Wall clock time and date at job start Mon Mar 30 2020 05:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47386 * 2 1 4 4 S 1.81397 * 109.47417 * 120.00299 * 2 1 3 5 5 C 1.76202 * 102.99779 * 292.59093 * 4 2 1 6 6 C 1.38918 * 120.00411 * 275.20860 * 5 4 2 7 7 C 1.38071 * 119.99344 * 179.97438 * 6 5 4 8 8 C 1.38877 * 120.00481 * 0.02660 * 7 6 5 9 9 N 1.40005 * 119.99155 * 179.97438 * 8 7 6 10 10 C 1.38862 * 120.01238 * 0.23166 * 8 7 6 11 11 C 1.38079 * 120.00429 * 359.48862 * 10 8 7 12 12 C 1.50706 * 109.47253 * 240.00515 * 2 1 3 13 13 O 1.21216 * 119.99470 * 264.99970 * 12 2 1 14 14 O 1.34303 * 120.00211 * 84.99764 * 12 2 1 15 15 C 1.34928 * 117.00160 * 180.02562 * 14 12 2 16 16 H 1.08001 * 119.99574 * 0.02562 * 15 14 12 17 17 C 1.38756 * 119.99858 * 179.97438 * 15 14 12 18 18 N 1.31438 * 119.99532 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00274 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.46996 * 90.00041 * 19 17 15 21 21 H 1.48503 * 109.46977 * 209.99871 * 19 17 15 22 22 H 1.48497 * 109.47038 * 329.99741 * 19 17 15 23 23 H 1.09001 * 109.47303 * 305.93328 * 1 2 3 24 24 H 1.09000 * 109.47284 * 65.93464 * 1 2 3 25 25 H 1.08998 * 109.47126 * 185.92997 * 1 2 3 26 26 H 1.07998 * 120.00279 * 359.96140 * 6 5 4 27 27 H 1.07997 * 119.99821 * 179.97438 * 7 6 5 28 28 H 0.97001 * 120.00057 * 359.97438 * 9 8 7 29 29 H 0.97000 * 119.99478 * 179.72741 * 9 8 7 30 30 H 1.08005 * 120.00043 * 179.74832 * 10 8 7 31 31 H 1.08006 * 120.00352 * 180.25613 * 11 10 8 32 32 H 0.97003 * 120.00303 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1347 -0.8552 1.4810 5 6 1.6450 0.2208 2.7877 6 6 2.4504 1.2962 3.1408 7 6 2.0662 2.1394 4.1643 8 6 0.8750 1.9123 4.8411 9 7 0.4860 2.7673 5.8793 10 6 0.0724 0.8343 4.4919 11 6 0.4533 -0.0060 3.4646 12 6 2.0323 -0.7103 -1.2306 13 8 2.3206 -1.8864 -1.1761 14 8 2.1606 -0.0403 -2.3874 15 6 2.6150 -0.7354 -3.4508 16 1 2.8568 -1.7830 -3.3478 17 6 2.7708 -0.1046 -4.6769 18 7 3.2140 -0.7817 -5.7126 19 14 2.3519 1.7071 -4.8551 20 1 3.5563 2.5247 -4.5616 21 1 1.8974 1.9758 -6.2431 22 1 1.2691 2.0608 -3.9024 23 1 -0.3634 0.6031 0.8321 24 1 -0.3634 0.4191 -0.9383 25 1 -0.3633 -1.0221 0.1062 26 1 3.3771 1.4724 2.6148 27 1 2.6925 2.9752 4.4391 28 1 1.0486 3.5179 6.1261 29 1 -0.3480 2.6110 6.3495 30 1 -0.8520 0.6555 5.0211 31 1 -0.1730 -0.8420 3.1902 32 1 3.3225 -0.3409 -6.5699 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309265369.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:04 Heat of formation + Delta-G solvation = -52.772915 kcal Electronic energy + Delta-G solvation = -17178.694350 eV Core-core repulsion = 14230.788947 eV Total energy + Delta-G solvation = -2947.905403 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.34683 -39.20266 -35.44876 -34.71979 -32.79022 -32.19946 -31.08429 -28.76898 -25.91754 -23.93203 -22.92899 -22.32607 -20.02932 -18.01693 -17.78898 -17.09211 -17.02574 -16.51349 -15.19320 -14.85559 -14.72843 -14.33783 -14.12141 -13.77983 -13.52836 -13.47293 -12.96551 -12.61433 -12.43030 -12.15528 -11.59758 -11.35468 -11.23961 -11.18109 -10.97187 -10.46772 -10.36252 -9.73194 -9.61868 -9.16515 -9.09070 -8.67418 -7.80503 -7.40971 -6.36020 -4.11803 1.03860 1.29697 1.94661 2.84422 3.14814 3.24887 3.36527 3.41392 3.52452 3.72032 4.10725 4.25568 4.71233 4.82603 5.05848 5.27364 5.29319 5.34183 5.36136 5.50030 5.75122 5.89223 5.95337 6.03406 6.06575 6.29162 6.32978 6.39781 6.60172 7.13596 7.39368 7.72535 8.04430 8.60746 9.01682 9.67193 10.72392 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.033018 B = 0.004354 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.816468 B = 6429.910357 C = 6835.388827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.069 4.069 3 H 0.106 0.894 4 S -0.084 6.084 5 C -0.183 4.183 6 C -0.023 4.023 7 C -0.207 4.207 8 C 0.233 3.767 9 N -0.878 5.878 10 C -0.208 4.208 11 C -0.019 4.019 12 C 0.429 3.571 13 O -0.521 6.521 14 O -0.246 6.246 15 C -0.381 4.381 16 H 0.111 0.889 17 C 0.067 3.933 18 N -0.873 5.873 19 Si 0.903 3.097 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.260 1.260 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.131 0.869 27 H 0.123 0.877 28 H 0.398 0.602 29 H 0.398 0.602 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.881 9.257 21.372 24.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.198 4.198 3 H 0.124 0.876 4 S 0.150 5.850 5 C -0.296 4.296 6 C -0.044 4.044 7 C -0.231 4.231 8 C 0.128 3.872 9 N -0.417 5.417 10 C -0.233 4.233 11 C -0.040 4.040 12 C 0.273 3.727 13 O -0.414 6.414 14 O -0.155 6.155 15 C -0.457 4.457 16 H 0.128 0.872 17 C -0.137 4.137 18 N -0.513 5.513 19 Si 0.729 3.271 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.184 1.184 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.149 0.851 27 H 0.141 0.859 28 H 0.226 0.774 29 H 0.226 0.774 30 H 0.141 0.859 31 H 0.150 0.850 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.161 7.923 21.130 23.393 hybrid contribution -0.852 2.284 0.008 2.437 sum -7.012 10.207 21.138 24.498 Atomic orbital electron populations 1.21971 0.91165 1.03603 1.02948 1.22945 1.00432 1.02900 0.93510 0.87556 1.86063 1.75717 1.28867 0.94382 1.21687 0.99998 1.03159 1.04782 1.21435 0.97803 0.91356 0.93856 1.20612 0.97758 1.03579 1.01179 1.17951 0.92620 0.89344 0.87276 1.42624 1.27457 1.32877 1.38693 1.20610 1.01871 0.97862 1.02926 1.21375 0.93714 0.96620 0.92294 1.21887 0.80252 0.86169 0.84423 1.90633 1.49072 1.16773 1.84965 1.83502 1.71524 1.42801 1.17677 1.20680 1.43047 0.96972 0.84954 0.87151 1.24524 0.95664 0.99827 0.93660 1.69604 1.43484 1.37186 1.00999 0.86242 0.79768 0.83438 0.77671 1.19800 1.20697 1.18422 0.91682 0.90919 0.90808 0.85091 0.85930 0.77365 0.77382 0.85935 0.85036 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.04 37.15 0.34 -1.81 16 2 C -0.07 -1.27 3.24 -27.88 -0.09 -1.36 16 3 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 4 S -0.08 -1.43 20.39 -107.50 -2.19 -3.63 16 5 C -0.18 -2.49 5.31 -39.08 -0.21 -2.69 16 6 C -0.02 -0.28 9.78 -39.39 -0.39 -0.67 16 7 C -0.21 -2.11 9.89 -39.41 -0.39 -2.50 16 8 C 0.23 2.18 6.76 -83.66 -0.57 1.62 16 9 N -0.88 -5.24 9.10 32.46 0.30 -4.94 16 10 C -0.21 -2.05 9.89 -39.41 -0.39 -2.44 16 11 C -0.02 -0.22 9.45 -39.39 -0.37 -0.59 16 12 C 0.43 10.49 7.03 36.01 0.25 10.74 16 13 O -0.52 -14.32 15.38 -19.06 -0.29 -14.61 16 14 O -0.25 -6.65 8.58 -20.71 -0.18 -6.83 16 15 C -0.38 -11.50 10.10 30.92 0.31 -11.19 16 16 H 0.11 3.67 7.09 -52.49 -0.37 3.30 16 17 C 0.07 1.94 5.49 -17.53 -0.10 1.85 16 18 N -0.87 -26.11 13.96 55.48 0.77 -25.34 16 19 Si 0.90 21.55 28.62 -169.99 -4.86 16.69 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 23 H 0.06 0.84 7.57 -51.93 -0.39 0.45 16 24 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 25 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 26 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 27 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 28 H 0.40 1.72 8.84 -40.82 -0.36 1.36 16 29 H 0.40 1.67 8.84 -40.82 -0.36 1.31 16 30 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 31 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 32 H 0.28 7.61 8.31 -40.82 -0.34 7.28 16 LS Contribution 300.63 15.07 4.53 4.53 Total: -1.00 -34.02 300.63 -7.10 -41.12 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -3.58 Total: 2.04 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -1.60 Total: -9.04 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: 1.07 Total: -30.28 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.47 Total: -21.44 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.86 Total: 16.69 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.19 Total: -3.63 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.02 -7.10 -41.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309265369.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.648 kcal (2) G-P(sol) polarization free energy of solvation -34.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds