Wall clock time and date at job start Mon Mar 30 2020 04:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86793 * 120.00002 * 2 1 4 4 H 1.48502 * 109.47251 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47249 * 299.99549 * 3 2 1 6 6 H 1.48501 * 109.47192 * 59.99861 * 3 2 1 7 7 C 1.40050 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00066 * 180.02562 * 7 2 1 9 9 C 1.46372 * 119.99914 * 0.02562 * 7 2 1 10 10 O 1.21688 * 120.00251 * 7.83991 * 9 7 2 11 11 N 1.34780 * 119.99980 * 187.84177 * 9 7 2 12 12 C 1.47150 * 120.98110 * 175.24887 * 11 9 7 13 13 C 1.53302 * 108.38631 * 230.55853 * 12 11 9 14 14 O 1.42962 * 109.21856 * 307.69945 * 13 12 11 15 15 C 1.42965 * 114.16788 * 62.57982 * 14 13 12 16 16 H 1.09000 * 109.51090 * 57.39178 * 15 14 13 17 17 C 1.50704 * 109.51310 * 177.49265 * 15 14 13 18 18 C 1.33392 * 125.20283 * 220.00284 * 17 15 14 19 19 C 1.38418 * 114.91869 * 179.97438 * 18 17 15 20 20 C 1.33386 * 114.92490 * 359.97438 * 19 18 17 21 21 S 1.75884 * 109.59283 * 0.24073 * 20 19 18 22 22 C 1.47154 * 120.98190 * 355.27578 * 11 9 7 23 23 H 0.97000 * 120.00253 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.68437 * 110.83711 * 12 11 9 25 25 H 1.08994 * 109.71583 * 350.29826 * 12 11 9 26 26 H 1.08991 * 109.51597 * 187.77841 * 13 12 11 27 27 H 1.08996 * 109.51227 * 67.62146 * 13 12 11 28 28 H 1.08001 * 122.53730 * 359.94043 * 18 17 15 29 29 H 1.08001 * 122.54021 * 179.97438 * 19 18 17 30 30 H 1.08002 * 125.20919 * 179.97438 * 20 19 18 31 31 H 1.09002 * 109.67921 * 9.71509 * 22 11 9 32 32 H 1.08994 * 109.67739 * 249.16451 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3463 0.0006 5 1 1.8820 2.3964 -1.2126 6 1 1.8819 2.3964 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0668 -2.4855 -0.1437 11 7 1.9395 -3.6422 0.1603 12 6 1.2168 -4.9195 0.2676 13 6 1.7306 -5.6634 1.5056 14 8 3.1569 -5.7437 1.4481 15 6 3.8160 -4.4753 1.4728 16 1 3.5259 -3.9318 2.3720 17 6 5.3086 -4.6835 1.4700 18 6 6.1850 -3.9764 2.1849 19 6 7.5078 -4.3493 2.0203 20 6 7.7057 -5.3596 1.1722 21 16 6.1619 -5.8927 0.5195 22 6 3.4089 -3.6707 0.2332 23 1 -0.4850 0.8400 -0.0004 24 1 1.3988 -5.5203 -0.6235 25 1 0.1484 -4.7300 0.3705 26 1 1.3100 -6.6687 1.5271 27 1 1.4323 -5.1238 2.4044 28 1 5.8852 -3.1734 2.8420 29 1 8.3184 -3.8594 2.5393 30 1 8.6671 -5.7825 0.9210 31 1 3.7922 -2.6534 0.3136 32 1 3.8116 -4.1457 -0.6613 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274267069.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:07 Heat of formation + Delta-G solvation = -59.718624 kcal Electronic energy + Delta-G solvation = -18124.986087 eV Core-core repulsion = 15176.779496 eV Total energy + Delta-G solvation = -2948.206592 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.87350 -38.94027 -38.26097 -35.28611 -34.67988 -33.36993 -30.41239 -28.61678 -27.61344 -25.51930 -24.11405 -22.89469 -21.05816 -20.11413 -18.88837 -18.22724 -17.81792 -17.22067 -16.54037 -16.31451 -16.14127 -15.95520 -15.33548 -15.14708 -14.49252 -13.88588 -13.76489 -13.61365 -13.35855 -13.24434 -13.10847 -12.87696 -12.78963 -12.43285 -12.20034 -12.00425 -11.77901 -11.50588 -11.12438 -10.97147 -9.92466 -9.67729 -9.33463 -9.11849 -8.34815 -6.90037 0.06620 0.73985 1.19321 1.37850 1.38900 1.56468 1.83811 2.19907 2.39820 2.58877 2.68235 3.51131 3.77398 3.87397 4.00721 4.12246 4.27222 4.30217 4.40596 4.56257 4.65388 4.70981 4.75289 4.78383 4.94943 5.22741 5.32671 5.40545 5.59328 5.59779 6.00783 6.04614 6.25838 6.82740 7.27718 8.37006 8.60977 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.020340 B = 0.006374 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.270816 B = 4391.578379 C = 5486.208006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.031 3.969 3 Si 0.994 3.006 4 H -0.244 1.244 5 H -0.269 1.269 6 H -0.266 1.266 7 C -0.568 4.568 8 H 0.092 0.908 9 C 0.543 3.457 10 O -0.627 6.627 11 N -0.650 5.650 12 C 0.080 3.920 13 C 0.062 3.938 14 O -0.381 6.381 15 C 0.155 3.845 16 H 0.072 0.928 17 C -0.192 4.192 18 C -0.129 4.129 19 C -0.141 4.141 20 C -0.211 4.211 21 S 0.111 5.889 22 C 0.105 3.895 23 H 0.276 0.724 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.136 0.864 27 H 0.048 0.952 28 H 0.150 0.850 29 H 0.168 0.832 30 H 0.193 0.807 31 H 0.096 0.904 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.001 -8.581 4.441 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.184 4.184 3 Si 0.813 3.187 4 H -0.167 1.167 5 H -0.194 1.194 6 H -0.191 1.191 7 C -0.604 4.604 8 H 0.110 0.890 9 C 0.350 3.650 10 O -0.514 6.514 11 N -0.387 5.387 12 C -0.044 4.044 13 C -0.015 4.015 14 O -0.300 6.300 15 C 0.095 3.905 16 H 0.089 0.911 17 C -0.310 4.310 18 C -0.160 4.160 19 C -0.171 4.171 20 C -0.346 4.346 21 S 0.375 5.625 22 C -0.019 4.019 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.153 0.847 27 H 0.066 0.934 28 H 0.167 0.833 29 H 0.185 0.815 30 H 0.210 0.790 31 H 0.114 0.886 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.842 -9.812 3.311 18.098 hybrid contribution -0.062 1.963 0.827 2.130 sum 14.780 -7.850 4.138 17.239 Atomic orbital electron populations 1.70171 1.09550 1.29061 1.36251 1.26976 0.95504 1.04890 0.91079 0.85018 0.79551 0.75441 0.78666 1.16723 1.19422 1.19071 1.21474 0.94721 0.89637 1.54548 0.88967 1.18688 0.86511 0.83847 0.75988 1.90541 1.16833 1.87086 1.56989 1.48194 1.06099 1.06186 1.78239 1.22016 0.97877 0.85627 0.98838 1.23020 0.80113 1.02476 0.95914 1.87884 1.19287 1.27954 1.94925 1.20610 0.86924 0.85138 0.97841 0.91061 1.24060 0.96823 1.04264 1.05868 1.20403 0.92901 1.01672 1.01038 1.20372 0.96827 0.98708 1.01157 1.26108 1.01740 1.02987 1.03781 1.84391 0.98227 1.35415 1.44449 1.22156 0.80945 1.01885 0.96903 0.91433 0.91939 0.91172 0.84654 0.93398 0.83288 0.81495 0.79036 0.88634 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.95 11.86 21.84 0.26 -49.69 16 2 C 0.03 1.71 5.50 85.30 0.47 2.17 16 3 Si 0.99 40.33 29.56 68.60 2.03 42.36 16 4 H -0.24 -9.09 7.11 99.48 0.71 -8.39 16 5 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 7 C -0.57 -31.98 8.86 24.83 0.22 -31.76 16 8 H 0.09 4.67 5.73 -2.91 -0.02 4.65 16 9 C 0.54 31.92 7.62 86.36 0.66 32.58 16 10 O -0.63 -42.35 14.56 -4.31 -0.06 -42.41 16 11 N -0.65 -30.71 3.02 -822.44 -2.48 -33.19 16 12 C 0.08 3.22 6.62 86.36 0.57 3.79 16 13 C 0.06 1.98 6.99 72.08 0.50 2.48 16 14 O -0.38 -12.64 10.19 -148.98 -1.52 -14.16 16 15 C 0.16 5.18 3.22 29.95 0.10 5.28 16 16 H 0.07 2.46 8.12 -2.39 -0.02 2.44 16 17 C -0.19 -5.45 5.48 24.59 0.13 -5.31 16 18 C -0.13 -3.11 10.04 21.22 0.21 -2.89 16 19 C -0.14 -2.70 10.18 21.21 0.22 -2.49 16 20 C -0.21 -3.93 11.23 66.72 0.75 -3.18 16 21 S 0.11 2.73 23.13 -56.49 -1.31 1.42 16 22 C 0.11 4.10 5.83 86.35 0.50 4.61 16 23 H 0.28 15.12 8.29 -92.71 -0.77 14.35 16 24 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.07 3.14 7.12 -2.39 -0.02 3.12 16 26 H 0.14 3.28 8.14 -2.39 -0.02 3.26 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 28 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 29 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 30 H 0.19 2.31 8.06 -2.91 -0.02 2.28 16 31 H 0.10 3.85 5.41 -2.39 -0.01 3.84 16 32 H 0.06 2.16 8.13 -2.39 -0.02 2.14 16 Total: -1.00 -75.26 286.59 2.39 -72.87 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 1.14 Total: 17.50 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 4.33 Total: 5.29 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -2.22 Total: -82.88 kcal Atomic # 8 Polarization: -54.98 SS G_CDS: -1.58 Total: -56.57 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.31 Total: 1.42 kcal Total: -75.26 2.39 -72.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274267069.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.154 kcal (2) G-P(sol) polarization free energy of solvation -75.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds