Wall clock time and date at job start Mon Mar 30 2020 05:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00087 * 2 1 4 4 C 1.50706 * 109.46958 * 269.99799 * 3 2 1 5 5 C 1.38386 * 120.00040 * 94.99954 * 4 3 2 6 6 N 1.32124 * 119.99712 * 179.97438 * 5 4 3 7 7 C 1.32158 * 120.00097 * 359.97438 * 6 5 4 8 8 C 1.38336 * 120.00075 * 0.26620 * 7 6 5 9 9 N 1.32127 * 120.00065 * 274.97742 * 4 3 2 10 10 C 1.34779 * 119.99877 * 179.97438 * 2 1 3 11 11 O 1.21283 * 120.00115 * 180.02562 * 10 2 1 12 12 C 1.50696 * 120.00039 * 359.97438 * 10 2 1 13 13 S 1.81001 * 109.47110 * 180.02562 * 12 10 2 14 14 C 1.76201 * 100.00158 * 180.02562 * 13 12 10 15 15 H 1.07997 * 119.99955 * 359.97438 * 14 13 12 16 16 C 1.38803 * 120.00050 * 180.02562 * 14 13 12 17 17 N 1.31634 * 119.99684 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 120.00071 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.47274 * 90.00105 * 18 16 14 20 20 H 1.48500 * 109.47103 * 210.00218 * 18 16 14 21 21 H 1.48498 * 109.47083 * 330.00347 * 18 16 14 22 22 H 1.09006 * 109.46890 * 90.00725 * 1 2 3 23 23 H 1.09003 * 109.47261 * 209.99828 * 1 2 3 24 24 H 1.08995 * 109.47565 * 330.00317 * 1 2 3 25 25 H 1.09000 * 109.46947 * 150.00207 * 3 2 1 26 26 H 1.08998 * 109.47234 * 29.99330 * 3 2 1 27 27 H 1.08005 * 120.00186 * 359.97438 * 5 4 3 28 28 H 1.08002 * 119.99718 * 179.97438 * 7 6 5 29 29 H 1.07998 * 120.00403 * 179.72028 * 8 7 6 30 30 H 1.08999 * 109.47566 * 300.00269 * 12 10 2 31 31 H 1.09004 * 109.47453 * 60.00409 * 12 10 2 32 32 H 0.96996 * 119.99371 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 6 1.5794 2.5856 -2.0385 6 7 1.7999 2.9673 -3.2840 7 6 2.8510 2.5073 -3.9398 8 6 3.7173 1.6218 -3.3241 9 7 3.4992 1.2433 -2.0768 10 6 2.1389 -1.1672 0.0005 11 8 3.3517 -1.1673 0.0010 12 6 1.3854 -2.4723 0.0017 13 16 2.5615 -3.8481 0.0029 14 6 1.4415 -5.2082 0.0034 15 1 0.3762 -5.0305 0.0033 16 6 1.9282 -6.5081 0.0048 17 7 1.0914 -7.5242 0.0057 18 14 3.7707 -6.8155 0.0057 19 1 4.2586 -6.8955 1.4060 20 1 4.0596 -8.0936 -0.6930 21 1 4.4587 -5.7017 -0.6953 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5137 25 1 3.1499 1.1383 0.5138 26 1 1.6084 2.0284 0.5137 27 1 0.7206 2.9619 -1.5024 28 1 3.0310 2.8190 -4.9581 29 1 4.5738 1.2423 -3.8615 30 1 0.7590 -2.5295 0.8919 31 1 0.7584 -2.5307 -0.8881 32 1 1.4316 -8.4326 0.0071 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265374643.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:25 Heat of formation + Delta-G solvation = 20.897793 kcal Electronic energy + Delta-G solvation = -17370.055927 eV Core-core repulsion = 14457.637877 eV Total energy + Delta-G solvation = -2912.418050 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.27997 -39.40372 -35.69023 -34.36231 -32.46949 -32.42915 -29.73542 -27.66759 -26.09643 -25.57400 -24.66168 -22.99271 -19.46058 -17.88989 -17.52431 -17.18689 -16.72596 -16.46105 -15.94989 -15.13616 -14.97614 -14.69296 -13.91603 -13.78345 -13.29704 -13.14232 -12.81913 -12.74119 -12.57980 -12.11897 -11.97323 -11.65209 -11.33923 -11.25300 -11.00413 -10.60069 -9.87075 -9.69851 -9.33134 -9.30732 -9.00041 -8.66313 -8.48297 -6.91389 -6.28902 -4.00416 0.52785 0.97611 2.69924 2.94244 3.15849 3.33489 3.51288 3.54095 3.68838 3.86489 4.05552 4.27428 4.33541 4.55963 4.62608 4.85077 5.00497 5.07533 5.10287 5.13572 5.22736 5.26912 5.35846 5.60336 5.64803 5.77899 5.99898 6.13840 6.44375 7.09849 7.37268 7.64133 7.94194 8.41265 8.44708 9.17484 10.80371 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.030519 B = 0.004516 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.240433 B = 6198.692156 C = 6565.969632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.621 5.621 3 C 0.170 3.830 4 C 0.063 3.937 5 C 0.056 3.944 6 N -0.441 5.441 7 C 0.044 3.956 8 C 0.053 3.947 9 N -0.408 5.408 10 C 0.529 3.471 11 O -0.496 6.496 12 C -0.120 4.120 13 S -0.141 6.141 14 C -0.521 4.521 15 H 0.088 0.912 16 C 0.096 3.904 17 N -0.881 5.881 18 Si 0.856 3.144 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.235 1.235 22 H 0.052 0.948 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.105 0.895 26 H 0.097 0.903 27 H 0.167 0.833 28 H 0.169 0.831 29 H 0.170 0.830 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.752 21.285 -3.304 21.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.358 5.358 3 C 0.045 3.955 4 C -0.079 4.079 5 C -0.104 4.104 6 N -0.156 5.156 7 C -0.116 4.116 8 C -0.107 4.107 9 N -0.123 5.123 10 C 0.316 3.684 11 O -0.368 6.368 12 C -0.270 4.270 13 S 0.085 5.915 14 C -0.669 4.669 15 H 0.106 0.894 16 C -0.112 4.112 17 N -0.517 5.517 18 Si 0.681 3.319 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.159 1.159 22 H 0.071 0.929 23 H 0.098 0.902 24 H 0.091 0.909 25 H 0.123 0.877 26 H 0.115 0.885 27 H 0.184 0.816 28 H 0.186 0.814 29 H 0.187 0.813 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.019 21.065 -3.287 21.344 hybrid contribution -0.908 -0.430 -0.207 1.026 sum 0.110 20.635 -3.495 20.929 Atomic orbital electron populations 1.21854 0.79209 1.03633 1.01886 1.47832 1.06849 1.04949 1.76130 1.20177 0.99750 0.85849 0.89702 1.22824 0.91764 0.94289 0.99005 1.23587 0.99364 0.95600 0.91859 1.68439 1.17796 1.21668 1.07667 1.23785 0.91317 0.95294 1.01222 1.23905 1.00059 0.94869 0.91837 1.68472 1.17378 1.18940 1.07537 1.20348 0.88101 0.84468 0.75440 1.90733 1.13378 1.86450 1.46270 1.23309 1.03073 0.95166 1.05471 1.84810 1.11868 0.97439 1.97399 1.22315 0.94871 0.90937 1.58763 0.89442 1.24704 0.98531 0.94852 0.93151 1.69941 1.34800 0.98880 1.48123 0.86740 0.85372 0.79819 0.79969 1.19167 1.19944 1.15911 0.92908 0.90162 0.90940 0.87709 0.88486 0.81616 0.81407 0.81311 0.88494 0.88772 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 10.29 59.85 0.62 1.34 16 2 N -0.62 -8.16 2.86 -182.95 -0.52 -8.68 16 3 C 0.17 1.89 5.78 -5.19 -0.03 1.86 16 4 C 0.06 0.76 6.37 -82.41 -0.52 0.24 16 5 C 0.06 0.57 10.86 -17.37 -0.19 0.38 16 6 N -0.44 -4.88 10.50 -13.06 -0.14 -5.02 16 7 C 0.04 0.42 11.22 -17.38 -0.20 0.23 16 8 C 0.05 0.59 11.22 -17.38 -0.20 0.40 16 9 N -0.41 -5.85 10.42 -9.29 -0.10 -5.94 16 10 C 0.53 9.64 7.69 -10.99 -0.08 9.56 16 11 O -0.50 -10.85 15.44 5.55 0.09 -10.77 16 12 C -0.12 -2.36 4.71 36.00 0.17 -2.19 16 13 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 14 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 15 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 16 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 17 N -0.88 -26.66 13.97 55.49 0.78 -25.88 16 18 Si 0.86 21.93 27.74 -169.99 -4.71 17.21 16 19 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.08 0.77 6.44 -51.93 -0.33 0.44 16 24 H 0.07 0.43 7.89 -51.93 -0.41 0.02 16 25 H 0.10 1.37 7.42 -51.93 -0.39 0.99 16 26 H 0.10 0.65 7.80 -51.93 -0.41 0.25 16 27 H 0.17 1.11 8.06 -52.48 -0.42 0.69 16 28 H 0.17 1.04 8.06 -52.49 -0.42 0.61 16 29 H 0.17 1.43 8.06 -52.49 -0.42 1.00 16 30 H 0.10 1.75 7.40 -51.92 -0.38 1.37 16 31 H 0.09 1.77 8.11 -51.91 -0.42 1.35 16 32 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 297.83 15.07 4.49 4.49 Total: -1.00 -36.59 297.83 -5.94 -42.53 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -3.61 Total: -2.09 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -0.22 Total: -0.24 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.02 Total: -45.52 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -36.59 -5.94 -42.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265374643.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.433 kcal (2) G-P(sol) polarization free energy of solvation -36.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds