Wall clock time and date at job start Mon Mar 30 2020 04:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00030 * 2 1 4 4 H 1.48501 * 109.47229 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46955 * 300.00153 * 3 2 1 6 6 H 1.48494 * 109.47398 * 59.99670 * 3 2 1 7 7 C 1.37877 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00117 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99851 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47087 * 300.00203 * 9 7 2 11 11 N 1.46905 * 109.47121 * 60.00006 * 9 7 2 12 12 C 1.50698 * 109.47079 * 179.97438 * 9 7 2 13 13 C 1.38251 * 119.89259 * 264.99806 * 12 9 7 14 14 C 1.38213 * 119.13947 * 179.97438 * 13 12 9 15 15 C 1.37643 * 120.44632 * 359.73606 * 14 13 12 16 16 C 1.39777 * 121.05145 * 0.11121 * 15 14 13 17 17 C 1.37927 * 119.88439 * 84.72422 * 12 9 7 18 18 S 1.77623 * 130.66365 * 1.54673 * 17 12 9 19 19 O 1.42102 * 105.62775 * 49.86120 * 18 17 12 20 20 O 1.42094 * 105.52611 * 279.48580 * 18 17 12 21 21 C 1.83522 * 97.26263 * 164.68553 * 18 17 12 22 22 C 1.50918 * 126.58538 * 180.63581 * 16 15 14 23 23 H 0.97003 * 119.99846 * 0.02562 * 1 2 3 24 24 H 1.00901 * 110.99869 * 60.00289 * 11 9 7 25 25 H 1.00896 * 110.99543 * 183.95412 * 11 9 7 26 26 H 1.07995 * 120.42675 * 359.90986 * 13 12 9 27 27 H 1.08000 * 119.77520 * 179.74951 * 14 13 12 28 28 H 1.07989 * 119.47181 * 180.09814 * 15 14 13 29 29 H 1.09009 * 111.20159 * 266.11665 * 21 18 17 30 30 H 1.08997 * 111.19895 * 141.76441 * 21 18 17 31 31 H 1.08999 * 109.21750 * 320.81926 * 22 16 15 32 32 H 1.09001 * 109.21326 * 80.09095 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8920 11 7 0.4060 -2.5778 -1.1974 12 6 2.2304 -3.6445 0.0015 13 6 2.5978 -4.2367 -1.1926 14 6 3.4975 -5.2857 -1.1748 15 6 4.0253 -5.7317 0.0156 16 6 3.6657 -5.1408 1.2302 17 6 2.7615 -4.0949 1.1920 18 16 2.4682 -3.5683 2.8629 19 8 1.0555 -3.5466 3.0150 20 8 3.2611 -2.4024 3.0390 21 6 3.2134 -5.0224 3.6986 22 6 4.1745 -5.5186 2.5999 23 1 -0.4850 0.8401 -0.0004 24 1 0.9637 -2.5270 -2.0367 25 1 -0.1578 -3.4144 -1.1880 26 1 2.1863 -3.8847 -2.1270 27 1 3.7886 -5.7584 -2.1012 28 1 4.7283 -6.5515 0.0111 29 1 2.4586 -5.7745 3.9287 30 1 3.7573 -4.7257 4.5953 31 1 4.2638 -6.6031 2.6629 32 1 5.1557 -5.0698 2.7544 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260572670.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:49 Heat of formation + Delta-G solvation = -29.962395 kcal Electronic energy + Delta-G solvation = -18738.530942 eV Core-core repulsion = 15791.614678 eV Total energy + Delta-G solvation = -2946.916265 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.35095 -36.57725 -35.69150 -35.15529 -33.78550 -31.60697 -30.06456 -28.93677 -26.03998 -24.38025 -23.22878 -21.81381 -19.78084 -18.47382 -16.89255 -16.45483 -16.28726 -15.74049 -15.19493 -14.67297 -14.52973 -14.27133 -13.93912 -13.57525 -13.04212 -12.97247 -12.76417 -12.24678 -12.06793 -11.70868 -11.56494 -11.44763 -11.14529 -11.08143 -10.74723 -10.55511 -10.33016 -10.08128 -9.64621 -9.28858 -8.82745 -8.39224 -8.10597 -7.15784 -5.82811 -3.99325 0.46742 1.26024 1.70462 3.18608 3.40700 3.47917 3.54109 3.87890 4.01938 4.30691 4.48561 4.55102 4.57280 5.10050 5.26248 5.29742 5.34599 5.41302 5.48861 5.55471 5.61847 5.86687 6.13107 6.22609 6.31342 6.47086 6.68572 6.77386 7.28046 7.45615 7.95954 8.14202 8.59184 8.97205 9.14971 9.70262 11.21478 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.008971 C = 0.007467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.816690 B = 3120.459394 C = 3748.694995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.086 3.914 3 Si 0.887 3.113 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.059 0.941 9 C 0.228 3.772 10 H 0.070 0.930 11 N -0.806 5.806 12 C 0.050 3.950 13 C -0.147 4.147 14 C -0.072 4.072 15 C -0.147 4.147 16 C -0.051 4.051 17 C -0.622 4.622 18 S 2.471 3.529 19 O -0.924 6.924 20 O -0.912 6.912 21 C -0.595 4.595 22 C -0.083 4.083 23 H 0.257 0.743 24 H 0.319 0.681 25 H 0.301 0.699 26 H 0.130 0.870 27 H 0.122 0.878 28 H 0.117 0.883 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.098 0.902 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.631 -13.660 3.539 16.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.122 4.122 3 Si 0.714 3.286 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.208 1.208 7 C -0.573 4.573 8 H 0.077 0.923 9 C 0.117 3.883 10 H 0.088 0.912 11 N -0.332 5.332 12 C 0.047 3.953 13 C -0.166 4.166 14 C -0.090 4.090 15 C -0.166 4.166 16 C -0.053 4.053 17 C -0.711 4.711 18 S 2.650 3.350 19 O -0.921 6.921 20 O -0.909 6.909 21 C -0.723 4.723 22 C -0.121 4.121 23 H 0.067 0.933 24 H 0.132 0.868 25 H 0.112 0.888 26 H 0.148 0.852 27 H 0.140 0.860 28 H 0.135 0.865 29 H 0.158 0.842 30 H 0.160 0.840 31 H 0.116 0.884 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.676 -12.049 4.157 14.388 hybrid contribution 1.595 -0.865 -0.781 1.975 sum 8.270 -12.914 3.376 15.703 Atomic orbital electron populations 1.70127 1.05680 1.25802 1.45970 1.24928 0.94692 0.98700 0.93843 0.86638 0.80523 0.83979 0.77482 1.19591 1.21053 1.20789 1.20778 0.92426 0.88753 1.55369 0.92288 1.18735 0.88101 0.88886 0.92538 0.91249 1.59103 1.27822 1.42296 1.04028 1.21123 0.92019 0.92510 0.89683 1.21232 0.99639 0.97292 0.98481 1.21054 0.95059 0.95575 0.97348 1.20631 1.02801 1.01803 0.91338 1.20451 0.95194 0.94631 0.95013 1.30039 1.11008 1.09498 1.20524 1.06617 0.75621 0.76252 0.76521 1.93592 1.27193 1.86189 1.85159 1.93632 1.71132 1.41349 1.84814 1.30479 1.11704 1.21614 1.08544 1.20576 0.99203 1.04405 0.87894 0.93337 0.86815 0.88800 0.85231 0.86022 0.86481 0.84186 0.84043 0.88355 0.88125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.41 12.77 55.43 0.71 -24.70 16 2 C 0.09 2.52 5.39 -17.82 -0.10 2.42 16 3 Si 0.89 22.52 29.54 -169.99 -5.02 17.50 16 4 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.53 -15.37 8.71 -34.44 -0.30 -15.67 16 8 H 0.06 1.72 7.74 -52.48 -0.41 1.32 16 9 C 0.23 5.88 2.67 -70.01 -0.19 5.69 16 10 H 0.07 2.01 6.61 -51.93 -0.34 1.67 16 11 N -0.81 -19.18 8.13 -6.65 -0.05 -19.23 16 12 C 0.05 1.09 4.97 -104.73 -0.52 0.57 16 13 C -0.15 -2.68 9.30 -39.59 -0.37 -3.04 16 14 C -0.07 -1.08 9.99 -39.81 -0.40 -1.47 16 15 C -0.15 -2.07 9.97 -39.22 -0.39 -2.47 16 16 C -0.05 -0.79 5.96 -103.92 -0.62 -1.41 16 17 C -0.62 -12.20 5.98 -39.67 -0.24 -12.43 16 18 S 2.47 45.88 5.80 -107.50 -0.62 45.26 16 19 O -0.92 -20.23 16.70 -57.39 -0.96 -21.19 16 20 O -0.91 -20.19 18.01 -57.39 -1.03 -21.22 16 21 C -0.60 -6.58 7.66 37.77 0.29 -6.29 16 22 C -0.08 -0.92 6.25 -27.16 -0.17 -1.09 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.32 6.98 7.20 -39.29 -0.28 6.69 16 25 H 0.30 6.36 9.06 -39.29 -0.36 6.01 16 26 H 0.13 2.18 6.31 -52.49 -0.33 1.85 16 27 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 28 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.14 1.24 8.14 -51.92 -0.42 0.82 16 30 H 0.14 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 283.03 15.07 4.27 4.27 Total: -1.00 -36.43 283.03 -9.11 -45.53 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -3.39 Total: 8.99 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: -3.00 Total: -35.19 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.65 Total: -43.93 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -1.99 Total: -42.41 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 16 Polarization: 45.88 SS G_CDS: -0.62 Total: 45.26 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -36.43 -9.11 -45.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260572670.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.569 kcal (2) G-P(sol) polarization free energy of solvation -36.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds