Wall clock time and date at job start Mon Mar 30 2020 04:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86797 * 120.00222 * 2 1 4 4 H 1.48503 * 109.46888 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.47418 * 240.00539 * 3 2 1 6 6 H 1.48495 * 109.47220 * 120.00071 * 3 2 1 7 7 C 1.40047 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99863 * 6.00599 * 7 2 1 9 9 C 1.46374 * 120.00220 * 186.00553 * 7 2 1 10 10 O 1.21691 * 120.00132 * 352.55860 * 9 7 2 11 11 N 1.34772 * 120.00062 * 172.56186 * 9 7 2 12 12 C 1.47154 * 120.98377 * 174.94863 * 11 9 7 13 13 C 1.53297 * 108.38811 * 230.51254 * 12 11 9 14 14 O 1.42967 * 109.22281 * 307.69935 * 13 12 11 15 15 C 1.42959 * 114.16446 * 62.57454 * 14 13 12 16 16 H 1.08998 * 109.51720 * 57.35174 * 15 14 13 17 17 C 1.50702 * 109.51042 * 177.44756 * 15 14 13 18 18 C 1.38422 * 122.54343 * 219.74092 * 17 15 14 19 19 C 1.33390 * 114.92587 * 179.75830 * 18 17 15 20 20 S 1.75886 * 109.58893 * 0.47840 * 19 18 17 21 21 C 1.33399 * 122.53706 * 40.02603 * 17 15 14 22 22 C 1.47158 * 120.98326 * 354.66705 * 11 9 7 23 23 H 0.97004 * 120.00352 * 175.31795 * 1 2 3 24 24 H 1.09006 * 109.67842 * 350.23744 * 12 11 9 25 25 H 1.08995 * 109.68378 * 110.75032 * 12 11 9 26 26 H 1.09004 * 109.51230 * 67.61676 * 13 12 11 27 27 H 1.08994 * 109.51603 * 187.72080 * 13 12 11 28 28 H 1.07997 * 122.53515 * 359.97438 * 18 17 15 29 29 H 1.07999 * 125.21141 * 180.20423 * 19 18 17 30 30 H 1.07988 * 125.20140 * 359.97438 * 21 17 15 31 31 H 1.08997 * 109.68025 * 249.20955 * 22 11 9 32 32 H 1.09000 * 109.67815 * 9.76189 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2757 2.7464 0.0006 5 1 3.0945 1.6964 -1.2126 6 1 3.0945 1.6963 1.2124 7 6 2.0069 -1.2128 -0.0005 8 1 1.4714 -2.1455 -0.0988 9 6 3.4647 -1.2164 0.1321 10 8 4.0805 -0.1672 0.1066 11 7 4.1248 -2.3817 0.2823 12 6 5.5956 -2.4215 0.3071 13 6 6.0673 -3.4877 -0.6883 14 8 5.3942 -4.7187 -0.4136 15 6 3.9750 -4.6582 -0.5742 16 1 3.7366 -4.3402 -1.5891 17 6 3.3813 -6.0200 -0.3210 18 6 2.3428 -6.5323 -1.0795 19 6 1.9383 -7.7534 -0.7267 20 16 2.8874 -8.3164 0.6429 21 6 3.8130 -6.8208 0.6546 22 6 3.3960 -3.6513 0.4327 23 1 -0.4851 -0.8372 -0.0686 24 1 5.9940 -1.4486 0.0192 25 1 5.9391 -2.6767 1.3095 26 1 5.8366 -3.1654 -1.7037 27 1 7.1432 -3.6297 -0.5870 28 1 1.8965 -5.9861 -1.8973 29 1 1.1459 -8.3095 -1.2056 30 1 4.6093 -6.5868 1.3455 31 1 3.5219 -4.0289 1.4474 32 1 2.3371 -3.4932 0.2280 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274720663.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:12 Heat of formation + Delta-G solvation = -73.054286 kcal Electronic energy + Delta-G solvation = -18228.170154 eV Core-core repulsion = 15279.385285 eV Total energy + Delta-G solvation = -2948.784869 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.17525 -39.50287 -38.23944 -35.47999 -35.16771 -32.83737 -30.34071 -29.03590 -27.76208 -25.82920 -24.26276 -22.72353 -21.12059 -19.87953 -19.49149 -18.61586 -17.91817 -17.48710 -16.93203 -16.42778 -15.98866 -15.82462 -15.52368 -15.16247 -14.58530 -14.38316 -14.14948 -13.93323 -13.76542 -13.36707 -13.19275 -12.79890 -12.56017 -12.48286 -12.42988 -11.91977 -11.59786 -11.29700 -11.23060 -11.04497 -10.12787 -9.77152 -9.52449 -9.25119 -9.20120 -7.17002 0.05545 0.72780 1.02163 1.40823 1.51881 1.60872 1.93193 2.14907 2.28962 2.54855 2.68891 3.21323 3.75692 3.92014 3.93128 4.05741 4.16391 4.26653 4.36835 4.47369 4.52220 4.66414 4.71350 4.74355 4.90177 5.05995 5.24159 5.35087 5.48262 5.51909 5.73769 6.00264 6.06466 6.60386 6.87713 7.85453 8.08479 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.025632 B = 0.005710 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.116449 B = 4902.205836 C = 5739.853431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.031 3.969 3 Si 1.163 2.837 4 H -0.307 1.307 5 H -0.296 1.296 6 H -0.300 1.300 7 C -0.612 4.612 8 H 0.076 0.924 9 C 0.550 3.450 10 O -0.639 6.639 11 N -0.640 5.640 12 C 0.078 3.922 13 C 0.058 3.942 14 O -0.378 6.378 15 C 0.148 3.852 16 H 0.061 0.939 17 C -0.114 4.114 18 C -0.143 4.143 19 C -0.207 4.207 20 S 0.124 5.876 21 C -0.191 4.191 22 C 0.105 3.895 23 H 0.279 0.721 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.139 0.861 28 H 0.146 0.854 29 H 0.192 0.808 30 H 0.170 0.830 31 H 0.065 0.935 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.577 -17.221 -0.773 18.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.184 4.184 3 Si 0.995 3.005 4 H -0.237 1.237 5 H -0.224 1.224 6 H -0.228 1.228 7 C -0.648 4.648 8 H 0.094 0.906 9 C 0.359 3.641 10 O -0.534 6.534 11 N -0.373 5.373 12 C -0.045 4.045 13 C -0.019 4.019 14 O -0.297 6.297 15 C 0.087 3.913 16 H 0.079 0.921 17 C -0.127 4.127 18 C -0.173 4.173 19 C -0.342 4.342 20 S 0.388 5.612 21 C -0.327 4.327 22 C -0.019 4.019 23 H 0.089 0.911 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.156 0.844 28 H 0.163 0.837 29 H 0.209 0.791 30 H 0.188 0.812 31 H 0.084 0.916 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.729 -16.708 0.209 18.014 hybrid contribution -0.230 -0.111 -0.944 0.978 sum 6.499 -16.819 -0.735 18.046 Atomic orbital electron populations 1.70671 1.07705 1.32178 1.36523 1.27767 0.95714 1.06623 0.88325 0.81901 0.70585 0.70006 0.77987 1.23749 1.22431 1.22803 1.22287 0.91238 0.96341 1.54962 0.90597 1.18408 0.88743 0.81756 0.75236 1.90062 1.69674 1.31548 1.62147 1.47799 1.06085 1.06671 1.76730 1.22208 0.80857 1.00942 1.00530 1.23075 0.98665 0.83227 0.96958 1.87885 1.18056 1.33380 1.90415 1.20846 0.81449 0.91325 0.97690 0.92065 1.18576 0.99397 0.96151 0.98597 1.20129 0.98272 0.96488 1.02442 1.25882 1.06393 0.99674 1.02254 1.84046 1.29467 1.17206 1.30510 1.25633 1.05437 0.98010 1.03589 1.22270 0.97690 0.83056 0.98886 0.91067 0.89937 0.91065 0.93344 0.84372 0.83670 0.79094 0.81223 0.91639 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.12 13.65 21.84 0.30 -47.82 16 2 C 0.03 1.77 5.52 85.30 0.47 2.24 16 3 Si 1.16 61.04 25.83 68.60 1.77 62.81 16 4 H -0.31 -15.10 7.11 99.48 0.71 -14.39 16 5 H -0.30 -15.78 7.11 99.48 0.71 -15.08 16 6 H -0.30 -16.25 6.97 99.48 0.69 -15.55 16 7 C -0.61 -34.40 9.28 24.83 0.23 -34.17 16 8 H 0.08 4.18 5.94 -2.91 -0.02 4.16 16 9 C 0.55 29.49 7.50 86.36 0.65 30.14 16 10 O -0.64 -36.87 11.61 -4.32 -0.05 -36.92 16 11 N -0.64 -27.79 3.01 -821.61 -2.48 -30.26 16 12 C 0.08 2.72 6.62 86.35 0.57 3.30 16 13 C 0.06 1.62 6.99 72.08 0.50 2.12 16 14 O -0.38 -11.39 9.99 -148.98 -1.49 -12.88 16 15 C 0.15 4.68 3.09 30.09 0.09 4.77 16 16 H 0.06 2.04 8.09 -2.39 -0.02 2.02 16 17 C -0.11 -3.12 4.88 -20.92 -0.10 -3.22 16 18 C -0.14 -3.47 9.95 21.22 0.21 -3.26 16 19 C -0.21 -4.05 11.23 66.72 0.75 -3.30 16 20 S 0.12 2.39 23.34 -56.49 -1.32 1.07 16 21 C -0.19 -4.62 10.57 66.72 0.71 -3.92 16 22 C 0.10 3.91 5.86 86.49 0.51 4.42 16 23 H 0.28 15.31 8.72 -92.71 -0.81 14.50 16 24 H 0.08 3.12 7.12 -2.38 -0.02 3.11 16 25 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.05 1.41 8.14 -2.38 -0.02 1.40 16 27 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 29 H 0.19 2.59 8.06 -2.91 -0.02 2.56 16 30 H 0.17 3.89 8.05 -2.92 -0.02 3.87 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.08 3.48 5.41 -2.39 -0.01 3.47 16 Total: -1.00 -66.60 282.08 2.41 -64.19 By element: Atomic # 1 Polarization: -0.38 SS G_CDS: 1.08 Total: 0.70 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 4.59 Total: -0.88 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -2.18 Total: -78.09 kcal Atomic # 8 Polarization: -48.26 SS G_CDS: -1.54 Total: -49.80 kcal Atomic # 14 Polarization: 61.04 SS G_CDS: 1.77 Total: 62.81 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -1.32 Total: 1.07 kcal Total: -66.60 2.41 -64.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274720663.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.864 kcal (2) G-P(sol) polarization free energy of solvation -66.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds