Wall clock time and date at job start Mon Mar 30 2020 04:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86797 * 120.00222 * 2 1 4 4 H 1.48503 * 109.46888 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.47418 * 240.00539 * 3 2 1 6 6 H 1.48495 * 109.47220 * 120.00071 * 3 2 1 7 7 C 1.40047 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99863 * 6.00599 * 7 2 1 9 9 C 1.46374 * 120.00220 * 186.00553 * 7 2 1 10 10 O 1.21691 * 120.00132 * 352.55860 * 9 7 2 11 11 N 1.34772 * 120.00062 * 172.56186 * 9 7 2 12 12 C 1.47154 * 120.98377 * 174.94863 * 11 9 7 13 13 C 1.53297 * 108.38811 * 230.51254 * 12 11 9 14 14 O 1.42967 * 109.22281 * 307.69935 * 13 12 11 15 15 C 1.42959 * 114.16446 * 62.57454 * 14 13 12 16 16 H 1.08998 * 109.51720 * 57.35174 * 15 14 13 17 17 C 1.50702 * 109.51042 * 177.44756 * 15 14 13 18 18 C 1.38422 * 122.54343 * 219.74092 * 17 15 14 19 19 C 1.33390 * 114.92587 * 179.75830 * 18 17 15 20 20 S 1.75886 * 109.58893 * 0.47840 * 19 18 17 21 21 C 1.33399 * 122.53706 * 40.02603 * 17 15 14 22 22 C 1.47158 * 120.98326 * 354.66705 * 11 9 7 23 23 H 0.97004 * 120.00352 * 175.31795 * 1 2 3 24 24 H 1.09006 * 109.67842 * 350.23744 * 12 11 9 25 25 H 1.08995 * 109.68378 * 110.75032 * 12 11 9 26 26 H 1.09004 * 109.51230 * 67.61676 * 13 12 11 27 27 H 1.08994 * 109.51603 * 187.72080 * 13 12 11 28 28 H 1.07997 * 122.53515 * 359.97438 * 18 17 15 29 29 H 1.07999 * 125.21141 * 180.20423 * 19 18 17 30 30 H 1.07988 * 125.20140 * 359.97438 * 21 17 15 31 31 H 1.08997 * 109.68025 * 249.20955 * 22 11 9 32 32 H 1.09000 * 109.67815 * 9.76189 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2757 2.7464 0.0006 5 1 3.0945 1.6964 -1.2126 6 1 3.0945 1.6963 1.2124 7 6 2.0069 -1.2128 -0.0005 8 1 1.4714 -2.1455 -0.0988 9 6 3.4647 -1.2164 0.1321 10 8 4.0805 -0.1672 0.1066 11 7 4.1248 -2.3817 0.2823 12 6 5.5956 -2.4215 0.3071 13 6 6.0673 -3.4877 -0.6883 14 8 5.3942 -4.7187 -0.4136 15 6 3.9750 -4.6582 -0.5742 16 1 3.7366 -4.3402 -1.5891 17 6 3.3813 -6.0200 -0.3210 18 6 2.3428 -6.5323 -1.0795 19 6 1.9383 -7.7534 -0.7267 20 16 2.8874 -8.3164 0.6429 21 6 3.8130 -6.8208 0.6546 22 6 3.3960 -3.6513 0.4327 23 1 -0.4851 -0.8372 -0.0686 24 1 5.9940 -1.4486 0.0192 25 1 5.9391 -2.6767 1.3095 26 1 5.8366 -3.1654 -1.7037 27 1 7.1432 -3.6297 -0.5870 28 1 1.8965 -5.9861 -1.8973 29 1 1.1459 -8.3095 -1.2056 30 1 4.6093 -6.5868 1.3455 31 1 3.5219 -4.0289 1.4474 32 1 2.3371 -3.4932 0.2280 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274720663.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:12 Heat of formation + Delta-G solvation = -52.083708 kcal Electronic energy + Delta-G solvation = -18227.260802 eV Core-core repulsion = 15279.385285 eV Total energy + Delta-G solvation = -2947.875517 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.73474 -37.92954 -36.87919 -33.75685 -33.00996 -31.55598 -29.13136 -27.47727 -25.93056 -24.52776 -22.92185 -21.31230 -19.28098 -18.77624 -17.86016 -17.35267 -16.27120 -16.05899 -15.35055 -14.91678 -14.62792 -14.11083 -13.88648 -13.61076 -13.00300 -12.94273 -12.70323 -12.42833 -12.27673 -12.22012 -11.84791 -11.38663 -11.13381 -10.79658 -10.43242 -10.35523 -10.27413 -9.74852 -9.19426 -8.96226 -8.81565 -8.47645 -7.98448 -7.63821 -7.05498 -4.99795 1.00723 1.63981 1.95239 2.63801 3.54913 3.64095 3.85506 3.94325 4.18390 4.26692 4.55372 4.96977 5.08934 5.18527 5.28120 5.31265 5.37877 5.46437 5.58032 5.68698 5.74637 5.89140 5.98132 6.11289 6.21361 6.32533 6.34062 6.49858 7.07526 7.33797 7.63329 7.68766 8.03596 8.76631 8.85365 9.92442 10.27352 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.025632 B = 0.005710 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.116449 B = 4902.205836 C = 5739.853431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.061 3.939 3 Si 1.132 2.868 4 H -0.323 1.323 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.597 4.597 8 H 0.076 0.924 9 C 0.555 3.445 10 O -0.614 6.614 11 N -0.637 5.637 12 C 0.083 3.917 13 C 0.051 3.949 14 O -0.380 6.380 15 C 0.137 3.863 16 H 0.071 0.929 17 C -0.096 4.096 18 C -0.120 4.120 19 C -0.214 4.214 20 S 0.080 5.920 21 C -0.178 4.178 22 C 0.104 3.896 23 H 0.277 0.723 24 H 0.095 0.905 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.098 0.902 28 H 0.143 0.857 29 H 0.165 0.835 30 H 0.167 0.833 31 H 0.057 0.943 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.843 -15.284 -0.848 16.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.157 4.157 3 Si 0.966 3.034 4 H -0.254 1.254 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.632 4.632 8 H 0.094 0.906 9 C 0.366 3.634 10 O -0.507 6.507 11 N -0.372 5.372 12 C -0.041 4.041 13 C -0.026 4.026 14 O -0.300 6.300 15 C 0.076 3.924 16 H 0.089 0.911 17 C -0.109 4.109 18 C -0.150 4.150 19 C -0.349 4.349 20 S 0.343 5.657 21 C -0.314 4.314 22 C -0.021 4.021 23 H 0.088 0.912 24 H 0.113 0.887 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.116 0.884 28 H 0.161 0.839 29 H 0.182 0.818 30 H 0.184 0.816 31 H 0.075 0.925 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.997 -14.726 0.133 15.901 hybrid contribution -0.042 -0.575 -0.965 1.124 sum 5.955 -15.300 -0.832 16.440 Atomic orbital electron populations 1.70669 1.07574 1.31988 1.35386 1.27180 0.95327 1.04980 0.88254 0.82320 0.71283 0.70733 0.79104 1.25442 1.21593 1.21407 1.22112 0.90118 0.96367 1.54648 0.90570 1.18470 0.88833 0.80714 0.75390 1.90091 1.69198 1.30218 1.61235 1.47838 1.04175 1.06975 1.78199 1.21943 0.83377 1.00228 0.98574 1.22995 0.96714 0.84585 0.98351 1.87864 1.18318 1.33186 1.90583 1.21061 0.81337 0.90741 0.99279 0.91125 1.18630 0.98278 0.96788 0.97188 1.20042 0.97841 0.95460 1.01703 1.25494 1.06443 1.00281 1.02676 1.84166 1.30860 1.19276 1.31360 1.25463 1.05070 0.96879 1.03971 1.22180 0.98733 0.83710 0.97435 0.91173 0.88678 0.92621 0.92928 0.88386 0.83930 0.81796 0.81551 0.92509 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.58 13.65 55.55 0.76 -22.82 16 2 C 0.06 1.73 5.52 -17.37 -0.10 1.63 16 3 Si 1.13 29.86 25.83 -169.99 -4.39 25.46 16 4 H -0.32 -8.18 7.11 56.52 0.40 -7.77 16 5 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 6 H -0.29 -7.75 6.97 56.52 0.39 -7.36 16 7 C -0.60 -16.54 9.28 -35.63 -0.33 -16.87 16 8 H 0.08 2.05 5.94 -52.48 -0.31 1.74 16 9 C 0.55 14.77 7.50 -12.99 -0.10 14.68 16 10 O -0.61 -17.59 11.61 5.20 0.06 -17.53 16 11 N -0.64 -13.92 3.01 -173.67 -0.52 -14.45 16 12 C 0.08 1.51 6.62 -3.53 -0.02 1.48 16 13 C 0.05 0.77 6.99 37.31 0.26 1.03 16 14 O -0.38 -6.11 9.99 -35.23 -0.35 -6.47 16 15 C 0.14 2.22 3.09 -27.51 -0.08 2.14 16 16 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 17 C -0.10 -1.38 4.88 -106.24 -0.52 -1.89 16 18 C -0.12 -1.54 9.95 -41.21 -0.41 -1.95 16 19 C -0.21 -2.37 11.23 29.04 0.33 -2.05 16 20 S 0.08 0.89 23.34 -107.50 -2.51 -1.62 16 21 C -0.18 -2.33 10.57 29.04 0.31 -2.03 16 22 C 0.10 1.96 5.86 -3.31 -0.02 1.94 16 23 H 0.28 7.55 8.72 -40.82 -0.36 7.20 16 24 H 0.09 1.83 7.12 -51.93 -0.37 1.46 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.17 2.08 8.05 -52.49 -0.42 1.66 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.10 2.09 5.41 -51.93 -0.28 1.81 16 LS Contribution 282.08 15.07 4.25 4.25 Total: -1.00 -31.49 282.08 -6.89 -38.38 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: -3.50 Total: -3.32 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -0.69 Total: -1.89 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.23 Total: -37.27 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.29 Total: -24.00 kcal Atomic # 14 Polarization: 29.86 SS G_CDS: -4.39 Total: 25.46 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.51 Total: -1.62 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.49 -6.89 -38.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274720663.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.699 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds