Wall clock time and date at job start Mon Mar 30 2020 04:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86799 * 119.99823 * 2 1 4 4 H 1.48502 * 109.47195 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.46994 * 120.00150 * 3 2 1 6 6 H 1.48499 * 109.47150 * 240.00351 * 3 2 1 7 7 C 1.39925 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99933 * 206.33876 * 7 2 1 9 9 C 1.41046 * 120.00161 * 26.33789 * 7 2 1 10 10 C 1.40732 * 120.30467 * 25.54429 * 9 7 2 11 11 C 1.36450 * 119.94840 * 179.97438 * 10 9 7 12 12 C 1.38899 * 120.59826 * 0.02944 * 11 10 9 13 13 C 1.38167 * 120.62806 * 359.96963 * 12 11 10 14 14 C 1.38754 * 120.02262 * 359.72322 * 13 12 11 15 15 N 1.38733 * 120.29437 * 180.27300 * 14 13 12 16 16 C 1.47064 * 126.29589 * 84.98949 * 15 14 13 17 17 C 1.54324 * 109.96378 * 150.90772 * 16 15 14 18 18 C 1.55601 * 104.19414 * 45.50821 * 17 16 15 19 19 S 1.67003 * 126.30389 * 265.30343 * 15 14 13 20 20 O 1.42102 * 105.12904 * 298.88733 * 19 15 14 21 21 O 1.42099 * 105.13506 * 68.44085 * 19 15 14 22 22 H 0.97003 * 120.00058 * 185.88686 * 1 2 3 23 23 H 1.07995 * 120.02295 * 359.97438 * 10 9 7 24 24 H 1.07997 * 119.70192 * 180.02562 * 11 10 9 25 25 H 1.07995 * 119.68557 * 179.97438 * 12 11 10 26 26 H 1.07997 * 119.98885 * 179.97438 * 13 12 11 27 27 H 1.09005 * 109.35701 * 271.18137 * 16 15 14 28 28 H 1.08998 * 109.36140 * 30.82785 * 16 15 14 29 29 H 1.09000 * 110.64745 * 286.76863 * 17 16 15 30 30 H 1.09003 * 110.37899 * 164.10782 * 17 16 15 31 31 H 1.09002 * 111.16553 * 204.06566 * 18 17 16 32 32 H 1.08995 * 111.21188 * 79.80655 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 1.2777 2.7465 0.0006 5 1 3.0965 1.6964 1.2125 6 1 3.0964 1.6965 -1.2125 7 6 2.0084 -1.2118 -0.0005 8 1 3.0044 -1.2605 0.4144 9 6 1.4131 -2.3697 -0.5430 10 6 0.4145 -2.2595 -1.5285 11 6 -0.1562 -3.3845 -2.0487 12 6 0.2386 -4.6433 -1.6141 13 6 1.2167 -4.7796 -0.6477 14 6 1.8189 -3.6532 -0.1057 15 7 2.8056 -3.7837 0.8608 16 6 4.2394 -4.0021 0.6172 17 6 5.0681 -3.3926 1.7675 18 6 4.3308 -3.8570 3.0567 19 16 2.5827 -3.7289 2.5150 20 8 2.0563 -2.4350 2.7757 21 8 1.8553 -4.9081 2.8306 22 1 -0.4850 -0.8356 0.0862 23 1 0.1002 -1.2854 -1.8728 24 1 -0.9219 -3.2954 -2.8051 25 1 -0.2232 -5.5239 -2.0355 26 1 1.5155 -5.7634 -0.3171 27 1 4.4362 -5.0724 0.5542 28 1 4.5226 -3.5279 -0.3225 29 1 5.0737 -2.3046 1.7026 30 1 6.0861 -3.7818 1.7496 31 1 4.5346 -3.1851 3.8904 32 1 4.5898 -4.8849 3.3105 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261167219.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:00 Heat of formation + Delta-G solvation = -44.417730 kcal Electronic energy + Delta-G solvation = -18964.870381 eV Core-core repulsion = 16017.327285 eV Total energy + Delta-G solvation = -2947.543095 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.21411 -36.36961 -36.25780 -35.10130 -33.90747 -32.47884 -29.33419 -28.36222 -25.88937 -24.85417 -22.05212 -20.96302 -20.89467 -18.41192 -17.77484 -16.80031 -16.54116 -15.25483 -14.93247 -14.49302 -14.33589 -14.03008 -13.92093 -13.32902 -13.07623 -12.64584 -12.42300 -12.16367 -11.86877 -11.47437 -11.32075 -11.23731 -11.16214 -10.98413 -10.80800 -10.49463 -10.40268 -10.10751 -10.01154 -9.60865 -9.03092 -8.20277 -7.65194 -7.56874 -7.17443 -4.41076 0.74951 2.66026 2.81814 3.15873 3.22602 3.29270 3.35139 4.02475 4.18577 4.39975 4.55611 4.60279 4.87870 5.23098 5.30204 5.53327 5.62025 5.72035 5.95104 6.05027 6.14168 6.25578 6.40157 6.53780 6.91750 7.01099 7.20000 7.43194 7.76126 7.78076 7.89770 8.01225 8.15874 8.34899 8.77710 8.87051 10.01483 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.016590 B = 0.010979 C = 0.007930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.387905 B = 2549.682282 C = 3529.867787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.039 3.961 3 Si 1.062 2.938 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.467 4.467 8 H 0.079 0.921 9 C 0.096 3.904 10 C -0.211 4.211 11 C -0.077 4.077 12 C -0.260 4.260 13 C -0.056 4.056 14 C 0.015 3.985 15 N -0.896 5.896 16 C 0.080 3.920 17 C -0.122 4.122 18 C -0.615 4.615 19 S 2.549 3.451 20 O -0.935 6.935 21 O -0.973 6.973 22 H 0.302 0.698 23 H 0.108 0.892 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.131 0.869 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.388 -3.510 2.122 10.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.185 4.185 3 Si 0.886 3.114 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.495 4.495 8 H 0.097 0.903 9 C 0.090 3.910 10 C -0.231 4.231 11 C -0.096 4.096 12 C -0.280 4.280 13 C -0.078 4.078 14 C -0.080 4.080 15 N -0.730 5.730 16 C -0.046 4.046 17 C -0.161 4.161 18 C -0.743 4.743 19 S 2.648 3.352 20 O -0.924 6.924 21 O -0.963 6.963 22 H 0.116 0.884 23 H 0.126 0.874 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.113 0.887 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.149 0.851 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.251 -1.791 2.641 8.846 hybrid contribution 0.924 -1.889 -0.008 2.102 sum 9.175 -3.680 2.633 10.230 Atomic orbital electron populations 1.70441 1.08321 1.34571 1.26902 1.27068 0.95650 1.04487 0.91251 0.83686 0.75879 0.73924 0.77943 1.19747 1.19893 1.19964 1.20448 1.03228 0.93622 1.32191 0.90313 1.17886 0.90895 0.92084 0.90142 1.20851 1.03492 0.97416 1.01311 1.20422 0.97894 0.93142 0.98125 1.20166 1.05597 0.95972 1.06301 1.20878 0.95293 0.96402 0.95200 1.16577 0.99441 0.92348 0.99677 1.53423 1.09530 1.88653 1.21352 1.22100 0.82042 1.00144 1.00313 1.22632 1.00387 1.02930 0.90183 1.30910 1.26718 1.10020 1.06650 1.07682 0.76706 0.75321 0.75486 1.93644 1.75551 1.39409 1.83778 1.93531 1.68719 1.50312 1.83691 0.88449 0.87438 0.89099 0.88986 0.88710 0.91951 0.89210 0.88828 0.88278 0.85060 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.91 12.33 55.55 0.68 -20.23 16 2 C 0.04 1.00 4.91 -17.33 -0.09 0.91 16 3 Si 1.06 21.61 30.01 -169.99 -5.10 16.51 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.47 -12.11 7.67 -37.89 -0.29 -12.40 16 8 H 0.08 1.96 7.67 -52.49 -0.40 1.56 16 9 C 0.10 2.48 5.30 -106.63 -0.57 1.92 16 10 C -0.21 -5.29 7.93 -39.28 -0.31 -5.60 16 11 C -0.08 -1.76 9.97 -39.98 -0.40 -2.16 16 12 C -0.26 -5.79 10.03 -39.36 -0.40 -6.19 16 13 C -0.06 -1.30 9.96 -39.42 -0.39 -1.69 16 14 C 0.02 0.37 5.92 -83.29 -0.49 -0.12 16 15 N -0.90 -18.42 2.48 -57.11 -0.14 -18.57 16 16 C 0.08 1.22 6.76 -3.04 -0.02 1.20 16 17 C -0.12 -1.49 6.81 -24.65 -0.17 -1.65 16 18 C -0.61 -7.87 7.51 38.54 0.29 -7.58 16 19 S 2.55 50.39 6.10 -107.50 -0.66 49.74 16 20 O -0.93 -22.39 17.19 -57.43 -0.99 -23.38 16 21 O -0.97 -21.84 18.13 -57.43 -1.04 -22.88 16 22 H 0.30 8.39 6.78 -40.82 -0.28 8.12 16 23 H 0.11 2.74 6.53 -52.49 -0.34 2.40 16 24 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 25 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 26 H 0.09 2.00 8.06 -52.49 -0.42 1.58 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 284.33 15.07 4.28 4.28 Total: -1.00 -32.44 284.33 -9.41 -41.85 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -3.62 Total: 6.03 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: -2.83 Total: -33.36 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.54 Total: -38.80 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -2.03 Total: -46.26 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.10 Total: 16.51 kcal Atomic # 16 Polarization: 50.39 SS G_CDS: -0.66 Total: 49.74 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.44 -9.41 -41.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261167219.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.571 kcal (2) G-P(sol) polarization free energy of solvation -32.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds