H -0.234 1.234 21 C 0.181 3.819 22 O -0.467 6.467 23 H 0.063 0.937 24 H 0.108 0.892 25 H 0.134 0.866 26 H 0.202 0.798 27 H 0.268 0.732 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.298 -1.731 -22.783 23.986 hybrid contribution -0.157 2.792 3.200 4.250 sum -7.455 1.061 -19.583 20.980 Atomic orbital electron populations 1.22290 0.90542 1.03116 1.06017 1.23221 0.98131 0.97488 0.78336 0.81018 1.86180 1.78169 1.16811 1.41578 1.22253 0.94359 0.80823 0.90995 1.17383 1.09707 0.89624 0.88647 1.27177 1.07598 0.99163 1.07577 1.82466 1.58838 1.10025 0.91552 1.29282 1.01957 0.94314 1.03629 1.66627 1.16286 1.37954 0.97237 1.74225 1.22709 1.26279 0.91968 1.44580 1.54333 1.05615 1.05850 1.20380 1.43335 1.03537 0.85656 0.91001 1.27828 0.91781 0.92012 1.09621 1.70971 1.45628 1.36048 0.99471 0.82414 0.77176 0.74220 0.68711 1.16584 1.22668 1.23387 1.22175 0.84951 0.82492 0.92276 1.90554 1.56443 1.66098 1.33627 0.93674 0.89156 0.86599 0.79836 0.73219 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.92 9.32 71.98 0.67 -4.25 15 2 C 0.09 3.34 3.91 29.95 0.12 3.45 15 3 H 0.17 5.46 8.14 -2.39 -0.02 5.44 15 4 O -0.32 -12.81 10.08 -87.47 -0.88 -13.69 15 5 C 0.34 14.00 6.81 87.26 0.59 14.59 15 6 C 0.08 2.67 6.69 40.68 0.27 2.94 15 7 C -0.27 -7.33 10.19 67.12 0.68 -6.64 15 8 S 0.32 4.46 22.97 -56.49 -1.30 3.16 15 9 C 0.01 0.10 12.18 130.69 1.59 1.69 15 10 N -0.47 -12.64 10.56 -193.24 -2.04 -14.68 15 11 N -0.32 -15.42 5.58 -166.45 -0.93 -16.35 15 12 N -0.30 -16.57 3.46 -306.50 -1.06 -17.63 15 13 C -0.40 -25.36 9.89 84.02 0.83 -24.53 15 14 H 0.07 5.00 7.57 -2.91 -0.02 4.98 15 15 C -0.01 -0.55 5.49 84.84 0.47 -0.09 15 16 N -0.89 -55.18 13.70 21.62 0.30 -54.88 15 17 Si 1.15 55.92 25.04 68.60 1.72 57.64 15 18 H -0.24 -9.96 5.27 99.48 0.52 -9.44 15 19 H -0.30 -14.64 6.52 99.48 0.65 -13.99 15 20 H -0.30 -14.41 7.11 99.48 0.71 -13.71 15 21 C 0.39 20.35 6.97 87.70 0.61 20.96 15 22 O -0.59 -34.19 16.88 -3.10 -0.05 -34.24 15 23 H 0.04 1.51 7.84 -2.39 -0.02 1.50 15 24 H 0.09 2.60 8.14 -2.39 -0.02 2.58 15 25 H 0.12 2.66 8.14 -2.39 -0.02 2.64 15 26 H 0.18 5.45 5.78 -2.91 -0.02 5.43 15 27 H 0.25 1.23 8.06 -2.91 -0.02 1.21 15 28 H 0.26 16.50 8.73 -92.70 -0.81 15.69 15 Total: -1.00 -82.74 261.03 2.52 -80.22 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: 0.93 Total: 2.33 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 5.84 Total: 8.13 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -3.74 Total: -103.55 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -0.93 Total: -47.94 kcal Atomic # 14 Polarization: 55.92 SS G_CDS: 1.72 Total: 57.64 kcal Atomic # 16 Polarization: 4.46 SS G_CDS: -1.30 Total: 3.16 kcal Total: -82.74 2.52 -80.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260418430.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.763 kcal (2) G-P(sol) polarization free energy of solvation -82.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds