Wall clock time and date at job start Mon Mar 30 2020 04:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.46863 * 60.00053 * 9 7 2 11 11 N 1.46904 * 109.46966 * 299.99969 * 9 7 2 12 12 C 1.50700 * 109.47064 * 179.97438 * 9 7 2 13 13 C 1.38248 * 119.77594 * 79.72904 * 12 9 7 14 14 C 1.38213 * 119.13824 * 179.97438 * 13 12 9 15 15 C 1.37974 * 120.22178 * 0.48982 * 14 13 12 16 16 C 1.38264 * 121.49773 * 359.46241 * 15 14 13 17 17 C 1.37591 * 119.77289 * 259.99912 * 12 9 7 18 18 C 1.50910 * 115.78572 * 180.95758 * 16 15 14 19 19 C 1.54271 * 110.85376 * 339.46823 * 18 16 15 20 20 S 1.77605 * 130.66150 * 179.31250 * 15 14 13 21 21 O 1.42100 * 105.49988 * 309.53356 * 20 15 14 22 22 O 1.42101 * 105.49309 * 79.98703 * 20 15 14 23 23 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 24 24 H 1.00898 * 111.00006 * 176.04322 * 11 9 7 25 25 H 1.00898 * 110.99899 * 299.99947 * 11 9 7 26 26 H 1.08002 * 120.43359 * 0.13682 * 13 12 9 27 27 H 1.08000 * 119.89202 * 180.24886 * 14 13 12 28 28 H 1.08002 * 119.47651 * 0.02562 * 17 12 9 29 29 H 1.09004 * 109.21367 * 99.83509 * 18 16 15 30 30 H 1.08997 * 109.21606 * 219.09688 * 18 16 15 31 31 H 1.09003 * 111.19616 * 269.81343 * 19 18 16 32 32 H 1.08993 * 111.24286 * 145.46310 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 1 3.8753 -0.6757 0.8924 11 7 4.0008 -0.5073 -1.1980 12 6 4.0140 -2.6147 0.0124 13 6 4.0407 -3.3396 -1.1644 14 6 4.5044 -4.6414 -1.1426 15 6 4.9247 -5.2092 0.0426 16 6 4.9064 -4.5004 1.2296 17 6 4.4377 -3.1834 1.1915 18 6 5.4152 -5.2390 2.4432 19 6 5.3726 -6.7642 2.2157 20 16 5.5463 -6.8362 0.3900 21 8 4.6077 -7.7328 -0.1883 22 8 6.9110 -6.8136 -0.0054 23 1 -0.4850 0.8400 0.0004 24 1 5.0073 -0.4371 -1.1903 25 1 3.6770 -0.9690 -2.0347 26 1 3.7059 -2.8937 -2.0894 27 1 4.5343 -5.2176 -2.0556 28 1 4.4056 -2.6043 2.1025 29 1 6.4426 -4.9349 2.6437 30 1 4.7942 -4.9872 3.3029 31 1 4.4198 -7.1843 2.5378 32 1 6.2070 -7.2608 2.7109 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260828557.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:44 Heat of formation + Delta-G solvation = -31.854780 kcal Electronic energy + Delta-G solvation = -17983.149154 eV Core-core repulsion = 15036.150829 eV Total energy + Delta-G solvation = -2946.998325 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.51944 -37.11769 -36.05247 -35.82274 -33.82986 -31.91816 -30.45628 -29.21209 -26.48859 -24.63039 -23.10604 -22.11724 -19.72817 -19.01950 -17.30950 -17.02308 -16.49863 -16.10771 -15.28291 -15.05678 -14.67164 -14.50649 -14.13750 -13.94589 -13.18680 -13.15103 -12.87134 -12.60211 -12.40044 -12.14056 -12.05610 -11.86449 -11.72393 -11.05707 -10.88144 -10.85118 -10.52958 -10.28089 -9.97219 -9.43667 -8.67483 -8.59172 -8.54404 -7.37946 -6.11189 -4.23675 0.04063 1.15598 1.54032 2.68612 3.42746 3.49881 3.54187 3.80380 3.84325 3.98892 4.21794 4.38139 4.60516 4.89177 4.92582 5.15977 5.18563 5.37764 5.40812 5.47327 5.55227 5.68872 5.79067 6.05879 6.11337 6.28006 6.53660 6.56759 7.01808 7.14542 7.43680 8.01801 8.19076 8.54494 8.87575 9.51276 10.98040 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.038573 B = 0.005041 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.720010 B = 5553.124746 C = 5618.275197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.088 3.912 3 Si 0.868 3.132 4 H -0.296 1.296 5 H -0.193 1.193 6 H -0.302 1.302 7 C -0.526 4.526 8 H 0.071 0.929 9 C 0.213 3.787 10 H 0.050 0.950 11 N -0.833 5.833 12 C -0.016 4.016 13 C -0.131 4.131 14 C -0.002 4.002 15 C -0.649 4.649 16 C -0.048 4.048 17 C -0.117 4.117 18 C -0.087 4.087 19 C -0.574 4.574 20 S 2.471 3.529 21 O -0.939 6.939 22 O -0.937 6.937 23 H 0.265 0.735 24 H 0.310 0.690 25 H 0.332 0.668 26 H 0.133 0.867 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.144 0.856 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.549 -10.569 4.016 16.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.117 4.117 3 Si 0.694 3.306 4 H -0.224 1.224 5 H -0.115 1.115 6 H -0.230 1.230 7 C -0.564 4.564 8 H 0.089 0.911 9 C 0.104 3.896 10 H 0.068 0.932 11 N -0.362 5.362 12 C -0.018 4.018 13 C -0.150 4.150 14 C -0.021 4.021 15 C -0.737 4.737 16 C -0.050 4.050 17 C -0.137 4.137 18 C -0.125 4.125 19 C -0.704 4.704 20 S 2.653 3.347 21 O -0.936 6.936 22 O -0.934 6.934 23 H 0.074 0.926 24 H 0.121 0.879 25 H 0.146 0.854 26 H 0.151 0.849 27 H 0.143 0.857 28 H 0.144 0.856 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.163 0.837 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 12.310 -10.535 3.642 16.607 hybrid contribution 0.135 0.715 0.457 0.859 sum 12.445 -9.820 4.099 16.374 Atomic orbital electron populations 1.69945 1.06979 1.27576 1.48614 1.24974 0.94522 1.00106 0.92141 0.87175 0.84564 0.80948 0.77872 1.22376 1.11456 1.22969 1.20650 0.86748 0.94743 1.54223 0.91114 1.18757 0.96780 0.83266 0.90824 0.93214 1.60064 1.12919 1.57603 1.05661 1.21402 0.88657 0.99669 0.92099 1.21193 1.00625 0.94019 0.99170 1.20141 0.92304 0.94503 0.95145 1.29959 1.20370 1.23520 0.99857 1.20386 0.96572 0.95584 0.92453 1.20862 1.00424 0.93587 0.98803 1.20645 1.04241 0.89505 0.98101 1.30299 1.12302 1.03179 1.24633 1.06350 0.74911 0.74912 0.78510 1.93588 1.62788 1.62852 1.74371 1.93611 1.33289 1.86502 1.79981 0.92576 0.87875 0.85387 0.84929 0.85737 0.85633 0.87947 0.87693 0.83747 0.83819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.96 55.43 0.77 -26.11 16 2 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 3 Si 0.87 20.75 26.93 -169.99 -4.58 16.17 16 4 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.19 -4.23 5.18 56.52 0.29 -3.93 16 6 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 7 C -0.53 -13.96 9.28 -34.44 -0.32 -14.27 16 8 H 0.07 2.10 7.98 -52.49 -0.42 1.68 16 9 C 0.21 4.52 2.34 -70.01 -0.16 4.35 16 10 H 0.05 1.07 7.39 -51.93 -0.38 0.68 16 11 N -0.83 -15.91 5.68 -6.64 -0.04 -15.95 16 12 C -0.02 -0.30 4.86 -104.85 -0.51 -0.81 16 13 C -0.13 -2.27 9.31 -39.59 -0.37 -2.64 16 14 C 0.00 -0.03 10.02 -39.69 -0.40 -0.43 16 15 C -0.65 -9.74 6.16 -39.67 -0.24 -9.98 16 16 C -0.05 -0.69 5.97 -103.91 -0.62 -1.31 16 17 C -0.12 -1.95 9.59 -39.22 -0.38 -2.32 16 18 C -0.09 -0.83 6.25 -27.12 -0.17 -1.00 16 19 C -0.57 -4.49 7.66 37.82 0.29 -4.20 16 20 S 2.47 30.35 6.15 -107.50 -0.66 29.69 16 21 O -0.94 -14.41 18.01 -57.36 -1.03 -15.44 16 22 O -0.94 -13.83 18.01 -57.36 -1.03 -14.87 16 23 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.31 5.07 9.06 -39.29 -0.36 4.71 16 25 H 0.33 6.08 7.34 -39.29 -0.29 5.79 16 26 H 0.13 2.16 6.68 -52.49 -0.35 1.81 16 27 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.13 1.90 8.00 -52.49 -0.42 1.48 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.14 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.14 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 280.45 15.07 4.23 4.23 Total: -1.00 -35.30 280.45 -8.90 -44.20 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -3.58 Total: 8.35 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: -2.98 Total: -30.26 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.74 Total: -42.06 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -2.07 Total: -30.31 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.58 Total: 16.17 kcal Atomic # 16 Polarization: 30.35 SS G_CDS: -0.66 Total: 29.69 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -35.30 -8.90 -44.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260828557.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.342 kcal (2) G-P(sol) polarization free energy of solvation -35.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds