Wall clock time and date at job start Mon Mar 30 2020 04:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.46863 * 60.00053 * 9 7 2 11 11 N 1.46904 * 109.46966 * 299.99969 * 9 7 2 12 12 C 1.50700 * 109.47064 * 179.97438 * 9 7 2 13 13 C 1.38248 * 119.77594 * 79.72904 * 12 9 7 14 14 C 1.38213 * 119.13824 * 179.97438 * 13 12 9 15 15 C 1.37974 * 120.22178 * 0.48982 * 14 13 12 16 16 C 1.38264 * 121.49773 * 359.46241 * 15 14 13 17 17 C 1.37591 * 119.77289 * 259.99912 * 12 9 7 18 18 C 1.50910 * 115.78572 * 180.95758 * 16 15 14 19 19 C 1.54271 * 110.85376 * 339.46823 * 18 16 15 20 20 S 1.77605 * 130.66150 * 179.31250 * 15 14 13 21 21 O 1.42100 * 105.49988 * 309.53356 * 20 15 14 22 22 O 1.42101 * 105.49309 * 79.98703 * 20 15 14 23 23 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 24 24 H 1.00898 * 111.00006 * 176.04322 * 11 9 7 25 25 H 1.00898 * 110.99899 * 299.99947 * 11 9 7 26 26 H 1.08002 * 120.43359 * 0.13682 * 13 12 9 27 27 H 1.08000 * 119.89202 * 180.24886 * 14 13 12 28 28 H 1.08002 * 119.47651 * 0.02562 * 17 12 9 29 29 H 1.09004 * 109.21367 * 99.83509 * 18 16 15 30 30 H 1.08997 * 109.21606 * 219.09688 * 18 16 15 31 31 H 1.09003 * 111.19616 * 269.81343 * 19 18 16 32 32 H 1.08993 * 111.24286 * 145.46310 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 1 3.8753 -0.6757 0.8924 11 7 4.0008 -0.5073 -1.1980 12 6 4.0140 -2.6147 0.0124 13 6 4.0407 -3.3396 -1.1644 14 6 4.5044 -4.6414 -1.1426 15 6 4.9247 -5.2092 0.0426 16 6 4.9064 -4.5004 1.2296 17 6 4.4377 -3.1834 1.1915 18 6 5.4152 -5.2390 2.4432 19 6 5.3726 -6.7642 2.2157 20 16 5.5463 -6.8362 0.3900 21 8 4.6077 -7.7328 -0.1883 22 8 6.9110 -6.8136 -0.0054 23 1 -0.4850 0.8400 0.0004 24 1 5.0073 -0.4371 -1.1903 25 1 3.6770 -0.9690 -2.0347 26 1 3.7059 -2.8937 -2.0894 27 1 4.5343 -5.2176 -2.0556 28 1 4.4056 -2.6043 2.1025 29 1 6.4426 -4.9349 2.6437 30 1 4.7942 -4.9872 3.3029 31 1 4.4198 -7.1843 2.5378 32 1 6.2070 -7.2608 2.7109 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260828557.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:43 Heat of formation + Delta-G solvation = -60.403855 kcal Electronic energy + Delta-G solvation = -17984.387134 eV Core-core repulsion = 15036.150829 eV Total energy + Delta-G solvation = -2948.236305 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.74050 -38.17360 -37.31063 -36.97634 -35.11305 -33.86410 -31.73161 -30.31551 -28.35730 -25.66531 -24.45750 -23.42107 -21.11660 -20.05252 -18.98604 -18.38397 -17.54116 -17.10491 -16.74434 -16.61153 -15.95836 -15.63781 -15.52905 -15.22686 -14.51551 -14.25153 -14.15176 -14.04334 -13.57421 -13.45326 -13.24647 -13.11689 -12.84253 -12.63296 -12.40859 -12.17708 -11.98527 -11.65740 -11.45729 -11.25314 -10.76588 -9.98764 -9.75536 -8.98547 -8.26545 -6.41647 -0.86953 -0.06836 0.29200 1.50644 1.58793 1.70553 1.93894 2.48627 2.59197 2.65133 3.11296 3.18641 3.42506 3.54082 3.78304 4.01984 4.12454 4.17232 4.30191 4.46248 4.54917 4.69499 4.77528 4.80900 4.93286 5.04478 5.12569 5.23893 5.45437 5.66704 5.90578 6.09938 6.43147 6.73384 6.97655 7.36964 8.86618 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.038573 B = 0.005041 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.720010 B = 5553.124746 C = 5618.275197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.028 3.972 3 Si 0.932 3.068 4 H -0.297 1.297 5 H -0.157 1.157 6 H -0.317 1.317 7 C -0.519 4.519 8 H 0.023 0.977 9 C 0.223 3.777 10 H 0.053 0.947 11 N -0.836 5.836 12 C -0.044 4.044 13 C -0.148 4.148 14 C -0.019 4.019 15 C -0.668 4.668 16 C -0.039 4.039 17 C -0.134 4.134 18 C -0.094 4.094 19 C -0.528 4.528 20 S 2.473 3.527 21 O -0.977 6.977 22 O -0.966 6.966 23 H 0.263 0.737 24 H 0.332 0.668 25 H 0.336 0.664 26 H 0.131 0.869 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.169 0.831 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.273 -11.451 6.095 20.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.171 4.171 3 Si 0.757 3.243 4 H -0.225 1.225 5 H -0.077 1.077 6 H -0.245 1.245 7 C -0.558 4.558 8 H 0.041 0.959 9 C 0.112 3.888 10 H 0.071 0.929 11 N -0.366 5.366 12 C -0.046 4.046 13 C -0.167 4.167 14 C -0.038 4.038 15 C -0.753 4.753 16 C -0.041 4.041 17 C -0.153 4.153 18 C -0.131 4.131 19 C -0.663 4.663 20 S 2.658 3.342 21 O -0.974 6.974 22 O -0.963 6.963 23 H 0.072 0.928 24 H 0.145 0.855 25 H 0.151 0.849 26 H 0.149 0.851 27 H 0.156 0.844 28 H 0.156 0.844 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.187 0.813 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 15.063 -11.417 5.660 19.730 hybrid contribution -0.696 0.802 -0.112 1.067 sum 14.368 -10.615 5.548 18.705 Atomic orbital electron populations 1.70101 1.09009 1.28245 1.51597 1.25918 0.95104 1.04016 0.92095 0.86254 0.84422 0.75805 0.77789 1.22501 1.07736 1.24502 1.20883 0.89916 0.92520 1.52435 0.95911 1.18405 0.93220 0.85554 0.91586 0.92905 1.59742 1.14608 1.57237 1.05042 1.21207 0.91041 0.98725 0.93661 1.21245 1.01588 0.94869 0.98979 1.20418 0.92443 0.94258 0.96667 1.30571 1.19284 1.25595 0.99861 1.20944 0.94359 0.94647 0.94164 1.21083 1.00788 0.95072 0.98402 1.20911 1.06203 0.89746 0.96271 1.30228 1.15792 1.02641 1.17607 1.06415 0.73463 0.73028 0.81304 1.93539 1.63505 1.63103 1.77300 1.93569 1.34161 1.86200 1.82340 0.92821 0.85467 0.84926 0.85098 0.84448 0.84410 0.85009 0.85136 0.81313 0.79119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.50 13.96 21.45 0.30 -59.20 16 2 C 0.03 1.57 5.47 84.65 0.46 2.03 16 3 Si 0.93 43.26 26.93 68.60 1.85 45.11 16 4 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 5 H -0.16 -6.35 5.18 99.48 0.52 -5.83 16 6 H -0.32 -15.36 7.11 99.48 0.71 -14.66 16 7 C -0.52 -28.47 9.28 25.60 0.24 -28.23 16 8 H 0.02 1.42 7.98 -2.91 -0.02 1.40 16 9 C 0.22 9.39 2.34 43.42 0.10 9.49 16 10 H 0.05 2.20 7.39 -2.39 -0.02 2.18 16 11 N -0.84 -30.90 5.68 -174.94 -0.99 -31.89 16 12 C -0.04 -1.65 4.86 -20.02 -0.10 -1.75 16 13 C -0.15 -5.25 9.31 22.27 0.21 -5.04 16 14 C -0.02 -0.62 10.02 22.20 0.22 -0.39 16 15 C -0.67 -19.20 6.16 22.21 0.14 -19.06 16 16 C -0.04 -1.02 5.97 -19.41 -0.12 -1.13 16 17 C -0.13 -4.28 9.59 22.50 0.22 -4.06 16 18 C -0.09 -1.27 6.25 30.35 0.19 -1.08 16 19 C -0.53 -5.12 7.66 72.41 0.56 -4.57 16 20 S 2.47 54.96 6.15 -56.49 -0.35 54.61 16 21 O -0.98 -28.98 18.01 -127.82 -2.30 -31.28 16 22 O -0.97 -26.66 18.01 -127.82 -2.30 -28.96 16 23 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 24 H 0.33 10.15 9.06 -89.70 -0.81 9.34 16 25 H 0.34 12.20 7.34 -89.70 -0.66 11.55 16 26 H 0.13 4.46 6.68 -2.91 -0.02 4.44 16 27 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 28 H 0.14 3.91 8.00 -2.91 -0.02 3.88 16 29 H 0.13 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.17 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.19 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -81.50 280.45 -2.18 -83.68 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -0.50 Total: 21.72 kcal Atomic # 6 Polarization: -55.90 SS G_CDS: 2.12 Total: -53.79 kcal Atomic # 7 Polarization: -90.40 SS G_CDS: -0.69 Total: -91.09 kcal Atomic # 8 Polarization: -55.64 SS G_CDS: -4.60 Total: -60.24 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.85 Total: 45.11 kcal Atomic # 16 Polarization: 54.96 SS G_CDS: -0.35 Total: 54.61 kcal Total: -81.50 -2.18 -83.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260828557.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.280 kcal (2) G-P(sol) polarization free energy of solvation -81.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds