Wall clock time and date at job start Mon Mar 30 2020 04:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00030 * 2 1 4 4 H 1.48501 * 109.47229 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46955 * 300.00153 * 3 2 1 6 6 H 1.48494 * 109.47398 * 59.99670 * 3 2 1 7 7 C 1.37877 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00117 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99851 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47087 * 300.00203 * 9 7 2 11 11 N 1.46905 * 109.47121 * 60.00006 * 9 7 2 12 12 C 1.50698 * 109.47079 * 179.97438 * 9 7 2 13 13 C 1.38251 * 119.89259 * 264.99806 * 12 9 7 14 14 C 1.38213 * 119.13947 * 179.97438 * 13 12 9 15 15 C 1.37643 * 120.44632 * 359.73606 * 14 13 12 16 16 C 1.39777 * 121.05145 * 0.11121 * 15 14 13 17 17 C 1.37927 * 119.88439 * 84.72422 * 12 9 7 18 18 S 1.77623 * 130.66365 * 1.54673 * 17 12 9 19 19 O 1.42102 * 105.62775 * 49.86120 * 18 17 12 20 20 O 1.42094 * 105.52611 * 279.48580 * 18 17 12 21 21 C 1.83522 * 97.26263 * 164.68553 * 18 17 12 22 22 C 1.50918 * 126.58538 * 180.63581 * 16 15 14 23 23 H 0.97003 * 119.99846 * 0.02562 * 1 2 3 24 24 H 1.00901 * 110.99869 * 60.00289 * 11 9 7 25 25 H 1.00896 * 110.99543 * 183.95412 * 11 9 7 26 26 H 1.07995 * 120.42675 * 359.90986 * 13 12 9 27 27 H 1.08000 * 119.77520 * 179.74951 * 14 13 12 28 28 H 1.07989 * 119.47181 * 180.09814 * 15 14 13 29 29 H 1.09009 * 111.20159 * 266.11665 * 21 18 17 30 30 H 1.08997 * 111.19895 * 141.76441 * 21 18 17 31 31 H 1.08999 * 109.21750 * 320.81926 * 22 16 15 32 32 H 1.09001 * 109.21326 * 80.09095 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8920 11 7 0.4060 -2.5778 -1.1974 12 6 2.2304 -3.6445 0.0015 13 6 2.5978 -4.2367 -1.1926 14 6 3.4975 -5.2857 -1.1748 15 6 4.0253 -5.7317 0.0156 16 6 3.6657 -5.1408 1.2302 17 6 2.7615 -4.0949 1.1920 18 16 2.4682 -3.5683 2.8629 19 8 1.0555 -3.5466 3.0150 20 8 3.2611 -2.4024 3.0390 21 6 3.2134 -5.0224 3.6986 22 6 4.1745 -5.5186 2.5999 23 1 -0.4850 0.8401 -0.0004 24 1 0.9637 -2.5270 -2.0367 25 1 -0.1578 -3.4144 -1.1880 26 1 2.1863 -3.8847 -2.1270 27 1 3.7886 -5.7584 -2.1012 28 1 4.7283 -6.5515 0.0111 29 1 2.4586 -5.7745 3.9287 30 1 3.7573 -4.7257 4.5953 31 1 4.2638 -6.6031 2.6629 32 1 5.1557 -5.0698 2.7544 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260572670.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:49 Heat of formation + Delta-G solvation = -60.687477 kcal Electronic energy + Delta-G solvation = -18739.863282 eV Core-core repulsion = 15791.614678 eV Total energy + Delta-G solvation = -2948.248604 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.63249 -38.06360 -37.21057 -36.66101 -35.20783 -33.62902 -31.44586 -30.23103 -28.11309 -25.45220 -24.91454 -23.12894 -21.30757 -19.85896 -18.60893 -18.21900 -17.57435 -17.04060 -16.72215 -16.34668 -16.21786 -15.71118 -15.36397 -14.94970 -14.47498 -14.39084 -14.03320 -13.75803 -13.44659 -13.13202 -13.06296 -12.97474 -12.89884 -12.71030 -12.43322 -12.27176 -11.94060 -11.58003 -11.34708 -11.08552 -10.62490 -10.11469 -9.52080 -9.00922 -8.05167 -6.27808 -0.80983 0.00406 0.40797 1.33821 1.36861 1.48540 1.86290 2.39792 2.63049 2.85417 3.17172 3.25614 3.46484 3.55670 3.94961 4.10923 4.15403 4.27397 4.41578 4.53315 4.60161 4.70489 4.76316 4.96281 5.01681 5.18784 5.22065 5.42970 5.63039 5.68907 6.00247 6.08382 6.55629 7.02029 7.16753 7.44387 8.98796 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.008971 C = 0.007467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.816690 B = 3120.459394 C = 3748.694995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.031 3.969 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.268 1.268 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.042 0.958 9 C 0.232 3.768 10 H 0.021 0.979 11 N -0.817 5.817 12 C 0.006 3.994 13 C -0.165 4.165 14 C -0.065 4.065 15 C -0.135 4.135 16 C -0.045 4.045 17 C -0.657 4.657 18 S 2.422 3.578 19 O -0.987 6.987 20 O -0.975 6.975 21 C -0.528 4.528 22 C -0.088 4.088 23 H 0.258 0.742 24 H 0.328 0.672 25 H 0.314 0.686 26 H 0.129 0.871 27 H 0.164 0.836 28 H 0.171 0.829 29 H 0.176 0.824 30 H 0.186 0.814 31 H 0.153 0.847 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.938 -17.359 3.951 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.173 4.173 3 Si 0.770 3.230 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.060 0.940 9 C 0.121 3.879 10 H 0.038 0.962 11 N -0.345 5.345 12 C 0.003 3.997 13 C -0.184 4.184 14 C -0.083 4.083 15 C -0.154 4.154 16 C -0.047 4.047 17 C -0.746 4.746 18 S 2.611 3.389 19 O -0.984 6.984 20 O -0.973 6.973 21 C -0.663 4.663 22 C -0.125 4.125 23 H 0.067 0.933 24 H 0.142 0.858 25 H 0.125 0.875 26 H 0.147 0.853 27 H 0.181 0.819 28 H 0.188 0.812 29 H 0.193 0.807 30 H 0.203 0.797 31 H 0.171 0.829 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.955 -15.686 4.537 19.124 hybrid contribution 0.669 0.051 -0.851 1.084 sum 10.624 -15.635 3.686 19.259 Atomic orbital electron populations 1.70246 1.06965 1.26519 1.47508 1.25735 0.95608 1.02089 0.93820 0.85734 0.79131 0.80176 0.78004 1.19550 1.19328 1.20575 1.21011 0.91788 0.90849 1.54489 0.93964 1.18222 0.88499 0.90062 0.91077 0.96158 1.58861 1.28349 1.43344 1.03925 1.20696 0.93565 0.93093 0.92383 1.21337 1.01162 0.98816 0.97125 1.21543 0.93062 0.93796 0.99882 1.21268 1.02065 1.01946 0.90081 1.21095 0.93076 0.92453 0.98099 1.30049 1.13024 1.11642 1.19886 1.07624 0.74872 0.78939 0.77512 1.93504 1.30978 1.88056 1.85903 1.93541 1.71228 1.46890 1.85598 1.30257 1.11740 1.15136 1.09137 1.20912 0.99338 1.07811 0.84471 0.93317 0.85841 0.87456 0.85278 0.81864 0.81189 0.80662 0.79670 0.82908 0.85639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -56.10 12.77 21.45 0.27 -55.83 16 2 C 0.03 1.94 5.39 84.65 0.46 2.39 16 3 Si 0.94 48.37 29.54 68.60 2.03 50.39 16 4 H -0.27 -13.67 7.11 99.48 0.71 -12.97 16 5 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 7 C -0.54 -33.36 8.71 25.60 0.22 -33.13 16 8 H 0.04 2.64 7.74 -2.91 -0.02 2.62 16 9 C 0.23 12.93 2.67 43.42 0.12 13.05 16 10 H 0.02 1.32 6.61 -2.39 -0.02 1.31 16 11 N -0.82 -41.55 8.13 -174.94 -1.42 -42.97 16 12 C 0.01 0.27 4.97 -19.94 -0.10 0.17 16 13 C -0.17 -6.00 9.30 22.27 0.21 -5.80 16 14 C -0.07 -1.70 9.99 22.12 0.22 -1.48 16 15 C -0.14 -3.07 9.97 22.50 0.22 -2.85 16 16 C -0.05 -1.22 5.96 -19.41 -0.12 -1.33 16 17 C -0.66 -25.99 5.98 22.21 0.13 -25.86 16 18 S 2.42 92.99 5.80 -56.49 -0.33 92.66 16 19 O -0.99 -47.08 16.70 -127.80 -2.13 -49.22 16 20 O -0.98 -46.03 18.01 -127.80 -2.30 -48.33 16 21 C -0.53 -8.93 7.66 72.38 0.55 -8.38 16 22 C -0.09 -1.35 6.25 30.32 0.19 -1.16 16 23 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 24 H 0.33 15.24 7.20 -89.69 -0.65 14.60 16 25 H 0.31 14.25 9.06 -89.70 -0.81 13.44 16 26 H 0.13 4.46 6.31 -2.91 -0.02 4.44 16 27 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 28 H 0.17 2.13 8.06 -2.92 -0.02 2.11 16 29 H 0.18 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.19 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -91.93 283.03 -2.07 -93.99 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: -0.29 Total: 23.67 kcal Atomic # 6 Polarization: -66.48 SS G_CDS: 2.11 Total: -64.37 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -1.15 Total: -98.80 kcal Atomic # 8 Polarization: -93.11 SS G_CDS: -4.44 Total: -97.54 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.03 Total: 50.39 kcal Atomic # 16 Polarization: 92.99 SS G_CDS: -0.33 Total: 92.66 kcal Total: -91.93 -2.07 -93.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260572670.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.306 kcal (2) G-P(sol) polarization free energy of solvation -91.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds