Wall clock time and date at job start Mon Mar 30 2020 04:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00496 * 2 1 4 4 H 1.48498 * 109.46909 * 264.76565 * 3 2 1 5 5 H 1.48502 * 109.47066 * 24.76209 * 3 2 1 6 6 H 1.48493 * 109.47397 * 144.76551 * 3 2 1 7 7 C 1.37877 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00224 * 353.07292 * 7 2 1 9 9 C 1.50700 * 120.00340 * 173.07218 * 7 2 1 10 10 H 1.09003 * 109.47195 * 359.32144 * 9 7 2 11 11 C 1.50694 * 109.47536 * 119.31904 * 9 7 2 12 12 C 1.38242 * 119.99680 * 55.65505 * 11 9 7 13 13 C 1.38236 * 119.99968 * 179.80827 * 12 11 9 14 14 C 1.38241 * 119.99995 * 0.40260 * 13 12 11 15 15 C 1.38233 * 119.99579 * 359.85479 * 14 13 12 16 16 C 1.38235 * 120.00765 * 359.95494 * 15 14 13 17 17 S 1.81397 * 109.47290 * 239.32351 * 9 7 2 18 18 O 1.42098 * 109.47100 * 300.39445 * 17 9 7 19 19 C 1.81397 * 103.00069 * 56.78106 * 17 9 7 20 20 C 1.50702 * 109.47449 * 179.97438 * 19 17 9 21 21 N 1.34775 * 120.00528 * 180.02562 * 20 19 17 22 22 O 1.21286 * 119.99814 * 0.02562 * 20 19 17 23 23 H 0.97007 * 119.99146 * 0.02562 * 1 2 3 24 24 H 1.07998 * 119.99642 * 0.02562 * 12 11 9 25 25 H 1.07999 * 119.99773 * 180.23200 * 13 12 11 26 26 H 1.07994 * 120.00051 * 179.82878 * 14 13 12 27 27 H 1.08004 * 119.99535 * 179.97438 * 15 14 13 28 28 H 1.07986 * 120.00323 * 180.02562 * 16 15 14 29 29 H 1.08996 * 109.47739 * 300.00328 * 19 17 9 30 30 H 1.09005 * 109.47230 * 60.00374 * 19 17 9 31 31 H 0.97001 * 119.99813 * 359.97438 * 21 20 19 32 32 H 0.96996 * 120.00400 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6074 1.9824 -1.3942 5 1 1.3958 2.6821 0.5864 6 1 3.4871 1.4746 0.8077 7 6 2.0045 -1.1941 0.0005 8 1 1.4704 -2.1259 0.1137 9 6 3.5032 -1.1990 -0.1569 10 1 3.8601 -0.1752 -0.2694 11 6 4.1344 -1.8198 1.0626 12 6 3.7635 -3.0903 1.4619 13 6 4.3454 -3.6614 2.5782 14 6 5.2921 -2.9588 3.3001 15 6 5.6590 -1.6863 2.9038 16 6 5.0801 -1.1167 1.7853 17 16 3.9536 -2.1613 -1.6271 18 8 3.4804 -3.4935 -1.4846 19 6 3.0358 -1.3325 -2.9542 20 6 3.3102 -2.0259 -4.2638 21 7 2.7318 -1.5802 -5.3966 22 8 4.0515 -2.9852 -4.2983 23 1 -0.4849 0.8402 -0.0004 24 1 3.0217 -3.6380 0.8996 25 1 4.0584 -4.6554 2.8879 26 1 5.7447 -3.4038 4.1738 27 1 6.3983 -1.1372 3.4681 28 1 5.3671 -0.1228 1.4755 29 1 1.9683 -1.3729 -2.7380 30 1 3.3538 -0.2920 -3.0210 31 1 2.1386 -0.8132 -5.3689 32 1 2.9081 -2.0268 -6.2394 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304188395.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:54 Heat of formation + Delta-G solvation = -85.039803 kcal Electronic energy + Delta-G solvation = -18065.207912 eV Core-core repulsion = 15115.903311 eV Total energy + Delta-G solvation = -2949.304600 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.37860 -39.96032 -36.47380 -35.56772 -34.69394 -33.33720 -31.63262 -30.65767 -29.24004 -25.03899 -23.36167 -22.27933 -21.69262 -19.12829 -18.75446 -17.96455 -17.89039 -17.52041 -16.58965 -16.32558 -16.04753 -15.95449 -15.30141 -15.01882 -14.69206 -14.40424 -14.17069 -14.07661 -13.62769 -13.49741 -13.06069 -12.79536 -12.67753 -12.03275 -11.93372 -11.78263 -11.54643 -11.24828 -11.05463 -10.70970 -10.66156 -9.67984 -9.64101 -8.89251 -8.35022 -6.39039 0.47478 0.63997 1.08274 1.35000 1.43622 1.53306 1.54832 1.98776 2.33618 2.64694 3.04242 3.11491 3.16702 4.03154 4.10555 4.17637 4.30862 4.34395 4.44505 4.56067 4.71347 4.82256 4.89391 5.15023 5.31203 5.43359 5.70764 5.74776 5.86236 5.90705 6.13225 6.30176 6.34130 6.58970 7.18752 7.27970 8.81152 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.015674 B = 0.009212 C = 0.006709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.016149 B = 3038.879754 C = 4172.405253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.021 3.979 3 Si 0.927 3.073 4 H -0.222 1.222 5 H -0.296 1.296 6 H -0.228 1.228 7 C -0.510 4.510 8 H 0.011 0.989 9 C -0.261 4.261 10 H 0.120 0.880 11 C -0.057 4.057 12 C -0.139 4.139 13 C -0.135 4.135 14 C -0.133 4.133 15 C -0.116 4.116 16 C -0.131 4.131 17 S 1.297 4.703 18 O -0.901 6.901 19 C -0.479 4.479 20 C 0.544 3.456 21 N -0.828 5.828 22 O -0.584 6.584 23 H 0.270 0.730 24 H 0.079 0.921 25 H 0.124 0.876 26 H 0.151 0.849 27 H 0.159 0.841 28 H 0.147 0.853 29 H 0.107 0.893 30 H 0.179 0.821 31 H 0.419 0.581 32 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.093 6.107 -3.679 14.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.179 4.179 3 Si 0.747 3.253 4 H -0.145 1.145 5 H -0.223 1.223 6 H -0.151 1.151 7 C -0.549 4.549 8 H 0.030 0.970 9 C -0.378 4.378 10 H 0.138 0.862 11 C -0.059 4.059 12 C -0.158 4.158 13 C -0.153 4.153 14 C -0.152 4.152 15 C -0.134 4.134 16 C -0.150 4.150 17 S 1.498 4.502 18 O -0.897 6.897 19 C -0.617 4.617 20 C 0.329 3.671 21 N -0.393 5.393 22 O -0.465 6.465 23 H 0.079 0.921 24 H 0.098 0.902 25 H 0.142 0.858 26 H 0.168 0.832 27 H 0.176 0.824 28 H 0.164 0.836 29 H 0.126 0.874 30 H 0.196 0.804 31 H 0.250 0.750 32 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 13.997 4.811 -3.677 15.250 hybrid contribution -3.520 0.338 0.201 3.542 sum 10.477 5.149 -3.476 12.180 Atomic orbital electron populations 1.70082 1.08933 1.28713 1.50465 1.26146 0.95462 1.03414 0.92860 0.86007 0.80012 0.76924 0.82328 1.14505 1.22270 1.15129 1.20561 0.88806 0.93115 1.52438 0.97023 1.24712 0.99385 1.07280 1.06449 0.86191 1.19840 0.95128 0.93617 0.97300 1.21097 0.99959 0.96586 0.98129 1.21296 0.98141 1.00520 0.95366 1.21392 0.97797 0.95522 1.00444 1.21502 1.00089 0.95450 0.96360 1.21408 0.96695 1.00591 0.96324 1.69215 1.11289 0.82894 0.86783 1.92918 1.81061 1.30889 1.84799 1.27855 1.13851 1.13259 1.06704 1.19840 0.78807 0.82451 0.86050 1.43577 1.50225 1.36257 1.09238 1.90754 1.39512 1.28977 1.87298 0.92112 0.90228 0.85840 0.83174 0.82356 0.83576 0.87443 0.80357 0.75014 0.75636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.11 13.96 21.45 0.30 -55.82 16 2 C 0.02 1.12 5.47 84.66 0.46 1.58 16 3 Si 0.93 36.51 26.95 68.60 1.85 38.36 16 4 H -0.22 -7.16 7.11 99.48 0.71 -6.45 16 5 H -0.30 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.23 -7.92 6.80 99.48 0.68 -7.24 16 7 C -0.51 -27.96 7.53 25.60 0.19 -27.76 16 8 H 0.01 0.77 7.75 -2.91 -0.02 0.75 16 9 C -0.26 -11.14 2.41 29.10 0.07 -11.07 16 10 H 0.12 4.26 4.52 -2.39 -0.01 4.25 16 11 C -0.06 -2.37 4.77 -19.87 -0.09 -2.47 16 12 C -0.14 -6.33 8.53 22.27 0.19 -6.14 16 13 C -0.14 -4.99 10.05 22.27 0.22 -4.77 16 14 C -0.13 -3.90 10.05 22.27 0.22 -3.67 16 15 C -0.12 -3.21 10.05 22.27 0.22 -2.99 16 16 C -0.13 -4.31 9.67 22.27 0.22 -4.09 16 17 S 1.30 51.90 11.79 -56.49 -0.67 51.23 16 18 O -0.90 -48.70 16.37 -147.99 -2.42 -51.12 16 19 C -0.48 -16.28 6.04 71.24 0.43 -15.85 16 20 C 0.54 17.85 8.12 87.66 0.71 18.56 16 21 N -0.83 -17.96 8.87 -173.53 -1.54 -19.50 16 22 O -0.58 -23.89 16.54 -2.06 -0.03 -23.92 16 23 H 0.27 14.87 8.31 -92.70 -0.77 14.10 16 24 H 0.08 4.32 6.74 -2.91 -0.02 4.31 16 25 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 26 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 27 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 28 H 0.15 3.86 7.95 -2.92 -0.02 3.83 16 29 H 0.11 4.36 7.71 -2.39 -0.02 4.34 16 30 H 0.18 4.24 8.14 -2.39 -0.02 4.22 16 31 H 0.42 6.62 8.83 -92.71 -0.82 5.81 16 32 H 0.41 7.28 8.93 -92.71 -0.83 6.45 16 Total: -1.00 -86.27 291.21 -0.18 -86.44 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: -0.51 Total: 32.99 kcal Atomic # 6 Polarization: -61.51 SS G_CDS: 2.85 Total: -58.66 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -1.24 Total: -75.32 kcal Atomic # 8 Polarization: -72.59 SS G_CDS: -2.46 Total: -75.05 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 1.85 Total: 38.36 kcal Atomic # 16 Polarization: 51.90 SS G_CDS: -0.67 Total: 51.23 kcal Total: -86.27 -0.18 -86.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304188395.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.402 kcal (2) G-P(sol) polarization free energy of solvation -86.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds