Wall clock time and date at job start Mon Mar 30 2020 04:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86799 * 119.99823 * 2 1 4 4 H 1.48502 * 109.47195 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.46994 * 120.00150 * 3 2 1 6 6 H 1.48499 * 109.47150 * 240.00351 * 3 2 1 7 7 C 1.39925 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99933 * 206.33876 * 7 2 1 9 9 C 1.41046 * 120.00161 * 26.33789 * 7 2 1 10 10 C 1.40732 * 120.30467 * 25.54429 * 9 7 2 11 11 C 1.36450 * 119.94840 * 179.97438 * 10 9 7 12 12 C 1.38899 * 120.59826 * 0.02944 * 11 10 9 13 13 C 1.38167 * 120.62806 * 359.96963 * 12 11 10 14 14 C 1.38754 * 120.02262 * 359.72322 * 13 12 11 15 15 N 1.38733 * 120.29437 * 180.27300 * 14 13 12 16 16 C 1.47064 * 126.29589 * 84.98949 * 15 14 13 17 17 C 1.54324 * 109.96378 * 150.90772 * 16 15 14 18 18 C 1.55601 * 104.19414 * 45.50821 * 17 16 15 19 19 S 1.67003 * 126.30389 * 265.30343 * 15 14 13 20 20 O 1.42102 * 105.12904 * 298.88733 * 19 15 14 21 21 O 1.42099 * 105.13506 * 68.44085 * 19 15 14 22 22 H 0.97003 * 120.00058 * 185.88686 * 1 2 3 23 23 H 1.07995 * 120.02295 * 359.97438 * 10 9 7 24 24 H 1.07997 * 119.70192 * 180.02562 * 11 10 9 25 25 H 1.07995 * 119.68557 * 179.97438 * 12 11 10 26 26 H 1.07997 * 119.98885 * 179.97438 * 13 12 11 27 27 H 1.09005 * 109.35701 * 271.18137 * 16 15 14 28 28 H 1.08998 * 109.36140 * 30.82785 * 16 15 14 29 29 H 1.09000 * 110.64745 * 286.76863 * 17 16 15 30 30 H 1.09003 * 110.37899 * 164.10782 * 17 16 15 31 31 H 1.09002 * 111.16553 * 204.06566 * 18 17 16 32 32 H 1.08995 * 111.21188 * 79.80655 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 1.2777 2.7465 0.0006 5 1 3.0965 1.6964 1.2125 6 1 3.0964 1.6965 -1.2125 7 6 2.0084 -1.2118 -0.0005 8 1 3.0044 -1.2605 0.4144 9 6 1.4131 -2.3697 -0.5430 10 6 0.4145 -2.2595 -1.5285 11 6 -0.1562 -3.3845 -2.0487 12 6 0.2386 -4.6433 -1.6141 13 6 1.2167 -4.7796 -0.6477 14 6 1.8189 -3.6532 -0.1057 15 7 2.8056 -3.7837 0.8608 16 6 4.2394 -4.0021 0.6172 17 6 5.0681 -3.3926 1.7675 18 6 4.3308 -3.8570 3.0567 19 16 2.5827 -3.7289 2.5150 20 8 2.0563 -2.4350 2.7757 21 8 1.8553 -4.9081 2.8306 22 1 -0.4850 -0.8356 0.0862 23 1 0.1002 -1.2854 -1.8728 24 1 -0.9219 -3.2954 -2.8051 25 1 -0.2232 -5.5239 -2.0355 26 1 1.5155 -5.7634 -0.3171 27 1 4.4362 -5.0724 0.5542 28 1 4.5226 -3.5279 -0.3225 29 1 5.0737 -2.3046 1.7026 30 1 6.0861 -3.7818 1.7496 31 1 4.5346 -3.1851 3.8904 32 1 4.5898 -4.8849 3.3105 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261167219.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:00 Heat of formation + Delta-G solvation = -67.176164 kcal Electronic energy + Delta-G solvation = -18965.857260 eV Core-core repulsion = 16017.327285 eV Total energy + Delta-G solvation = -2948.529975 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.95977 -37.94857 -37.70831 -36.72825 -35.75618 -33.92612 -31.20187 -30.01641 -27.31670 -26.56420 -23.41457 -22.81937 -22.43837 -20.11919 -19.51200 -18.41637 -17.86709 -16.78314 -16.67169 -16.14736 -16.05118 -15.57509 -15.26729 -14.82316 -14.39845 -14.15188 -14.02287 -13.92321 -13.44790 -13.07470 -12.98262 -12.86018 -12.60939 -12.48929 -12.31664 -12.07023 -11.98780 -11.75135 -11.43286 -11.36728 -10.87027 -9.76508 -9.53123 -9.44842 -9.07610 -6.34566 -0.67950 0.84170 0.95452 1.49156 1.65957 1.74916 1.77148 2.35681 2.68790 2.85275 3.18771 3.43197 3.57907 3.73717 4.08456 4.35697 4.40451 4.43537 4.50381 4.65038 4.73721 4.87244 5.00215 5.06677 5.11209 5.26597 5.41320 5.55523 5.80955 5.92644 6.01200 6.18916 6.29908 6.49920 6.90175 7.01568 8.04121 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.016590 B = 0.010979 C = 0.007930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.387905 B = 2549.682282 C = 3529.867787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C -0.001 4.001 3 Si 1.109 2.891 4 H -0.274 1.274 5 H -0.260 1.260 6 H -0.253 1.253 7 C -0.497 4.497 8 H 0.079 0.921 9 C 0.067 3.933 10 C -0.235 4.235 11 C -0.083 4.083 12 C -0.253 4.253 13 C -0.076 4.076 14 C 0.017 3.983 15 N -0.913 5.913 16 C 0.067 3.933 17 C -0.117 4.117 18 C -0.554 4.554 19 S 2.519 3.481 20 O -0.995 6.995 21 O -1.015 7.015 22 H 0.281 0.719 23 H 0.091 0.909 24 H 0.117 0.883 25 H 0.123 0.877 26 H 0.113 0.887 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.155 0.845 31 H 0.165 0.835 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.804 -4.825 2.760 13.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.218 4.218 3 Si 0.926 3.074 4 H -0.199 1.199 5 H -0.184 1.184 6 H -0.177 1.177 7 C -0.525 4.525 8 H 0.097 0.903 9 C 0.061 3.939 10 C -0.255 4.255 11 C -0.101 4.101 12 C -0.273 4.273 13 C -0.097 4.097 14 C -0.079 4.079 15 N -0.747 5.747 16 C -0.058 4.058 17 C -0.156 4.156 18 C -0.689 4.689 19 S 2.624 3.376 20 O -0.985 6.985 21 O -1.005 7.005 22 H 0.092 0.908 23 H 0.109 0.891 24 H 0.135 0.865 25 H 0.141 0.859 26 H 0.131 0.869 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.173 0.827 31 H 0.183 0.817 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 11.600 -3.116 3.219 12.435 hybrid contribution 0.012 -1.755 -0.146 1.761 sum 11.612 -4.871 3.073 12.962 Atomic orbital electron populations 1.70568 1.09207 1.33018 1.30728 1.28494 0.95683 1.07893 0.89721 0.83152 0.75086 0.69901 0.79272 1.19903 1.18410 1.17716 1.20510 1.03543 0.94355 1.34063 0.90280 1.18300 0.91568 0.93337 0.90677 1.20871 1.04714 0.97581 1.02335 1.20723 0.98142 0.92801 0.98452 1.20586 1.04717 0.96745 1.05297 1.21203 0.95782 0.97013 0.95697 1.16825 0.99527 0.91945 0.99588 1.53497 1.11442 1.88600 1.21129 1.22494 0.79204 1.02303 1.01762 1.22826 1.02162 1.02902 0.87681 1.30604 1.16637 1.13743 1.07956 1.07957 0.80528 0.73739 0.75341 1.93586 1.79215 1.41413 1.84267 1.93476 1.72472 1.50654 1.83861 0.90754 0.89087 0.86514 0.85862 0.86862 0.89060 0.89734 0.89336 0.82701 0.81717 0.80993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.33 12.33 21.83 0.27 -46.06 16 2 C 0.00 -0.08 4.91 85.24 0.42 0.34 16 3 Si 1.11 44.45 30.01 68.60 2.06 46.51 16 4 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 6 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 7 C -0.50 -26.85 7.67 23.37 0.18 -26.67 16 8 H 0.08 4.07 7.67 -2.91 -0.02 4.05 16 9 C 0.07 3.61 5.30 -21.17 -0.11 3.49 16 10 C -0.23 -12.38 7.93 22.46 0.18 -12.20 16 11 C -0.08 -3.82 9.97 22.01 0.22 -3.60 16 12 C -0.25 -11.12 10.03 22.41 0.22 -10.90 16 13 C -0.08 -3.47 9.96 22.38 0.22 -3.24 16 14 C 0.02 0.81 5.92 38.99 0.23 1.04 16 15 N -0.91 -36.93 2.48 -334.61 -0.83 -37.75 16 16 C 0.07 1.82 6.76 86.72 0.59 2.41 16 17 C -0.12 -2.20 6.81 31.94 0.22 -1.98 16 18 C -0.55 -11.08 7.51 72.88 0.55 -10.53 16 19 S 2.52 97.73 6.10 -56.49 -0.34 97.38 16 20 O -1.00 -49.20 17.19 -127.76 -2.20 -51.40 16 21 O -1.01 -45.57 18.13 -127.76 -2.32 -47.89 16 22 H 0.28 16.89 6.78 -92.71 -0.63 16.26 16 23 H 0.09 4.98 6.53 -2.91 -0.02 4.96 16 24 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 25 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 26 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 27 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.16 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.16 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.17 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -78.05 284.33 0.82 -77.23 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 1.26 Total: 23.81 kcal Atomic # 6 Polarization: -64.74 SS G_CDS: 2.91 Total: -61.83 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -0.56 Total: -83.81 kcal Atomic # 8 Polarization: -94.77 SS G_CDS: -4.51 Total: -99.29 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.06 Total: 46.51 kcal Atomic # 16 Polarization: 97.73 SS G_CDS: -0.34 Total: 97.38 kcal Total: -78.05 0.82 -77.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261167219.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.056 kcal (2) G-P(sol) polarization free energy of solvation -78.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds