Wall clock time and date at job start Mon Mar 30 2020 04:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00496 * 2 1 4 4 H 1.48498 * 109.46909 * 264.76565 * 3 2 1 5 5 H 1.48502 * 109.47066 * 24.76209 * 3 2 1 6 6 H 1.48493 * 109.47397 * 144.76551 * 3 2 1 7 7 C 1.37877 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00224 * 353.07292 * 7 2 1 9 9 C 1.50700 * 120.00340 * 173.07218 * 7 2 1 10 10 H 1.09003 * 109.47195 * 359.32144 * 9 7 2 11 11 C 1.50694 * 109.47536 * 119.31904 * 9 7 2 12 12 C 1.38242 * 119.99680 * 55.65505 * 11 9 7 13 13 C 1.38236 * 119.99968 * 179.80827 * 12 11 9 14 14 C 1.38241 * 119.99995 * 0.40260 * 13 12 11 15 15 C 1.38233 * 119.99579 * 359.85479 * 14 13 12 16 16 C 1.38235 * 120.00765 * 359.95494 * 15 14 13 17 17 S 1.81397 * 109.47290 * 239.32351 * 9 7 2 18 18 O 1.42098 * 109.47100 * 300.39445 * 17 9 7 19 19 C 1.81397 * 103.00069 * 56.78106 * 17 9 7 20 20 C 1.50702 * 109.47449 * 179.97438 * 19 17 9 21 21 N 1.34775 * 120.00528 * 180.02562 * 20 19 17 22 22 O 1.21286 * 119.99814 * 0.02562 * 20 19 17 23 23 H 0.97007 * 119.99146 * 0.02562 * 1 2 3 24 24 H 1.07998 * 119.99642 * 0.02562 * 12 11 9 25 25 H 1.07999 * 119.99773 * 180.23200 * 13 12 11 26 26 H 1.07994 * 120.00051 * 179.82878 * 14 13 12 27 27 H 1.08004 * 119.99535 * 179.97438 * 15 14 13 28 28 H 1.07986 * 120.00323 * 180.02562 * 16 15 14 29 29 H 1.08996 * 109.47739 * 300.00328 * 19 17 9 30 30 H 1.09005 * 109.47230 * 60.00374 * 19 17 9 31 31 H 0.97001 * 119.99813 * 359.97438 * 21 20 19 32 32 H 0.96996 * 120.00400 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6074 1.9824 -1.3942 5 1 1.3958 2.6821 0.5864 6 1 3.4871 1.4746 0.8077 7 6 2.0045 -1.1941 0.0005 8 1 1.4704 -2.1259 0.1137 9 6 3.5032 -1.1990 -0.1569 10 1 3.8601 -0.1752 -0.2694 11 6 4.1344 -1.8198 1.0626 12 6 3.7635 -3.0903 1.4619 13 6 4.3454 -3.6614 2.5782 14 6 5.2921 -2.9588 3.3001 15 6 5.6590 -1.6863 2.9038 16 6 5.0801 -1.1167 1.7853 17 16 3.9536 -2.1613 -1.6271 18 8 3.4804 -3.4935 -1.4846 19 6 3.0358 -1.3325 -2.9542 20 6 3.3102 -2.0259 -4.2638 21 7 2.7318 -1.5802 -5.3966 22 8 4.0515 -2.9852 -4.2983 23 1 -0.4849 0.8402 -0.0004 24 1 3.0217 -3.6380 0.8996 25 1 4.0584 -4.6554 2.8879 26 1 5.7447 -3.4038 4.1738 27 1 6.3983 -1.1372 3.4681 28 1 5.3671 -0.1228 1.4755 29 1 1.9683 -1.3729 -2.7380 30 1 3.3538 -0.2920 -3.0210 31 1 2.1386 -0.8132 -5.3689 32 1 2.9081 -2.0268 -6.2394 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304188395.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:55 Heat of formation + Delta-G solvation = -55.903249 kcal Electronic energy + Delta-G solvation = -18063.944456 eV Core-core repulsion = 15115.903311 eV Total energy + Delta-G solvation = -2948.041145 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.99331 -38.53002 -34.63733 -33.77722 -33.41124 -31.60078 -30.22369 -29.19857 -27.58193 -23.24649 -21.93249 -20.86614 -20.26946 -17.43848 -17.19688 -16.56350 -16.41602 -16.04438 -14.98738 -14.81885 -14.55966 -14.39824 -13.79719 -13.47104 -12.99534 -12.80710 -12.63157 -12.62813 -12.05608 -11.99937 -11.36371 -11.18107 -11.09653 -10.55945 -10.32587 -10.05578 -9.83074 -9.69907 -9.52241 -9.33728 -8.78051 -8.26249 -8.11407 -7.22844 -6.36152 -4.32610 1.93092 2.06924 2.59277 2.91266 3.01203 3.16553 3.17301 3.56989 3.89460 4.14194 4.53052 4.74261 5.00977 5.29095 5.48119 5.52160 5.64618 5.72457 5.88807 6.12939 6.19576 6.22471 6.33234 6.61238 6.77632 6.92512 7.06992 7.17647 7.25173 7.44521 7.46180 7.70086 8.14638 8.46640 8.69636 9.20932 10.75213 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.015674 B = 0.009212 C = 0.006709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.016149 B = 3038.879754 C = 4172.405253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.080 3.920 3 Si 0.865 3.135 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.257 1.257 7 C -0.507 4.507 8 H 0.084 0.916 9 C -0.260 4.260 10 H 0.090 0.910 11 C -0.028 4.028 12 C -0.102 4.102 13 C -0.124 4.124 14 C -0.143 4.143 15 C -0.127 4.127 16 C -0.129 4.129 17 S 1.249 4.751 18 O -0.833 6.833 19 C -0.482 4.482 20 C 0.547 3.453 21 N -0.856 5.856 22 O -0.544 6.544 23 H 0.269 0.731 24 H 0.129 0.871 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.402 0.598 32 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.755 2.987 -3.867 10.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.126 4.126 3 Si 0.691 3.309 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.181 1.181 7 C -0.546 4.546 8 H 0.102 0.898 9 C -0.378 4.378 10 H 0.108 0.892 11 C -0.030 4.030 12 C -0.120 4.120 13 C -0.142 4.142 14 C -0.161 4.161 15 C -0.145 4.145 16 C -0.148 4.148 17 S 1.448 4.552 18 O -0.828 6.828 19 C -0.618 4.618 20 C 0.332 3.668 21 N -0.420 5.420 22 O -0.421 6.421 23 H 0.079 0.921 24 H 0.147 0.853 25 H 0.130 0.870 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.134 0.866 29 H 0.151 0.849 30 H 0.149 0.851 31 H 0.231 0.769 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 10.663 1.699 -3.844 11.462 hybrid contribution -2.422 1.399 0.270 2.810 sum 8.241 3.098 -3.574 9.502 Atomic orbital electron populations 1.69888 1.06354 1.27513 1.48127 1.25122 0.94752 0.98884 0.93854 0.86995 0.80930 0.83648 0.79324 1.19360 1.21034 1.18138 1.20687 0.86110 0.95694 1.52137 0.89799 1.24687 1.02762 1.05341 1.04963 0.89180 1.19809 0.93088 0.93443 0.96691 1.21257 0.99064 0.95407 0.96304 1.21072 0.97511 0.99576 0.96038 1.20929 0.99513 0.95498 1.00193 1.20956 1.00514 0.95663 0.97360 1.21044 0.97834 0.99645 0.96310 1.70238 1.12074 0.85007 0.87871 1.93013 1.79324 1.26771 1.83722 1.27963 1.15954 1.10729 1.07107 1.19956 0.78703 0.82898 0.85232 1.43858 1.51677 1.36383 1.10095 1.90756 1.37309 1.27326 1.86719 0.92114 0.85303 0.86962 0.87154 0.86968 0.86579 0.84911 0.85093 0.76950 0.77278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.03 13.96 55.43 0.77 -24.25 16 2 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.86 18.74 26.95 -169.99 -4.58 14.16 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.26 -5.28 6.80 56.52 0.38 -4.89 16 7 C -0.51 -13.16 7.53 -34.44 -0.26 -13.42 16 8 H 0.08 2.53 7.75 -52.49 -0.41 2.13 16 9 C -0.26 -5.54 2.41 -29.04 -0.07 -5.61 16 10 H 0.09 1.74 4.52 -51.92 -0.23 1.51 16 11 C -0.03 -0.58 4.77 -104.62 -0.50 -1.08 16 12 C -0.10 -2.19 8.53 -39.58 -0.34 -2.52 16 13 C -0.12 -2.27 10.05 -39.58 -0.40 -2.67 16 14 C -0.14 -2.32 10.05 -39.58 -0.40 -2.72 16 15 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 16 C -0.13 -2.34 9.67 -39.58 -0.38 -2.72 16 17 S 1.25 24.44 11.79 -107.50 -1.27 23.17 16 18 O -0.83 -20.93 16.37 -36.27 -0.59 -21.52 16 19 C -0.48 -8.40 6.04 36.01 0.22 -8.18 16 20 C 0.55 9.24 8.12 -10.99 -0.09 9.15 16 21 N -0.86 -10.24 8.87 31.22 0.28 -9.97 16 22 O -0.54 -11.09 16.54 4.51 0.07 -11.02 16 23 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.13 3.09 6.74 -52.49 -0.35 2.73 16 25 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 26 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 27 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 28 H 0.12 1.87 7.95 -52.49 -0.42 1.45 16 29 H 0.13 2.64 7.71 -51.93 -0.40 2.24 16 30 H 0.13 1.81 8.14 -51.92 -0.42 1.39 16 31 H 0.40 3.77 8.83 -40.82 -0.36 3.41 16 32 H 0.40 3.98 8.93 -40.82 -0.36 3.62 16 LS Contribution 291.21 15.07 4.39 4.39 Total: -1.00 -35.27 291.21 -7.02 -42.29 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -3.38 Total: 12.99 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: -2.71 Total: -30.24 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 1.05 Total: -34.22 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.52 Total: -32.54 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -4.58 Total: 14.16 kcal Atomic # 16 Polarization: 24.44 SS G_CDS: -1.27 Total: 23.17 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -35.27 -7.02 -42.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304188395.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.610 kcal (2) G-P(sol) polarization free energy of solvation -35.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds