Wall clock time and date at job start Mon Mar 30 2020 05:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00087 * 2 1 4 4 C 1.50706 * 109.46958 * 269.99799 * 3 2 1 5 5 C 1.38386 * 120.00040 * 94.99954 * 4 3 2 6 6 N 1.32124 * 119.99712 * 179.97438 * 5 4 3 7 7 C 1.32158 * 120.00097 * 359.97438 * 6 5 4 8 8 C 1.38336 * 120.00075 * 0.26620 * 7 6 5 9 9 N 1.32127 * 120.00065 * 274.97742 * 4 3 2 10 10 C 1.34779 * 119.99877 * 179.97438 * 2 1 3 11 11 O 1.21283 * 120.00115 * 180.02562 * 10 2 1 12 12 C 1.50696 * 120.00039 * 359.97438 * 10 2 1 13 13 S 1.81001 * 109.47110 * 180.02562 * 12 10 2 14 14 C 1.76201 * 100.00158 * 180.02562 * 13 12 10 15 15 H 1.07997 * 119.99955 * 359.97438 * 14 13 12 16 16 C 1.38803 * 120.00050 * 180.02562 * 14 13 12 17 17 N 1.31634 * 119.99684 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 120.00071 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.47274 * 90.00105 * 18 16 14 20 20 H 1.48500 * 109.47103 * 210.00218 * 18 16 14 21 21 H 1.48498 * 109.47083 * 330.00347 * 18 16 14 22 22 H 1.09006 * 109.46890 * 90.00725 * 1 2 3 23 23 H 1.09003 * 109.47261 * 209.99828 * 1 2 3 24 24 H 1.08995 * 109.47565 * 330.00317 * 1 2 3 25 25 H 1.09000 * 109.46947 * 150.00207 * 3 2 1 26 26 H 1.08998 * 109.47234 * 29.99330 * 3 2 1 27 27 H 1.08005 * 120.00186 * 359.97438 * 5 4 3 28 28 H 1.08002 * 119.99718 * 179.97438 * 7 6 5 29 29 H 1.07998 * 120.00403 * 179.72028 * 8 7 6 30 30 H 1.08999 * 109.47566 * 300.00269 * 12 10 2 31 31 H 1.09004 * 109.47453 * 60.00409 * 12 10 2 32 32 H 0.96996 * 119.99371 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 6 1.5794 2.5856 -2.0385 6 7 1.7999 2.9673 -3.2840 7 6 2.8510 2.5073 -3.9398 8 6 3.7173 1.6218 -3.3241 9 7 3.4992 1.2433 -2.0768 10 6 2.1389 -1.1672 0.0005 11 8 3.3517 -1.1673 0.0010 12 6 1.3854 -2.4723 0.0017 13 16 2.5615 -3.8481 0.0029 14 6 1.4415 -5.2082 0.0034 15 1 0.3762 -5.0305 0.0033 16 6 1.9282 -6.5081 0.0048 17 7 1.0914 -7.5242 0.0057 18 14 3.7707 -6.8155 0.0057 19 1 4.2586 -6.8955 1.4060 20 1 4.0596 -8.0936 -0.6930 21 1 4.4587 -5.7017 -0.6953 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5137 25 1 3.1499 1.1383 0.5138 26 1 1.6084 2.0284 0.5137 27 1 0.7206 2.9619 -1.5024 28 1 3.0310 2.8190 -4.9581 29 1 4.5738 1.2423 -3.8615 30 1 0.7590 -2.5295 0.8919 31 1 0.7584 -2.5307 -0.8881 32 1 1.4316 -8.4326 0.0071 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265374643.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:25 Heat of formation + Delta-G solvation = -6.447654 kcal Electronic energy + Delta-G solvation = -17371.241714 eV Core-core repulsion = 14457.637877 eV Total energy + Delta-G solvation = -2913.603838 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.10210 -40.67292 -36.84701 -35.22110 -34.68709 -33.36724 -31.06322 -28.60989 -27.87349 -27.00733 -25.46316 -23.89833 -20.82120 -19.60424 -18.61410 -18.06229 -17.87879 -17.37868 -17.24502 -17.00869 -16.25035 -15.91170 -15.42183 -14.92786 -14.83409 -14.44787 -14.08474 -13.63856 -13.44199 -13.39094 -13.34964 -13.02845 -12.92203 -12.60860 -12.48490 -12.21808 -11.88490 -11.18439 -10.98629 -10.53705 -10.29682 -10.18013 -9.66658 -9.01860 -8.53156 -6.24027 -0.24823 0.15791 0.97425 1.29805 1.45274 1.53254 1.55987 2.08898 2.23927 2.66928 2.82298 2.85207 3.13474 3.35797 3.48088 3.64177 3.86892 4.12858 4.14016 4.30932 4.37428 4.42004 4.46330 4.56967 4.69434 4.75021 4.95160 5.40281 5.48645 5.69269 6.09392 6.19343 6.34168 6.85218 6.92268 7.11604 8.59353 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.030519 B = 0.004516 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.240433 B = 6198.692156 C = 6565.969632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.607 5.607 3 C 0.169 3.831 4 C 0.045 3.955 5 C 0.067 3.933 6 N -0.460 5.460 7 C 0.052 3.948 8 C 0.037 3.963 9 N -0.458 5.458 10 C 0.528 3.472 11 O -0.543 6.543 12 C -0.104 4.104 13 S -0.178 6.178 14 C -0.529 4.529 15 H 0.062 0.938 16 C 0.048 3.952 17 N -0.916 5.916 18 Si 0.913 3.087 19 H -0.261 1.261 20 H -0.258 1.258 21 H -0.240 1.240 22 H 0.059 0.941 23 H 0.075 0.925 24 H 0.118 0.882 25 H 0.078 0.922 26 H 0.151 0.849 27 H 0.204 0.796 28 H 0.201 0.799 29 H 0.184 0.816 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.457 23.518 -3.529 23.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.341 5.341 3 C 0.045 3.955 4 C -0.097 4.097 5 C -0.093 4.093 6 N -0.174 5.174 7 C -0.107 4.107 8 C -0.123 4.123 9 N -0.174 5.174 10 C 0.315 3.685 11 O -0.419 6.419 12 C -0.255 4.255 13 S 0.049 5.951 14 C -0.676 4.676 15 H 0.080 0.920 16 C -0.157 4.157 17 N -0.554 5.554 18 Si 0.735 3.265 19 H -0.185 1.185 20 H -0.182 1.182 21 H -0.164 1.164 22 H 0.077 0.923 23 H 0.094 0.906 24 H 0.136 0.864 25 H 0.097 0.903 26 H 0.168 0.832 27 H 0.221 0.779 28 H 0.218 0.782 29 H 0.201 0.799 30 H 0.133 0.867 31 H 0.121 0.879 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.265 23.333 -3.516 23.598 hybrid contribution -0.815 -0.957 -0.172 1.269 sum -0.550 22.376 -3.688 22.685 Atomic orbital electron populations 1.22189 0.76453 1.05749 1.02962 1.47793 1.08486 1.04086 1.73751 1.20455 0.99455 0.85698 0.89853 1.22967 0.92086 0.95379 0.99275 1.24077 0.99510 0.94166 0.91557 1.68549 1.18360 1.22239 1.08264 1.24272 0.90236 0.93896 1.02304 1.24249 1.01175 0.95544 0.91332 1.68392 1.19148 1.20625 1.09229 1.20067 0.87446 0.85355 0.75668 1.90716 1.15105 1.87157 1.48968 1.23275 1.01695 0.93777 1.06747 1.84753 1.13852 0.98978 1.97551 1.22445 0.94345 0.92505 1.58323 0.91972 1.25528 1.02653 0.94725 0.92834 1.70013 1.36743 0.99537 1.49130 0.85886 0.80294 0.80013 0.80301 1.18527 1.18211 1.16397 0.92271 0.90641 0.86380 0.90328 0.83174 0.77931 0.78178 0.79860 0.86742 0.87913 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 10.29 127.77 1.31 2.33 16 2 N -0.61 -14.57 2.86 -851.12 -2.43 -17.00 16 3 C 0.17 3.35 5.78 85.64 0.50 3.85 16 4 C 0.04 1.00 6.37 42.55 0.27 1.27 16 5 C 0.07 1.14 10.86 84.68 0.92 2.06 16 6 N -0.46 -8.90 10.50 -195.22 -2.05 -10.95 16 7 C 0.05 0.90 11.22 84.67 0.95 1.85 16 8 C 0.04 0.79 11.22 84.67 0.95 1.74 16 9 N -0.46 -12.95 10.42 -183.29 -1.91 -14.86 16 10 C 0.53 18.92 7.69 87.66 0.67 19.59 16 11 O -0.54 -24.09 15.44 -3.04 -0.05 -24.13 16 12 C -0.10 -4.06 4.71 71.23 0.34 -3.72 16 13 S -0.18 -9.22 18.55 -56.49 -1.05 -10.27 16 14 C -0.53 -31.15 10.04 67.96 0.68 -30.47 16 15 H 0.06 3.85 8.03 -2.91 -0.02 3.82 16 16 C 0.05 2.85 5.50 84.86 0.47 3.32 16 17 N -0.92 -56.08 13.97 21.65 0.30 -55.78 16 18 Si 0.91 45.59 27.74 68.60 1.90 47.49 16 19 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.24 -12.09 6.74 99.48 0.67 -11.42 16 22 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 23 H 0.07 1.23 6.44 -2.39 -0.02 1.22 16 24 H 0.12 0.74 7.89 -2.39 -0.02 0.72 16 25 H 0.08 2.02 7.42 -2.39 -0.02 2.00 16 26 H 0.15 1.30 7.80 -2.39 -0.02 1.29 16 27 H 0.20 1.69 8.06 -2.91 -0.02 1.67 16 28 H 0.20 1.91 8.06 -2.91 -0.02 1.88 16 29 H 0.18 3.03 8.06 -2.91 -0.02 3.01 16 30 H 0.11 4.03 7.40 -2.40 -0.02 4.01 16 31 H 0.10 3.81 8.11 -2.39 -0.02 3.79 16 32 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -82.09 297.83 2.87 -79.22 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: 1.09 Total: 4.47 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 7.06 Total: 1.81 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -6.09 Total: -98.59 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.90 Total: 47.49 kcal Atomic # 16 Polarization: -9.22 SS G_CDS: -1.05 Total: -10.27 kcal Total: -82.09 2.87 -79.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265374643.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.770 kcal (2) G-P(sol) polarization free energy of solvation -82.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds