Wall clock time and date at job start Mon Mar 30 2020 05:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47386 * 2 1 4 4 S 1.81397 * 109.47417 * 120.00299 * 2 1 3 5 5 C 1.76202 * 102.99779 * 292.59093 * 4 2 1 6 6 C 1.38918 * 120.00411 * 275.20860 * 5 4 2 7 7 C 1.38071 * 119.99344 * 179.97438 * 6 5 4 8 8 C 1.38877 * 120.00481 * 0.02660 * 7 6 5 9 9 N 1.40005 * 119.99155 * 179.97438 * 8 7 6 10 10 C 1.38862 * 120.01238 * 0.23166 * 8 7 6 11 11 C 1.38079 * 120.00429 * 359.48862 * 10 8 7 12 12 C 1.50706 * 109.47253 * 240.00515 * 2 1 3 13 13 O 1.21216 * 119.99470 * 264.99970 * 12 2 1 14 14 O 1.34303 * 120.00211 * 84.99764 * 12 2 1 15 15 C 1.34928 * 117.00160 * 180.02562 * 14 12 2 16 16 H 1.08001 * 119.99574 * 0.02562 * 15 14 12 17 17 C 1.38756 * 119.99858 * 179.97438 * 15 14 12 18 18 N 1.31438 * 119.99532 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00274 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.46996 * 90.00041 * 19 17 15 21 21 H 1.48503 * 109.46977 * 209.99871 * 19 17 15 22 22 H 1.48497 * 109.47038 * 329.99741 * 19 17 15 23 23 H 1.09001 * 109.47303 * 305.93328 * 1 2 3 24 24 H 1.09000 * 109.47284 * 65.93464 * 1 2 3 25 25 H 1.08998 * 109.47126 * 185.92997 * 1 2 3 26 26 H 1.07998 * 120.00279 * 359.96140 * 6 5 4 27 27 H 1.07997 * 119.99821 * 179.97438 * 7 6 5 28 28 H 0.97001 * 120.00057 * 359.97438 * 9 8 7 29 29 H 0.97000 * 119.99478 * 179.72741 * 9 8 7 30 30 H 1.08005 * 120.00043 * 179.74832 * 10 8 7 31 31 H 1.08006 * 120.00352 * 180.25613 * 11 10 8 32 32 H 0.97003 * 120.00303 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1347 -0.8552 1.4810 5 6 1.6450 0.2208 2.7877 6 6 2.4504 1.2962 3.1408 7 6 2.0662 2.1394 4.1643 8 6 0.8750 1.9123 4.8411 9 7 0.4860 2.7673 5.8793 10 6 0.0724 0.8343 4.4919 11 6 0.4533 -0.0060 3.4646 12 6 2.0323 -0.7103 -1.2306 13 8 2.3206 -1.8864 -1.1761 14 8 2.1606 -0.0403 -2.3874 15 6 2.6150 -0.7354 -3.4508 16 1 2.8568 -1.7830 -3.3478 17 6 2.7708 -0.1046 -4.6769 18 7 3.2140 -0.7817 -5.7126 19 14 2.3519 1.7071 -4.8551 20 1 3.5563 2.5247 -4.5616 21 1 1.8974 1.9758 -6.2431 22 1 1.2691 2.0608 -3.9024 23 1 -0.3634 0.6031 0.8321 24 1 -0.3634 0.4191 -0.9383 25 1 -0.3633 -1.0221 0.1062 26 1 3.3771 1.4724 2.6148 27 1 2.6925 2.9752 4.4391 28 1 1.0486 3.5179 6.1261 29 1 -0.3480 2.6110 6.3495 30 1 -0.8520 0.6555 5.0211 31 1 -0.1730 -0.8420 3.1902 32 1 3.3225 -0.3409 -6.5699 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309265369.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:03 Heat of formation + Delta-G solvation = -75.308986 kcal Electronic energy + Delta-G solvation = -17179.671588 eV Core-core repulsion = 14230.788947 eV Total energy + Delta-G solvation = -2948.882640 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.25370 -40.12713 -37.54298 -35.43208 -34.62376 -34.09370 -31.88864 -29.52724 -27.98185 -25.57320 -23.74569 -23.16271 -21.89363 -20.21662 -19.05742 -18.40295 -17.75394 -17.67353 -16.98790 -16.68315 -16.26258 -15.65944 -15.12666 -15.00196 -14.63428 -14.39036 -14.30254 -14.19525 -14.11732 -13.68115 -13.16276 -12.99725 -12.51853 -12.42437 -12.27884 -12.01517 -11.89136 -11.83802 -11.15777 -10.86282 -10.78583 -9.91537 -8.79403 -8.57227 -8.48668 -6.45069 -0.00843 0.49515 0.80131 1.24489 1.32859 1.49680 1.54297 1.70655 2.24795 2.34089 2.87343 2.88263 2.97149 3.82390 3.94016 3.95381 4.10224 4.22986 4.48274 4.57568 4.62907 4.70433 4.74563 5.05615 5.11203 5.26594 5.30997 5.43561 5.55498 5.82850 5.84793 6.45166 6.52276 6.77864 6.97762 7.50368 8.55763 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.033018 B = 0.004354 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.816468 B = 6429.910357 C = 6835.388827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.062 4.062 3 H 0.123 0.877 4 S -0.127 6.127 5 C -0.197 4.197 6 C -0.033 4.033 7 C -0.210 4.210 8 C 0.242 3.758 9 N -0.861 5.861 10 C -0.208 4.208 11 C -0.023 4.023 12 C 0.429 3.571 13 O -0.558 6.558 14 O -0.250 6.250 15 C -0.411 4.411 16 H 0.057 0.943 17 C 0.018 3.982 18 N -0.915 5.915 19 Si 0.983 3.017 20 H -0.259 1.259 21 H -0.262 1.262 22 H -0.249 1.249 23 H 0.098 0.902 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.128 0.872 27 H 0.145 0.855 28 H 0.409 0.591 29 H 0.410 0.590 30 H 0.149 0.851 31 H 0.136 0.864 32 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.506 12.717 23.781 28.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.190 4.190 3 H 0.141 0.859 4 S 0.106 5.894 5 C -0.311 4.311 6 C -0.055 4.055 7 C -0.234 4.234 8 C 0.134 3.866 9 N -0.399 5.399 10 C -0.233 4.233 11 C -0.045 4.045 12 C 0.274 3.726 13 O -0.453 6.453 14 O -0.159 6.159 15 C -0.487 4.487 16 H 0.075 0.925 17 C -0.182 4.182 18 N -0.554 5.554 19 Si 0.802 3.198 20 H -0.183 1.183 21 H -0.187 1.187 22 H -0.173 1.173 23 H 0.117 0.883 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.146 0.854 27 H 0.162 0.838 28 H 0.239 0.761 29 H 0.240 0.760 30 H 0.166 0.834 31 H 0.153 0.847 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.795 11.382 23.569 27.309 hybrid contribution -0.349 1.161 -0.495 1.309 sum -8.143 12.543 23.074 27.496 Atomic orbital electron populations 1.21962 0.88684 1.04029 1.04220 1.23023 1.02221 1.02780 0.90963 0.85851 1.86228 1.76467 1.30968 0.95712 1.21455 1.01789 1.03814 1.04066 1.21481 0.97740 0.91482 0.94767 1.20809 0.98407 1.03705 1.00505 1.18077 0.91987 0.89257 0.87278 1.42640 1.27927 1.32188 1.37178 1.20847 1.02794 0.97341 1.02309 1.21451 0.93091 0.97176 0.92733 1.23252 0.78058 0.86150 0.85151 1.90609 1.50223 1.18859 1.85608 1.83510 1.72159 1.42431 1.17816 1.20351 1.45836 0.95422 0.87105 0.92476 1.25581 0.94499 1.05706 0.92421 1.69700 1.43871 1.39904 1.01933 0.85092 0.80230 0.75754 0.78742 1.18312 1.18653 1.17268 0.88341 0.91092 0.91326 0.85393 0.83759 0.76077 0.75985 0.83365 0.84662 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 9.04 71.98 0.65 -3.25 16 2 C -0.06 -2.27 3.24 29.85 0.10 -2.17 16 3 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 4 S -0.13 -4.43 20.39 -56.49 -1.15 -5.58 16 5 C -0.20 -5.11 5.31 22.60 0.12 -4.99 16 6 C -0.03 -0.75 9.78 22.39 0.22 -0.53 16 7 C -0.21 -3.60 9.89 22.38 0.22 -3.37 16 8 C 0.24 3.57 6.76 38.14 0.26 3.82 16 9 N -0.86 -6.35 9.10 -51.21 -0.47 -6.82 16 10 C -0.21 -3.34 9.89 22.38 0.22 -3.12 16 11 C -0.02 -0.49 9.45 22.39 0.21 -0.28 16 12 C 0.43 21.71 7.03 71.24 0.50 22.21 16 13 O -0.56 -32.52 15.38 20.76 0.32 -32.20 16 14 O -0.25 -13.86 8.58 14.86 0.13 -13.73 16 15 C -0.41 -26.08 10.10 67.94 0.69 -25.39 16 16 H 0.06 4.12 7.09 -2.91 -0.02 4.10 16 17 C 0.02 1.08 5.49 84.88 0.47 1.55 16 18 N -0.91 -56.13 13.96 21.62 0.30 -55.83 16 19 Si 0.98 43.99 28.62 68.60 1.96 45.95 16 20 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 21 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 22 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 23 H 0.10 2.30 7.57 -2.39 -0.02 2.28 16 24 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 27 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 28 H 0.41 1.66 8.84 -92.71 -0.82 0.84 16 29 H 0.41 1.50 8.84 -92.71 -0.82 0.68 16 30 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 31 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 32 H 0.29 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -78.11 300.63 4.27 -73.85 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -0.48 Total: 9.88 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 3.65 Total: -15.53 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: -0.16 Total: -62.65 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: 0.45 Total: -45.93 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.96 Total: 45.95 kcal Atomic # 16 Polarization: -4.43 SS G_CDS: -1.15 Total: -5.58 kcal Total: -78.11 4.27 -73.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309265369.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.462 kcal (2) G-P(sol) polarization free energy of solvation -78.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds