Wall clock time and date at job start Mon Mar 30 2020 04:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.59724 * 2 1 4 4 O 1.43090 * 109.72411 * 120.38523 * 2 1 3 5 5 C 1.35448 * 116.91076 * 165.57511 * 4 2 1 6 6 C 1.47362 * 119.71417 * 146.54538 * 5 4 2 7 7 C 1.35203 * 123.08145 * 179.97438 * 6 5 4 8 8 S 1.70956 * 108.78396 * 179.97438 * 7 6 5 9 9 C 1.70797 * 91.04982 * 359.97438 * 8 7 6 10 10 N 1.28787 * 110.47177 * 359.73015 * 9 8 7 11 11 N 1.30605 * 120.53664 * 326.27735 * 5 4 2 12 12 N 1.40236 * 120.24560 * 0.62641 * 11 5 4 13 13 C 1.36797 * 120.46216 * 196.06039 * 12 11 5 14 14 H 1.08000 * 120.00384 * 179.72352 * 13 12 11 15 15 C 1.38675 * 120.00050 * 359.72501 * 13 12 11 16 16 N 1.31544 * 120.00251 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99824 * 179.72433 * 15 13 12 18 18 H 1.48500 * 109.47088 * 90.00236 * 17 15 13 19 19 H 1.48506 * 109.46781 * 209.99612 * 17 15 13 20 20 H 1.48494 * 109.47142 * 329.99713 * 17 15 13 21 21 C 1.35204 * 119.07179 * 15.78987 * 12 11 5 22 22 O 1.21301 * 120.68557 * 180.64035 * 21 12 11 23 23 H 1.09006 * 109.47033 * 180.30796 * 1 2 3 24 24 H 1.09000 * 109.47565 * 300.30728 * 1 2 3 25 25 H 1.08997 * 109.47211 * 60.31125 * 1 2 3 26 26 H 1.08004 * 125.60964 * 359.97438 * 7 6 5 27 27 H 1.08003 * 124.76367 * 180.02562 * 9 8 7 28 28 H 0.97000 * 120.00549 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0269 0.0000 4 8 2.0129 -0.6813 1.1619 5 6 3.3209 -1.0331 1.1670 6 6 4.0725 -1.0327 2.4346 7 6 5.3786 -1.3719 2.5182 8 16 5.8772 -1.2443 4.1484 9 6 4.3134 -0.7454 4.6205 10 7 3.5303 -0.6920 3.5995 11 7 3.9198 -1.3775 0.0586 12 7 3.2165 -1.3743 -1.1547 13 6 3.7146 -2.0306 -2.2467 14 1 3.1647 -2.0270 -3.1762 15 6 4.9257 -2.7005 -2.1603 16 7 5.5959 -2.7045 -1.0283 17 14 5.6021 -3.6032 -3.6493 18 1 6.4526 -2.6804 -4.4433 19 1 6.4151 -4.7614 -3.1988 20 1 4.4765 -4.0853 -4.4893 21 6 2.0367 -0.7181 -1.2284 22 8 1.3985 -0.7061 -2.2599 23 1 -0.3633 -1.0277 0.0055 24 1 -0.3634 0.5186 0.8872 25 1 -0.3633 0.5090 -0.8927 26 1 6.0041 -1.6738 1.6911 27 1 4.0234 -0.5037 5.6323 28 1 6.4429 -3.1734 -0.9677 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260418437.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:57 Heat of formation + Delta-G solvation = 21.292427 kcal Electronic energy + Delta-G solvation = -18084.047379 eV Core-core repulsion = 15035.813347 eV Total energy + Delta-G solvation = -3048.234032 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.04327 -40.64877 -38.99545 -37.27000 -34.53642 -33.39976 -32.23149 -30.53736 -27.72355 -26.84450 -25.00081 -24.31532 -21.53425 -20.77503 -19.97993 -19.07107 -18.71144 -17.43086 -17.01312 -16.73376 -16.21246 -15.84547 -15.53502 -15.41879 -15.06774 -14.22944 -14.09426 -13.78871 -13.65098 -13.19412 -13.02701 -12.84040 -12.78867 -12.56492 -12.31264 -12.12582 -11.64054 -11.00985 -10.68556 -10.57756 -10.40888 -10.10400 -9.23974 -8.28296 -6.09089 -0.37247 0.45418 0.54452 0.77982 1.31877 1.35458 1.48409 1.60725 1.69224 2.12418 2.26517 2.34989 2.84902 3.10632 3.51500 3.79946 3.81929 4.24147 4.33456 4.63468 4.66341 4.70693 4.88660 5.03617 5.08086 5.33752 5.46298 5.97136 6.43204 6.70765 6.88969 7.36342 7.69148 8.67069 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.016441 B = 0.008447 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.675630 B = 3313.989121 C = 4959.933413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.085 3.915 3 H 0.098 0.902 4 O -0.340 6.340 5 C 0.263 3.737 6 C 0.092 3.908 7 C -0.250 4.250 8 S 0.291 5.709 9 C -0.001 4.001 10 N -0.474 5.474 11 N -0.205 5.205 12 N -0.288 5.288 13 C -0.367 4.367 14 H 0.101 0.899 15 C 0.008 3.992 16 N -0.831 5.831 17 Si 1.001 2.999 18 H -0.265 1.265 19 H -0.264 1.264 20 H -0.272 1.272 21 C 0.369 3.631 22 O -0.587 6.587 23 H 0.054 0.946 24 H 0.104 0.896 25 H 0.093 0.907 26 H 0.179 0.821 27 H 0.248 0.752 28 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.064 3.206 13.906 14.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.025 3.975 3 H 0.116 0.884 4 O -0.246 6.246 5 C 0.038 3.962 6 C -0.042 4.042 7 C -0.394 4.394 8 S 0.545 5.455 9 C -0.299 4.299 10 N -0.188 5.188 11 N -0.034 5.034 12 N -0.095 5.095 13 C -0.494 4.494 14 H 0.118 0.882 15 C -0.200 4.200 16 N -0.464 5.464 17 Si 0.822 3.178 18 H -0.190 1.190 19 H -0.188 1.188 20 H -0.196 1.196 21 C 0.158 3.842 22 O -0.470 6.470 23 H 0.073 0.927 24 H 0.123 0.877 25 H 0.112 0.888 26 H 0.196 0.804 27 H 0.264 0.736 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.777 2.864 13.831 14.621 hybrid contribution -0.990 -0.170 -1.956 2.199 sum 2.787 2.694 11.875 12.492 Atomic orbital electron populations 1.21602 0.87093 1.03607 1.04860 1.22781 0.99543 0.95322 0.79849 0.88436 1.86053 1.23587 1.73666 1.41314 1.22894 0.81482 0.98986 0.92875 1.17385 0.90309 1.07645 0.88842 1.26790 0.99170 1.07271 1.06179 1.82265 1.12505 1.57147 0.93612 1.29184 0.94128 1.03327 1.03310 1.66626 1.36977 1.17407 0.97777 1.76545 1.21880 1.15181 0.89767 1.44911 1.15868 1.42132 1.06585 1.19760 1.06839 1.32859 0.89929 0.88175 1.26250 0.95447 0.97047 1.01254 1.70316 1.13388 1.37498 1.25198 0.84858 0.78192 0.77862 0.76846 1.19031 1.18828 1.19645 1.22116 0.82912 0.87015 0.92113 1.90483 1.57659 1.65715 1.33175 0.92671 0.87701 0.88795 0.80355 0.73630 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.93 9.21 71.98 0.66 -3.27 15 2 C 0.09 3.71 3.77 29.96 0.11 3.82 15 3 H 0.10 3.87 8.14 -2.39 -0.02 3.85 15 4 O -0.34 -15.64 10.00 -87.45 -0.87 -16.52 15 5 C 0.26 12.62 7.57 87.28 0.66 13.28 15 6 C 0.09 3.62 6.69 40.68 0.27 3.89 15 7 C -0.25 -8.41 10.58 67.12 0.71 -7.70 15 8 S 0.29 5.72 22.97 -56.49 -1.30 4.42 15 9 C 0.00 -0.02 12.18 130.69 1.59 1.57 15 10 N -0.47 -15.70 10.56 -193.24 -2.04 -17.74 15 11 N -0.20 -11.15 8.32 -166.57 -1.39 -12.53 15 12 N -0.29 -16.96 3.61 -306.51 -1.11 -18.07 15 13 C -0.37 -22.13 9.66 84.02 0.81 -21.31 15 14 H 0.10 6.19 7.22 -2.91 -0.02 6.17 15 15 C 0.01 0.44 5.48 84.84 0.47 0.90 15 16 N -0.83 -45.14 11.34 21.62 0.25 -44.90 15 17 Si 1.00 42.50 29.55 68.60 2.03 44.53 15 18 H -0.27 -10.81 7.11 99.48 0.71 -10.10 15 19 H -0.26 -10.43 7.11 99.48 0.71 -9.72 15 20 H -0.27 -11.61 7.11 99.48 0.71 -10.91 15 21 C 0.37 20.21 7.39 87.70 0.65 20.86 15 22 O -0.59 -34.29 15.97 -3.09 -0.05 -34.34 15 23 H 0.05 2.00 8.14 -2.38 -0.02 1.98 15 24 H 0.10 2.82 8.14 -2.39 -0.02 2.80 15 25 H 0.09 3.07 7.89 -2.39 -0.02 3.06 15 26 H 0.18 6.82 7.97 -2.91 -0.02 6.80 15 27 H 0.25 2.54 8.06 -2.91 -0.02 2.52 15 28 H 0.27 13.43 8.31 -92.71 -0.77 12.66 15 Total: -1.00 -76.68 270.07 2.66 -74.02 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 1.21 Total: 9.10 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 5.94 Total: 12.04 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -4.29 Total: -93.24 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -0.92 Total: -50.86 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: 5.72 SS G_CDS: -1.30 Total: 4.42 kcal Total: -76.68 2.66 -74.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260418437.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.311 kcal (2) G-P(sol) polarization free energy of solvation -76.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds