Wall clock time and date at job start Mon Mar 30 2020 04:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86805 * 119.99433 * 2 1 4 4 H 1.48500 * 109.46860 * 239.99962 * 3 2 1 5 5 H 1.48491 * 109.47444 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47007 * 120.00383 * 3 2 1 7 7 C 1.40043 * 120.00276 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99894 * 158.64829 * 7 2 1 9 9 C 1.46377 * 120.00166 * 338.64574 * 7 2 1 10 10 O 1.21689 * 119.99819 * 341.57368 * 9 7 2 11 11 N 1.34776 * 119.99950 * 161.57000 * 9 7 2 12 12 C 1.47147 * 120.98090 * 175.19659 * 11 9 7 13 13 C 1.53298 * 108.38635 * 129.44142 * 12 11 9 14 14 O 1.42959 * 109.22340 * 52.30089 * 13 12 11 15 15 C 1.42966 * 114.16851 * 297.42616 * 14 13 12 16 16 H 1.09008 * 109.50715 * 302.65205 * 15 14 13 17 17 C 1.50701 * 109.51400 * 182.55509 * 15 14 13 18 18 C 1.38423 * 122.53826 * 144.99736 * 17 15 14 19 19 C 1.33391 * 114.91848 * 179.97438 * 18 17 15 20 20 S 1.75884 * 109.59335 * 359.97438 * 19 18 17 21 21 C 1.33387 * 122.53715 * 324.70101 * 17 15 14 22 22 C 1.47148 * 120.98167 * 354.91490 * 11 9 7 23 23 H 0.97011 * 119.99563 * 174.19472 * 1 2 3 24 24 H 1.08995 * 109.68288 * 249.16622 * 12 11 9 25 25 H 1.09006 * 109.68392 * 9.72081 * 12 11 9 26 26 H 1.08998 * 109.51218 * 172.22708 * 13 12 11 27 27 H 1.09003 * 109.50972 * 292.38234 * 13 12 11 28 28 H 1.07999 * 122.54172 * 359.97438 * 18 17 15 29 29 H 1.07993 * 125.20547 * 179.97438 * 19 18 17 30 30 H 1.07999 * 125.20234 * 0.03004 * 21 17 15 31 31 H 1.09000 * 109.68665 * 350.28275 * 22 11 9 32 32 H 1.08997 * 109.68436 * 110.83729 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 3.0943 1.6966 -1.2125 5 1 1.2756 2.7465 0.0006 6 1 3.0944 1.6966 1.2124 7 6 2.0070 -1.2128 -0.0005 8 1 3.0314 -1.2447 -0.3411 9 6 1.3506 -2.4372 0.4605 10 8 0.3466 -2.3687 1.1447 11 7 1.8581 -3.6404 0.1272 12 6 1.2786 -4.8819 0.6638 13 6 1.0126 -5.8364 -0.5059 14 8 2.2060 -5.9758 -1.2805 15 6 2.6576 -4.7609 -1.8837 16 1 1.8682 -4.3526 -2.5150 17 6 3.8791 -5.0385 -2.7215 18 6 4.1376 -4.3696 -3.9055 19 6 5.2618 -4.7350 -4.5235 20 16 6.0669 -5.9897 -3.5903 21 6 4.7960 -5.9433 -2.3753 22 6 3.0042 -3.7516 -0.7890 23 1 -0.4850 -0.8359 -0.0850 24 1 1.9784 -5.3422 1.3613 25 1 0.3425 -4.6589 1.1758 26 1 0.7132 -6.8108 -0.1198 27 1 0.2173 -5.4320 -1.1321 28 1 3.4790 -3.6095 -4.2991 29 1 5.6225 -4.3233 -5.4545 30 1 4.7622 -6.5551 -1.4859 31 1 3.2105 -2.7803 -1.2386 32 1 3.8808 -4.0961 -0.2403 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274720661.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:10 Heat of formation + Delta-G solvation = -72.668227 kcal Electronic energy + Delta-G solvation = -18226.335633 eV Core-core repulsion = 15277.567504 eV Total energy + Delta-G solvation = -2948.768129 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.14257 -39.39068 -38.21230 -35.46800 -34.69781 -32.82522 -30.28342 -28.99483 -27.51695 -25.73151 -24.31751 -22.77893 -21.24901 -19.85295 -19.28862 -18.57586 -17.73393 -17.44241 -16.68810 -16.27083 -16.02434 -15.66958 -15.45481 -15.16074 -14.61757 -14.17390 -13.94678 -13.75944 -13.61900 -13.33066 -13.11941 -12.71732 -12.62415 -12.50082 -12.16119 -11.90765 -11.85934 -11.57065 -11.17513 -10.87097 -10.04564 -9.74329 -9.50306 -9.23150 -8.98513 -6.98587 0.07817 0.74852 1.04197 1.50228 1.54832 1.63618 1.82345 2.25031 2.35697 2.55103 2.66850 3.30235 3.78005 3.91624 3.95173 4.05300 4.15979 4.26031 4.36274 4.50554 4.55600 4.65739 4.71136 4.73466 4.88269 5.08038 5.36706 5.40487 5.50723 5.64468 5.94940 6.04284 6.07267 6.67845 7.21645 8.08621 8.22399 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.019834 B = 0.006124 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.400005 B = 4571.266252 C = 5667.926974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.007 3.993 3 Si 1.127 2.873 4 H -0.246 1.246 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.636 4.636 8 H 0.087 0.913 9 C 0.543 3.457 10 O -0.665 6.665 11 N -0.645 5.645 12 C 0.077 3.923 13 C 0.061 3.939 14 O -0.378 6.378 15 C 0.147 3.853 16 H 0.055 0.945 17 C -0.112 4.112 18 C -0.143 4.143 19 C -0.204 4.204 20 S 0.126 5.874 21 C -0.192 4.192 22 C 0.107 3.893 23 H 0.277 0.723 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.138 0.862 27 H 0.042 0.958 28 H 0.146 0.854 29 H 0.193 0.807 30 H 0.169 0.831 31 H 0.090 0.910 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.314 -10.646 -9.638 18.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.208 4.208 3 Si 0.943 3.057 4 H -0.170 1.170 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.671 4.671 8 H 0.105 0.895 9 C 0.352 3.648 10 O -0.557 6.557 11 N -0.381 5.381 12 C -0.046 4.046 13 C -0.016 4.016 14 O -0.296 6.296 15 C 0.086 3.914 16 H 0.073 0.927 17 C -0.125 4.125 18 C -0.173 4.173 19 C -0.340 4.340 20 S 0.389 5.611 21 C -0.327 4.327 22 C -0.016 4.016 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.155 0.845 27 H 0.060 0.940 28 H 0.163 0.837 29 H 0.210 0.790 30 H 0.186 0.814 31 H 0.109 0.891 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.034 -10.080 -9.448 18.993 hybrid contribution -1.849 -0.776 0.545 2.078 sum 11.185 -10.856 -8.903 17.950 Atomic orbital electron populations 1.70326 1.09501 1.33069 1.32872 1.28503 0.95697 1.07401 0.89236 0.82945 0.74464 0.69083 0.79257 1.16998 1.20069 1.19098 1.22187 1.02054 0.93111 1.49746 0.89541 1.18719 0.82736 0.83828 0.79543 1.90468 1.31066 1.87634 1.46549 1.48072 1.34913 1.05339 1.49739 1.22092 0.99585 0.85704 0.97213 1.22997 0.86334 1.01014 0.91247 1.87861 1.43477 1.31115 1.67197 1.20710 0.93680 0.85018 0.92040 0.92672 1.18542 0.96671 1.00291 0.97033 1.20107 0.99435 1.02737 0.95024 1.25880 0.99342 1.02965 1.05772 1.84021 1.24644 1.37438 1.14954 1.25607 0.98128 1.04219 1.04784 1.22037 0.88246 1.00545 0.90815 0.91103 0.91293 0.91193 0.84461 0.93992 0.83661 0.78952 0.81359 0.89142 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -51.33 13.21 21.83 0.29 -51.04 16 2 C 0.01 0.40 5.34 85.30 0.46 0.86 16 3 Si 1.13 46.08 29.98 68.60 2.06 48.14 16 4 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 5 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 6 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 7 C -0.64 -35.98 8.43 24.83 0.21 -35.77 16 8 H 0.09 4.48 6.41 -2.91 -0.02 4.46 16 9 C 0.54 31.59 7.24 86.36 0.63 32.22 16 10 O -0.66 -43.77 14.30 -4.31 -0.06 -43.83 16 11 N -0.65 -30.26 3.03 -823.25 -2.49 -32.75 16 12 C 0.08 3.05 6.65 86.36 0.57 3.63 16 13 C 0.06 1.94 6.99 72.08 0.50 2.44 16 14 O -0.38 -12.24 9.86 -148.98 -1.47 -13.71 16 15 C 0.15 4.90 3.06 29.81 0.09 4.99 16 16 H 0.06 1.98 8.11 -2.38 -0.02 1.96 16 17 C -0.11 -3.14 4.91 -20.92 -0.10 -3.24 16 18 C -0.14 -3.49 9.96 21.22 0.21 -3.27 16 19 C -0.20 -3.94 11.23 66.72 0.75 -3.20 16 20 S 0.13 2.40 23.34 -56.49 -1.32 1.08 16 21 C -0.19 -4.71 10.52 66.72 0.70 -4.01 16 22 C 0.11 4.17 5.70 86.22 0.49 4.66 16 23 H 0.28 18.38 6.70 -92.70 -0.62 17.76 16 24 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.07 3.07 7.06 -2.38 -0.02 3.06 16 26 H 0.14 3.24 8.14 -2.39 -0.02 3.22 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 29 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16 30 H 0.17 3.98 7.98 -2.91 -0.02 3.96 16 31 H 0.09 3.72 5.77 -2.39 -0.01 3.71 16 32 H 0.06 2.30 8.13 -2.39 -0.02 2.28 16 Total: -1.00 -73.65 285.78 2.80 -70.85 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 1.28 Total: 21.96 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 4.51 Total: -0.70 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -2.20 Total: -83.79 kcal Atomic # 8 Polarization: -56.02 SS G_CDS: -1.53 Total: -57.55 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.06 Total: 48.14 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.32 Total: 1.08 kcal Total: -73.65 2.80 -70.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274720661.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.816 kcal (2) G-P(sol) polarization free energy of solvation -73.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds