Wall clock time and date at job start Mon Mar 30 2020 04:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 N 1.46899 * 109.47038 * 59.71978 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.37644 * 119.46494 * 264.72215 * 12 9 7 14 14 C 1.38216 * 120.43985 * 179.90392 * 13 12 9 15 15 C 1.38247 * 119.13843 * 0.34346 * 14 13 12 16 16 C 1.37932 * 120.22265 * 359.67915 * 15 14 13 17 17 C 1.38301 * 121.50304 * 0.33488 * 16 15 14 18 18 C 1.50907 * 115.78842 * 179.26849 * 17 16 15 19 19 C 1.54261 * 110.87251 * 20.34465 * 18 17 16 20 20 S 1.77615 * 130.66416 * 180.52755 * 16 15 14 21 21 O 1.42105 * 105.49354 * 50.30693 * 20 16 15 22 22 O 1.42104 * 105.49353 * 279.86071 * 20 16 15 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.00903 * 111.00048 * 60.00129 * 11 9 7 25 25 H 1.00904 * 110.99882 * 183.95319 * 11 9 7 26 26 H 1.07998 * 119.78108 * 0.16827 * 13 12 9 27 27 H 1.08006 * 120.42628 * 180.08871 * 14 13 12 28 28 H 1.07998 * 119.88883 * 179.70487 * 15 14 13 29 29 H 1.08999 * 109.20588 * 140.72010 * 18 17 16 30 30 H 1.08998 * 109.20794 * 259.97395 * 18 17 16 31 31 H 1.08998 * 111.19921 * 90.27606 * 19 18 17 32 32 H 1.09001 * 111.20193 * 214.62531 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5609 0.8844 11 7 0.4065 -2.5716 -1.2052 12 6 2.2302 -3.6447 -0.0104 13 6 2.5865 -4.2256 -1.2063 14 6 3.4844 -5.2760 -1.2345 15 6 4.0147 -5.7404 -0.0452 16 6 3.6544 -5.1555 1.1509 17 6 2.7576 -4.1038 1.1999 18 6 2.4426 -3.5733 2.5771 19 6 3.5441 -3.9667 3.5829 20 16 4.1646 -5.5133 2.8142 21 8 5.5848 -5.5443 2.7773 22 8 3.3952 -6.6395 3.2133 23 1 -0.4850 0.8401 -0.0004 24 1 0.9645 -2.5165 -2.0440 25 1 -0.1576 -3.4083 -1.2004 26 1 2.1649 -3.8554 -2.1291 27 1 3.7649 -5.7307 -2.1731 28 1 4.7136 -6.5637 -0.0527 29 1 2.3675 -2.4868 2.5343 30 1 1.4895 -3.9842 2.9103 31 1 4.3255 -3.2082 3.6284 32 1 3.1255 -4.1581 4.5710 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260535583.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:38 Heat of formation + Delta-G solvation = -60.324710 kcal Electronic energy + Delta-G solvation = -18372.165403 eV Core-core repulsion = 15423.932530 eV Total energy + Delta-G solvation = -2948.232873 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.75396 -38.17545 -37.03818 -36.50249 -35.67619 -33.71484 -30.91980 -30.56454 -28.03948 -25.48057 -24.91103 -22.60597 -21.95626 -19.78896 -18.52472 -18.09970 -17.59046 -17.13790 -16.61582 -16.55342 -16.23230 -15.70261 -15.44539 -15.01202 -14.35647 -14.29837 -14.02136 -13.71978 -13.44612 -13.25199 -13.14147 -13.10998 -12.83800 -12.71975 -12.58101 -12.35315 -11.76837 -11.69731 -11.33481 -11.22841 -10.56063 -10.13906 -9.48801 -8.93770 -7.99122 -6.20589 -0.87770 -0.05081 0.37732 1.43371 1.45874 1.51625 1.68302 2.42577 2.53510 2.65960 3.21718 3.24688 3.45214 3.62762 3.86766 4.08291 4.11862 4.27511 4.46219 4.47292 4.63002 4.68990 4.80725 4.94948 5.05810 5.20207 5.27218 5.35852 5.67383 5.75746 5.95610 6.16138 6.63884 7.08022 7.23449 7.52217 9.03426 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.023855 B = 0.006785 C = 0.006028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.468956 B = 4125.791126 C = 4643.758502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.042 3.958 3 Si 0.940 3.060 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.539 4.539 8 H 0.045 0.955 9 C 0.258 3.742 10 H 0.027 0.973 11 N -0.823 5.823 12 C -0.101 4.101 13 C -0.093 4.093 14 C -0.132 4.132 15 C -0.037 4.037 16 C -0.648 4.648 17 C -0.048 4.048 18 C -0.101 4.101 19 C -0.535 4.535 20 S 2.484 3.516 21 O -0.968 6.968 22 O -0.963 6.963 23 H 0.256 0.744 24 H 0.324 0.676 25 H 0.313 0.687 26 H 0.132 0.868 27 H 0.161 0.839 28 H 0.147 0.853 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.165 0.835 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.191 -8.533 3.986 11.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.577 4.577 8 H 0.063 0.937 9 C 0.148 3.852 10 H 0.044 0.956 11 N -0.351 5.351 12 C -0.104 4.104 13 C -0.111 4.111 14 C -0.151 4.151 15 C -0.056 4.056 16 C -0.734 4.734 17 C -0.051 4.051 18 C -0.138 4.138 19 C -0.668 4.668 20 S 2.668 3.332 21 O -0.965 6.965 22 O -0.960 6.960 23 H 0.065 0.935 24 H 0.138 0.862 25 H 0.124 0.876 26 H 0.150 0.850 27 H 0.179 0.821 28 H 0.165 0.835 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.183 0.817 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.136 -8.549 4.597 11.483 hybrid contribution 0.236 0.909 -1.062 1.417 sum 6.372 -7.641 3.535 10.558 Atomic orbital electron populations 1.70198 1.06874 1.26456 1.47553 1.25572 0.95279 1.01353 0.94016 0.85934 0.78578 0.80218 0.78658 1.20454 1.21296 1.19458 1.20980 0.91884 0.90643 1.54222 0.93695 1.17933 0.87660 0.89160 0.90460 0.95571 1.58979 1.28513 1.43259 1.04383 1.21490 0.99179 0.97253 0.92510 1.21246 0.96764 0.95368 0.97753 1.21593 0.97210 0.97068 0.99191 1.20505 0.96882 0.97840 0.90393 1.30581 1.12924 1.08699 1.21189 1.20567 0.94739 0.93643 0.96113 1.20793 0.99467 1.05918 0.87671 1.30243 1.09270 1.17714 1.09595 1.06066 0.73828 0.77859 0.75463 1.93532 1.29246 1.87742 1.85990 1.93568 1.72224 1.48490 1.81743 0.93507 0.86216 0.87579 0.85009 0.82111 0.83535 0.87393 0.86888 0.81702 0.79701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.45 12.76 21.45 0.27 -48.18 16 2 C 0.04 2.21 5.39 84.66 0.46 2.66 16 3 Si 0.94 41.55 29.54 68.60 2.03 43.57 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.54 -27.40 8.57 25.60 0.22 -27.18 16 8 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 9 C 0.26 11.78 2.39 43.42 0.10 11.89 16 10 H 0.03 1.32 7.60 -2.38 -0.02 1.30 16 11 N -0.82 -36.02 8.10 -174.95 -1.42 -37.43 16 12 C -0.10 -3.94 5.01 -19.63 -0.10 -4.03 16 13 C -0.09 -3.16 9.21 22.12 0.20 -2.96 16 14 C -0.13 -3.80 10.10 22.27 0.22 -3.57 16 15 C -0.04 -1.11 10.02 22.20 0.22 -0.89 16 16 C -0.65 -20.60 6.16 22.21 0.14 -20.46 16 17 C -0.05 -1.68 5.93 -19.41 -0.12 -1.80 16 18 C -0.10 -2.87 5.40 30.34 0.16 -2.71 16 19 C -0.53 -10.50 7.66 72.41 0.55 -9.94 16 20 S 2.48 66.02 6.15 -56.49 -0.35 65.67 16 21 O -0.97 -30.43 18.01 -127.82 -2.30 -32.74 16 22 O -0.96 -30.32 18.01 -127.82 -2.30 -32.63 16 23 H 0.26 13.68 8.31 -92.70 -0.77 12.91 16 24 H 0.32 13.35 7.15 -89.69 -0.64 12.71 16 25 H 0.31 12.18 9.06 -89.69 -0.81 11.37 16 26 H 0.13 4.17 6.19 -2.91 -0.02 4.16 16 27 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 28 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 29 H 0.11 3.49 7.76 -2.39 -0.02 3.48 16 30 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.17 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.19 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -70.02 284.09 -2.28 -72.30 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: -0.29 Total: 28.42 kcal Atomic # 6 Polarization: -61.07 SS G_CDS: 2.07 Total: -59.00 kcal Atomic # 7 Polarization: -84.47 SS G_CDS: -1.14 Total: -85.61 kcal Atomic # 8 Polarization: -60.76 SS G_CDS: -4.60 Total: -65.36 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 66.02 SS G_CDS: -0.35 Total: 65.67 kcal Total: -70.02 -2.28 -72.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260535583.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.979 kcal (2) G-P(sol) polarization free energy of solvation -70.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds