Wall clock time and date at job start Mon Mar 30 2020 04:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00039 * 2 1 4 4 H 1.48500 * 109.47249 * 269.99940 * 3 2 1 5 5 H 1.48502 * 109.47470 * 29.99739 * 3 2 1 6 6 H 1.48505 * 109.47312 * 150.00188 * 3 2 1 7 7 C 1.37880 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99577 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99879 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47334 * 60.00313 * 9 7 2 11 11 N 1.46900 * 109.47499 * 299.99650 * 9 7 2 12 12 C 1.50700 * 109.46744 * 180.02562 * 9 7 2 13 13 C 1.38257 * 119.88755 * 99.85004 * 12 9 7 14 14 C 1.38208 * 119.13438 * 179.66454 * 13 12 9 15 15 C 1.37632 * 120.45038 * 0.37535 * 14 13 12 16 16 C 1.39791 * 121.05612 * 0.02562 * 15 14 13 17 17 C 1.37924 * 119.89154 * 279.99750 * 12 9 7 18 18 S 1.77619 * 130.67093 * 359.76188 * 17 12 9 19 19 O 1.42098 * 105.49613 * 309.99445 * 18 17 12 20 20 O 1.42094 * 105.49570 * 80.44856 * 18 17 12 21 21 C 1.83521 * 97.19501 * 195.22391 * 18 17 12 22 22 C 1.50911 * 126.56281 * 179.56029 * 16 15 14 23 23 H 0.97003 * 119.99745 * 0.02562 * 1 2 3 24 24 H 1.00895 * 111.00259 * 300.00924 * 11 9 7 25 25 H 1.00904 * 110.99689 * 63.95670 * 11 9 7 26 26 H 1.07994 * 120.42966 * 359.91611 * 13 12 9 27 27 H 1.08001 * 119.77553 * 180.35084 * 14 13 12 28 28 H 1.07998 * 119.47597 * 180.02562 * 15 14 13 29 29 H 1.08998 * 111.19895 * 93.65149 * 21 18 17 30 30 H 1.09004 * 111.19573 * 217.95818 * 21 18 17 31 31 H 1.08998 * 109.20244 * 39.75834 * 22 16 15 32 32 H 1.08997 * 109.12109 * 280.47378 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4069 -2.5773 1.1992 12 6 2.2303 -3.6445 -0.0005 13 6 2.5221 -4.3014 1.1805 14 6 3.4172 -5.3543 1.1614 15 6 4.0164 -5.7392 -0.0164 16 6 3.7375 -5.0791 -1.2167 17 6 2.8347 -4.0321 -1.1781 18 16 2.6675 -3.3975 -2.8286 19 8 1.2689 -3.3400 -3.0734 20 8 3.4900 -2.2397 -2.8754 21 6 3.4462 -4.8130 -3.6992 22 6 4.3268 -5.3889 -2.5710 23 1 -0.4850 0.8401 -0.0004 24 1 0.9652 -2.5260 2.0381 25 1 -0.3004 -1.8577 1.1911 26 1 2.0536 -3.9984 2.1051 27 1 3.6484 -5.8784 2.0770 28 1 4.7131 -6.5643 -0.0133 29 1 2.6980 -5.5361 -4.0236 30 1 4.0528 -4.4737 -4.5389 31 1 4.4006 -6.4698 -2.6910 32 1 5.3235 -4.9525 -2.6351 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260572665.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:47 Heat of formation + Delta-G solvation = -66.685543 kcal Electronic energy + Delta-G solvation = -18770.234142 eV Core-core repulsion = 15821.725442 eV Total energy + Delta-G solvation = -2948.508700 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.54614 -38.04928 -37.23515 -36.66394 -35.30422 -33.50768 -31.41577 -30.23684 -28.05871 -25.44154 -24.98750 -23.06712 -21.24673 -19.85125 -18.70284 -18.29373 -17.58932 -17.01930 -16.78576 -16.32582 -16.15861 -15.48320 -15.20591 -14.88829 -14.75938 -14.24895 -13.77907 -13.66592 -13.40595 -13.15357 -13.06583 -12.97000 -12.94539 -12.79561 -12.42259 -12.30745 -11.98409 -11.83419 -11.53591 -11.00453 -10.74912 -10.08404 -9.48448 -9.28106 -8.20970 -6.46359 -0.78481 0.06824 0.49143 1.27900 1.32668 1.41411 1.88244 2.30498 2.69933 2.87806 2.97115 3.28025 3.49632 3.58046 3.96881 4.16773 4.20434 4.39269 4.47861 4.58895 4.72353 4.75067 4.80124 4.96929 5.04711 5.23777 5.34583 5.52439 5.58646 5.79152 5.90909 6.11161 6.55074 6.79468 7.03307 7.29602 8.75325 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.020349 B = 0.009154 C = 0.007516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.652555 B = 3057.981540 C = 3724.534713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.020 3.980 3 Si 0.953 3.047 4 H -0.281 1.281 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.560 4.560 8 H 0.045 0.955 9 C 0.216 3.784 10 H 0.022 0.978 11 N -0.837 5.837 12 C 0.045 3.955 13 C -0.151 4.151 14 C -0.070 4.070 15 C -0.135 4.135 16 C -0.048 4.048 17 C -0.661 4.661 18 S 2.423 3.577 19 O -0.989 6.989 20 O -0.975 6.975 21 C -0.528 4.528 22 C -0.086 4.086 23 H 0.270 0.730 24 H 0.321 0.679 25 H 0.347 0.653 26 H 0.131 0.869 27 H 0.164 0.836 28 H 0.171 0.829 29 H 0.175 0.825 30 H 0.186 0.814 31 H 0.152 0.848 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.085 -15.051 -3.878 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.180 4.180 3 Si 0.778 3.222 4 H -0.207 1.207 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.599 4.599 8 H 0.063 0.937 9 C 0.105 3.895 10 H 0.040 0.960 11 N -0.367 5.367 12 C 0.043 3.957 13 C -0.170 4.170 14 C -0.087 4.087 15 C -0.153 4.153 16 C -0.050 4.050 17 C -0.749 4.749 18 S 2.611 3.389 19 O -0.986 6.986 20 O -0.972 6.972 21 C -0.663 4.663 22 C -0.124 4.124 23 H 0.080 0.920 24 H 0.132 0.868 25 H 0.162 0.838 26 H 0.149 0.851 27 H 0.181 0.819 28 H 0.188 0.812 29 H 0.192 0.808 30 H 0.203 0.797 31 H 0.170 0.830 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.279 -14.761 -4.455 18.531 hybrid contribution 0.385 1.891 0.747 2.069 sum 10.664 -12.870 -3.708 17.120 Atomic orbital electron populations 1.69847 1.06844 1.28193 1.50263 1.25788 0.95900 1.02582 0.93779 0.85634 0.79045 0.79213 0.78324 1.20717 1.19184 1.19110 1.21899 0.93127 0.92139 1.52757 0.93715 1.18142 0.89901 0.89693 0.91727 0.96021 1.59515 1.17945 1.55381 1.03827 1.19521 0.91676 0.92218 0.92244 1.21338 1.00181 0.97902 0.97595 1.21567 0.93048 0.94361 0.99753 1.21254 1.02078 1.01632 0.90368 1.21040 0.93278 0.92610 0.98092 1.29973 1.12297 1.12799 1.19869 1.07587 0.74970 0.78674 0.77655 1.93499 1.32148 1.87882 1.85039 1.93535 1.69909 1.47361 1.86391 1.30271 1.12444 1.14814 1.08820 1.20912 0.99524 1.07596 0.84345 0.92042 0.86784 0.83789 0.85071 0.81878 0.81184 0.80755 0.79678 0.82965 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.26 11.54 21.45 0.25 -55.02 16 2 C 0.02 1.20 5.38 84.66 0.46 1.66 16 3 Si 0.95 47.45 29.54 68.60 2.03 49.47 16 4 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 5 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 7 C -0.56 -33.84 8.70 25.60 0.22 -33.62 16 8 H 0.04 2.77 7.74 -2.91 -0.02 2.75 16 9 C 0.22 12.21 2.72 43.42 0.12 12.33 16 10 H 0.02 1.43 6.79 -2.39 -0.02 1.41 16 11 N -0.84 -43.50 8.67 -174.96 -1.52 -45.01 16 12 C 0.04 2.12 5.02 -19.93 -0.10 2.02 16 13 C -0.15 -5.82 9.28 22.27 0.21 -5.61 16 14 C -0.07 -1.93 9.99 22.12 0.22 -1.71 16 15 C -0.13 -3.22 9.97 22.50 0.22 -3.00 16 16 C -0.05 -1.35 5.97 -19.41 -0.12 -1.47 16 17 C -0.66 -26.98 5.96 22.21 0.13 -26.85 16 18 S 2.42 95.23 5.84 -56.49 -0.33 94.90 16 19 O -0.99 -48.39 16.75 -127.82 -2.14 -50.53 16 20 O -0.97 -46.28 18.01 -127.82 -2.30 -48.58 16 21 C -0.53 -9.41 7.66 72.41 0.55 -8.86 16 22 C -0.09 -1.39 6.25 30.35 0.19 -1.20 16 23 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 24 H 0.32 15.25 7.28 -89.70 -0.65 14.60 16 25 H 0.35 19.32 7.08 -89.69 -0.63 18.68 16 26 H 0.13 4.90 6.27 -2.91 -0.02 4.88 16 27 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 28 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 29 H 0.17 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.19 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -87.53 280.72 -2.03 -89.56 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: -0.12 Total: 31.52 kcal Atomic # 6 Polarization: -68.42 SS G_CDS: 2.11 Total: -66.31 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -1.27 Total: -100.03 kcal Atomic # 8 Polarization: -94.67 SS G_CDS: -4.44 Total: -99.12 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.47 kcal Atomic # 16 Polarization: 95.23 SS G_CDS: -0.33 Total: 94.90 kcal Total: -87.53 -2.03 -89.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260572665.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.870 kcal (2) G-P(sol) polarization free energy of solvation -87.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds