Wall clock time and date at job start Mon Mar 30 2020 04:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1 5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 11 11 N 1.46896 * 109.46997 * 300.00267 * 9 7 2 12 12 C 1.50701 * 109.47064 * 180.02562 * 9 7 2 13 13 C 1.37642 * 119.47251 * 100.00138 * 12 9 7 14 14 C 1.38205 * 120.44799 * 180.02562 * 13 12 9 15 15 C 1.38254 * 119.13575 * 0.25247 * 14 13 12 16 16 C 1.37925 * 120.22891 * 359.89643 * 15 14 13 17 17 C 1.38317 * 121.48573 * 359.34979 * 16 15 14 18 18 C 1.50911 * 115.77148 * 180.91771 * 17 16 15 19 19 C 1.54259 * 110.91116 * 339.73917 * 18 17 16 20 20 S 1.77609 * 130.67669 * 179.45834 * 16 15 14 21 21 O 1.42098 * 105.49120 * 309.42785 * 20 16 15 22 22 O 1.42103 * 105.49555 * 79.87539 * 20 16 15 23 23 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 24 24 H 1.00907 * 110.99811 * 176.04301 * 11 9 7 25 25 H 1.00900 * 111.00550 * 300.00040 * 11 9 7 26 26 H 1.08001 * 119.77282 * 0.08768 * 13 12 9 27 27 H 1.07995 * 120.43387 * 180.27434 * 14 13 12 28 28 H 1.08004 * 119.88915 * 179.86937 * 15 14 13 29 29 H 1.08992 * 109.36410 * 219.22200 * 18 17 16 30 30 H 1.09003 * 108.97758 * 100.00306 * 18 17 16 31 31 H 1.09004 * 111.19861 * 269.65138 * 19 18 17 32 32 H 1.09005 * 111.23720 * 145.32476 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5568 -0.8903 11 7 0.4070 -2.5772 1.1992 12 6 2.2304 -3.6446 -0.0005 13 6 2.5123 -4.2946 1.1796 14 6 3.4076 -5.3472 1.2028 15 6 4.0206 -5.7356 0.0261 16 6 3.7376 -5.0796 -1.1537 17 6 2.8331 -4.0342 -1.2000 18 6 2.6051 -3.4235 -2.5611 19 6 3.7753 -3.7472 -3.5127 20 16 4.3617 -5.3322 -2.7972 21 8 5.7766 -5.3537 -2.6667 22 8 3.6345 -6.4384 -3.3137 23 1 -0.4850 0.8400 0.0004 24 1 -0.1570 -3.4139 1.1906 25 1 0.9652 -2.5260 2.0381 26 1 2.0298 -3.9805 2.0933 27 1 3.6253 -5.8598 2.1281 28 1 4.7238 -6.5553 0.0306 29 1 2.5126 -2.3422 -2.4611 30 1 1.6815 -3.8239 -2.9791 31 1 4.5489 -2.9811 -3.4609 32 1 3.4260 -3.8821 -4.5364 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260535580.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:37 Heat of formation + Delta-G solvation = -59.812941 kcal Electronic energy + Delta-G solvation = -18389.736543 eV Core-core repulsion = 15441.525862 eV Total energy + Delta-G solvation = -2948.210681 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.75595 -38.17682 -37.03980 -36.50347 -35.67571 -33.71810 -30.90509 -30.56814 -28.05570 -25.45057 -24.91649 -22.58977 -21.96260 -19.78775 -18.53357 -18.09738 -17.58760 -17.12701 -16.62340 -16.54597 -16.22708 -15.72572 -15.43787 -15.01365 -14.33399 -14.29988 -14.02502 -13.71118 -13.45535 -13.25270 -13.14332 -13.10987 -12.83842 -12.71829 -12.57393 -12.34581 -11.75794 -11.69281 -11.34568 -11.21776 -10.56007 -10.13674 -9.47562 -8.94309 -7.98729 -6.20181 -0.87775 -0.04974 0.38001 1.43725 1.46351 1.51986 1.68369 2.42822 2.53638 2.65885 3.22045 3.25057 3.45604 3.63526 3.86909 4.08263 4.12033 4.27389 4.45787 4.47351 4.63337 4.69426 4.81543 4.95726 5.06789 5.20905 5.28068 5.36114 5.66037 5.75709 5.95746 6.16623 6.64375 7.08065 7.23528 7.52593 9.03860 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.023373 B = 0.006936 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.681885 B = 4036.134302 C = 4615.339011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.042 3.958 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.537 4.537 8 H 0.046 0.954 9 C 0.258 3.742 10 H 0.025 0.975 11 N -0.824 5.824 12 C -0.101 4.101 13 C -0.095 4.095 14 C -0.132 4.132 15 C -0.038 4.038 16 C -0.648 4.648 17 C -0.047 4.047 18 C -0.102 4.102 19 C -0.535 4.535 20 S 2.483 3.517 21 O -0.968 6.968 22 O -0.963 6.963 23 H 0.256 0.744 24 H 0.313 0.687 25 H 0.325 0.675 26 H 0.133 0.867 27 H 0.162 0.838 28 H 0.147 0.853 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.165 0.835 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.460 -8.258 -3.853 11.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.576 4.576 8 H 0.064 0.936 9 C 0.148 3.852 10 H 0.043 0.957 11 N -0.352 5.352 12 C -0.105 4.105 13 C -0.113 4.113 14 C -0.150 4.150 15 C -0.057 4.057 16 C -0.734 4.734 17 C -0.049 4.049 18 C -0.139 4.139 19 C -0.668 4.668 20 S 2.668 3.332 21 O -0.965 6.965 22 O -0.960 6.960 23 H 0.065 0.935 24 H 0.125 0.875 25 H 0.138 0.862 26 H 0.151 0.849 27 H 0.179 0.821 28 H 0.164 0.836 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.183 0.817 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.437 -8.248 -4.477 11.380 hybrid contribution 0.162 0.850 1.051 1.361 sum 6.599 -7.398 -3.426 10.489 Atomic orbital electron populations 1.70197 1.06899 1.26456 1.47587 1.25573 0.95265 1.01362 0.94030 0.85935 0.78572 0.80208 0.78691 1.19347 1.21369 1.20485 1.20962 0.91896 0.90542 1.54155 0.93592 1.17923 0.87642 0.89221 0.90393 0.95680 1.58956 1.28542 1.43311 1.04388 1.21497 0.99109 0.97300 0.92558 1.21266 0.97229 0.95072 0.97740 1.21589 0.96853 0.97410 0.99182 1.20506 0.97058 0.97578 0.90509 1.30582 1.13753 1.08010 1.21085 1.20557 0.94624 0.93645 0.96087 1.20804 0.98915 1.05661 0.88554 1.30243 1.08320 1.18088 1.10197 1.06065 0.73713 0.78176 0.75273 1.93531 1.29629 1.87782 1.85577 1.93567 1.73876 1.49818 1.78777 0.93521 0.87534 0.86171 0.84895 0.82087 0.83552 0.87256 0.86976 0.81744 0.79718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.41 12.77 21.45 0.27 -48.14 16 2 C 0.04 2.19 5.39 84.65 0.46 2.65 16 3 Si 0.94 41.38 29.54 68.60 2.03 43.41 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.54 -27.15 8.15 25.60 0.21 -26.94 16 8 H 0.05 2.35 7.74 -2.91 -0.02 2.32 16 9 C 0.26 11.78 2.37 43.43 0.10 11.88 16 10 H 0.03 1.27 7.77 -2.39 -0.02 1.25 16 11 N -0.82 -35.93 8.00 -174.95 -1.40 -37.32 16 12 C -0.10 -3.95 5.04 -19.63 -0.10 -4.04 16 13 C -0.09 -3.20 9.19 22.12 0.20 -3.00 16 14 C -0.13 -3.77 10.10 22.27 0.22 -3.55 16 15 C -0.04 -1.12 10.02 22.20 0.22 -0.90 16 16 C -0.65 -20.69 6.16 22.21 0.14 -20.55 16 17 C -0.05 -1.64 5.92 -19.41 -0.11 -1.75 16 18 C -0.10 -2.93 5.51 30.34 0.17 -2.77 16 19 C -0.54 -10.69 7.66 72.41 0.55 -10.14 16 20 S 2.48 66.57 6.15 -56.49 -0.35 66.22 16 21 O -0.97 -30.62 18.01 -127.82 -2.30 -32.92 16 22 O -0.96 -30.50 18.01 -127.82 -2.30 -32.80 16 23 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 24 H 0.31 12.13 9.05 -89.69 -0.81 11.31 16 25 H 0.32 13.34 7.23 -89.69 -0.65 12.69 16 26 H 0.13 4.15 6.15 -2.91 -0.02 4.13 16 27 H 0.16 3.35 8.06 -2.91 -0.02 3.32 16 28 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 29 H 0.11 3.60 7.36 -2.39 -0.02 3.58 16 30 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.16 2.74 8.14 -2.38 -0.02 2.72 16 32 H 0.19 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -69.76 283.45 -2.28 -72.04 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: -0.29 Total: 28.64 kcal Atomic # 6 Polarization: -61.18 SS G_CDS: 2.06 Total: -59.12 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -1.13 Total: -85.46 kcal Atomic # 8 Polarization: -61.12 SS G_CDS: -4.60 Total: -65.73 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: 66.57 SS G_CDS: -0.35 Total: 66.22 kcal Total: -69.76 -2.28 -72.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260535580.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.224 kcal (2) G-P(sol) polarization free energy of solvation -69.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds