Wall clock time and date at job start Mon Mar 30 2020 04:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1 5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 11 11 N 1.46896 * 109.46997 * 300.00267 * 9 7 2 12 12 C 1.50701 * 109.47064 * 180.02562 * 9 7 2 13 13 C 1.37642 * 119.47251 * 100.00138 * 12 9 7 14 14 C 1.38205 * 120.44799 * 180.02562 * 13 12 9 15 15 C 1.38254 * 119.13575 * 0.25247 * 14 13 12 16 16 C 1.37925 * 120.22891 * 359.89643 * 15 14 13 17 17 C 1.38317 * 121.48573 * 359.34979 * 16 15 14 18 18 C 1.50911 * 115.77148 * 180.91771 * 17 16 15 19 19 C 1.54259 * 110.91116 * 339.73917 * 18 17 16 20 20 S 1.77609 * 130.67669 * 179.45834 * 16 15 14 21 21 O 1.42098 * 105.49120 * 309.42785 * 20 16 15 22 22 O 1.42103 * 105.49555 * 79.87539 * 20 16 15 23 23 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 24 24 H 1.00907 * 110.99811 * 176.04301 * 11 9 7 25 25 H 1.00900 * 111.00550 * 300.00040 * 11 9 7 26 26 H 1.08001 * 119.77282 * 0.08768 * 13 12 9 27 27 H 1.07995 * 120.43387 * 180.27434 * 14 13 12 28 28 H 1.08004 * 119.88915 * 179.86937 * 15 14 13 29 29 H 1.08992 * 109.36410 * 219.22200 * 18 17 16 30 30 H 1.09003 * 108.97758 * 100.00306 * 18 17 16 31 31 H 1.09004 * 111.19861 * 269.65138 * 19 18 17 32 32 H 1.09005 * 111.23720 * 145.32476 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5568 -0.8903 11 7 0.4070 -2.5772 1.1992 12 6 2.2304 -3.6446 -0.0005 13 6 2.5123 -4.2946 1.1796 14 6 3.4076 -5.3472 1.2028 15 6 4.0206 -5.7356 0.0261 16 6 3.7376 -5.0796 -1.1537 17 6 2.8331 -4.0342 -1.2000 18 6 2.6051 -3.4235 -2.5611 19 6 3.7753 -3.7472 -3.5127 20 16 4.3617 -5.3322 -2.7972 21 8 5.7766 -5.3537 -2.6667 22 8 3.6345 -6.4384 -3.3137 23 1 -0.4850 0.8400 0.0004 24 1 -0.1570 -3.4139 1.1906 25 1 0.9652 -2.5260 2.0381 26 1 2.0298 -3.9805 2.0933 27 1 3.6253 -5.8598 2.1281 28 1 4.7238 -6.5553 0.0306 29 1 2.5126 -2.3422 -2.4611 30 1 1.6815 -3.8239 -2.9791 31 1 4.5489 -2.9811 -3.4609 32 1 3.4260 -3.8821 -4.5364 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260535580.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:37 Heat of formation + Delta-G solvation = -35.286302 kcal Electronic energy + Delta-G solvation = -18388.672989 eV Core-core repulsion = 15441.525862 eV Total energy + Delta-G solvation = -2947.147127 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.44094 -36.95435 -35.81420 -34.86899 -34.46688 -31.86010 -29.62439 -29.20298 -26.23290 -24.27292 -23.38053 -21.23795 -20.56492 -18.56344 -16.84027 -16.63439 -16.41154 -15.91761 -15.35908 -14.89196 -14.61777 -14.35800 -14.12267 -13.61164 -12.97413 -12.87062 -12.67727 -12.36750 -12.03751 -11.98617 -11.90228 -11.61119 -11.43503 -11.18080 -10.92676 -10.74474 -10.44256 -10.21036 -9.82082 -9.50638 -8.83386 -8.58148 -8.06157 -7.26902 -6.02483 -4.19539 0.23204 1.23341 1.70151 2.83813 3.24873 3.31007 3.33362 3.66936 3.90263 4.30574 4.37021 4.53436 4.76178 5.08699 5.13995 5.20939 5.33320 5.50867 5.58782 5.78700 5.85310 5.96672 6.09151 6.29593 6.37490 6.49261 6.65664 6.77642 7.25941 7.29106 7.75001 7.99944 8.45734 8.82564 8.97657 9.50509 11.01240 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.023373 B = 0.006936 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.681885 B = 4036.134302 C = 4615.339011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.086 3.914 3 Si 0.885 3.115 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.536 4.536 8 H 0.054 0.946 9 C 0.251 3.749 10 H 0.053 0.947 11 N -0.812 5.812 12 C -0.071 4.071 13 C -0.087 4.087 14 C -0.135 4.135 15 C -0.028 4.028 16 C -0.632 4.632 17 C -0.033 4.033 18 C -0.095 4.095 19 C -0.565 4.565 20 S 2.465 3.535 21 O -0.944 6.944 22 O -0.939 6.939 23 H 0.258 0.742 24 H 0.300 0.700 25 H 0.319 0.681 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.100 0.900 31 H 0.144 0.856 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.211 -7.854 -3.371 10.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.121 4.121 3 Si 0.712 3.288 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.574 4.574 8 H 0.072 0.928 9 C 0.141 3.859 10 H 0.071 0.929 11 N -0.339 5.339 12 C -0.074 4.074 13 C -0.105 4.105 14 C -0.154 4.154 15 C -0.047 4.047 16 C -0.720 4.720 17 C -0.035 4.035 18 C -0.132 4.132 19 C -0.696 4.696 20 S 2.648 3.352 21 O -0.941 6.941 22 O -0.936 6.936 23 H 0.068 0.932 24 H 0.111 0.889 25 H 0.133 0.867 26 H 0.144 0.856 27 H 0.144 0.856 28 H 0.139 0.861 29 H 0.146 0.854 30 H 0.119 0.881 31 H 0.162 0.838 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.171 -7.815 -4.020 10.196 hybrid contribution 0.539 0.784 0.897 1.307 sum 5.710 -7.031 -3.123 9.581 Atomic orbital electron populations 1.70080 1.05686 1.26106 1.45817 1.24941 0.94645 0.98566 0.93994 0.86812 0.79752 0.83545 0.78685 1.20251 1.21244 1.20292 1.20718 0.92171 0.89117 1.55432 0.92764 1.18291 0.87509 0.88801 0.91278 0.92891 1.59123 1.28093 1.42262 1.04388 1.21699 0.98113 0.96915 0.90701 1.21080 0.96698 0.94557 0.98156 1.21210 0.98182 0.98302 0.97754 1.19977 0.97018 0.97218 0.90500 1.30146 1.14026 1.08362 1.19449 1.20264 0.94637 0.93092 0.95490 1.20726 0.96774 1.06998 0.88728 1.30266 1.09513 1.20690 1.09154 1.06521 0.74755 0.77563 0.76380 1.93566 1.28169 1.86949 1.85446 1.93602 1.73645 1.47512 1.78865 0.93167 0.88901 0.86738 0.85625 0.85646 0.86093 0.85437 0.88148 0.83761 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.97 12.77 55.43 0.71 -22.26 16 2 C 0.09 2.24 5.39 -17.82 -0.10 2.14 16 3 Si 0.88 20.13 29.54 -169.99 -5.02 15.11 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -13.42 8.15 -34.44 -0.28 -13.70 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.25 5.63 2.37 -70.02 -0.17 5.46 16 10 H 0.05 1.29 7.77 -51.93 -0.40 0.88 16 11 N -0.81 -17.48 8.00 -6.65 -0.05 -17.53 16 12 C -0.07 -1.38 5.04 -104.26 -0.53 -1.90 16 13 C -0.09 -1.50 9.19 -39.81 -0.37 -1.86 16 14 C -0.14 -2.08 10.10 -39.59 -0.40 -2.48 16 15 C -0.03 -0.44 10.02 -39.69 -0.40 -0.84 16 16 C -0.63 -10.52 6.16 -39.67 -0.24 -10.76 16 17 C -0.03 -0.58 5.92 -103.92 -0.62 -1.19 16 18 C -0.09 -1.42 5.51 -27.12 -0.15 -1.57 16 19 C -0.56 -6.49 7.66 37.82 0.29 -6.20 16 20 S 2.46 35.41 6.15 -107.50 -0.66 34.75 16 21 O -0.94 -15.80 18.01 -57.36 -1.03 -16.83 16 22 O -0.94 -15.64 18.01 -57.36 -1.03 -16.68 16 23 H 0.26 6.80 8.31 -40.82 -0.34 6.47 16 24 H 0.30 5.75 9.05 -39.29 -0.36 5.39 16 25 H 0.32 6.51 7.23 -39.29 -0.28 6.23 16 26 H 0.13 2.00 6.15 -52.49 -0.32 1.68 16 27 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 28 H 0.12 1.61 8.06 -52.48 -0.42 1.18 16 29 H 0.13 2.11 7.36 -51.93 -0.38 1.73 16 30 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.14 1.46 8.14 -51.93 -0.42 1.03 16 32 H 0.14 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 283.45 15.07 4.27 4.27 Total: -1.00 -32.46 283.45 -9.18 -41.63 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -3.40 Total: 10.44 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: -2.95 Total: -32.91 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.65 Total: -39.79 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -2.07 Total: -33.50 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 35.41 SS G_CDS: -0.66 Total: 34.75 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.46 -9.18 -41.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260535580.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.346 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds