Wall clock time and date at job start Mon Mar 30 2020 04:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86799 * 120.00449 * 2 1 4 4 H 1.48501 * 109.46711 * 269.99846 * 3 2 1 5 5 H 1.48503 * 109.47103 * 29.99597 * 3 2 1 6 6 H 1.48496 * 109.47286 * 149.99323 * 3 2 1 7 7 C 1.40073 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00061 * 180.02562 * 7 2 1 9 9 C 1.39915 * 119.99866 * 0.02562 * 7 2 1 10 10 C 1.38281 * 125.40766 * 179.97438 * 9 7 2 11 11 C 1.36805 * 114.20061 * 180.02562 * 10 9 7 12 12 C 1.50698 * 122.32858 * 180.02562 * 11 10 9 13 13 H 1.09004 * 110.46136 * 22.41259 * 12 11 10 14 14 C 1.54381 * 110.41376 * 260.00083 * 12 11 10 15 15 C 1.54257 * 105.14978 * 217.42278 * 14 12 11 16 16 C 1.54377 * 105.06382 * 359.94367 * 15 14 12 17 17 H 1.09004 * 110.41760 * 264.96131 * 16 15 14 18 18 C 1.50695 * 110.41311 * 142.63362 * 16 15 14 19 19 O 1.20823 * 120.00084 * 260.00170 * 18 16 15 20 20 O 1.34225 * 120.00215 * 80.00364 * 18 16 15 21 21 N 1.48567 * 104.59159 * 23.85582 * 16 15 14 22 22 C 1.34533 * 115.34228 * 0.26935 * 11 10 9 23 23 S 1.75794 * 110.14674 * 359.59635 * 22 11 10 24 24 H 0.97001 * 119.99509 * 0.02562 * 1 2 3 25 25 H 1.07999 * 122.90092 * 0.05481 * 10 9 7 26 26 H 1.09002 * 110.32526 * 98.47097 * 14 12 11 27 27 H 1.08998 * 110.32190 * 336.36738 * 14 12 11 28 28 H 1.08995 * 110.32672 * 118.84838 * 15 14 12 29 29 H 1.09009 * 110.32136 * 241.05045 * 15 14 12 30 30 H 0.96703 * 117.00581 * 180.02562 * 20 18 16 31 31 H 1.00902 * 110.99892 * 200.96033 * 21 16 15 32 32 H 1.08001 * 124.92325 * 179.69720 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0462 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5403 1.4401 0.7002 7 6 2.0090 -1.2131 0.0005 8 1 3.0889 -1.2132 0.0010 9 6 1.3094 -2.4247 0.0005 10 6 1.8847 -3.6822 0.0005 11 6 0.9834 -4.7113 0.0000 12 6 1.4104 -6.1565 0.0005 13 1 2.4235 -6.2544 0.3906 14 6 1.3231 -6.7443 -1.4244 15 6 0.8280 -8.1927 -1.2334 16 6 0.6584 -8.3609 0.2918 17 1 1.5528 -8.8068 0.7269 18 6 -0.5507 -9.2073 0.5960 19 8 -1.5885 -8.6826 0.9241 20 8 -0.4749 -10.5442 0.5025 21 7 0.4649 -6.9789 0.8015 22 6 -0.3107 -4.3434 -0.0062 23 16 -0.4418 -2.5904 -0.0002 24 1 -0.4849 0.8401 -0.0004 25 1 2.9534 -3.8383 0.0014 26 1 2.3053 -6.7391 -1.8970 27 1 0.6118 -6.1772 -2.0249 28 1 -0.1271 -8.3361 -1.7387 29 1 1.5673 -8.8986 -1.6122 30 1 -1.2766 -11.0448 0.7070 31 1 0.6808 -6.9229 1.7856 32 1 -1.1475 -5.0262 -0.0122 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309382461.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:15 Heat of formation + Delta-G solvation = -76.199330 kcal Electronic energy + Delta-G solvation = -17539.018807 eV Core-core repulsion = 14590.097558 eV Total energy + Delta-G solvation = -2948.921249 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.32814 -38.28479 -36.03389 -35.46964 -33.78213 -30.19674 -30.01023 -28.02766 -24.82647 -24.01559 -21.88199 -20.39650 -20.05177 -18.17254 -17.70829 -17.31571 -16.64103 -16.25981 -15.24722 -15.15252 -14.76561 -14.03533 -13.46383 -13.05472 -12.81456 -12.51426 -12.12148 -11.93368 -11.79319 -11.70331 -11.52326 -11.35241 -11.03914 -10.78058 -10.63849 -10.50818 -10.28073 -10.22823 -9.67147 -9.37770 -8.80890 -8.31616 -7.26736 -6.87210 -6.58340 -4.40836 2.27951 2.70792 2.90765 2.98272 3.03142 3.19033 3.76286 3.80129 4.07549 4.26072 4.52977 4.71944 4.92699 5.06243 5.12852 5.31895 5.52419 5.69949 5.83863 5.99291 6.11712 6.38551 6.49439 6.60813 6.87929 6.96431 7.06964 7.34670 7.47745 7.70339 7.96487 7.99694 8.18378 8.33823 8.66651 8.70128 9.96927 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.049983 B = 0.004220 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.051837 B = 6633.991916 C = 6944.527663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.052 3.948 3 Si 0.931 3.069 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.398 4.398 8 H 0.090 0.910 9 C 0.037 3.963 10 C -0.352 4.352 11 C -0.042 4.042 12 C 0.138 3.862 13 H 0.049 0.951 14 C -0.112 4.112 15 C -0.108 4.108 16 C 0.074 3.926 17 H 0.079 0.921 18 C 0.481 3.519 19 O -0.489 6.489 20 O -0.524 6.524 21 N -0.631 5.631 22 C -0.363 4.363 23 S 0.118 5.882 24 H 0.293 0.707 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.406 0.594 31 H 0.342 0.658 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.129 -11.593 -0.763 11.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.167 4.167 3 Si 0.755 3.245 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.434 4.434 8 H 0.108 0.892 9 C -0.083 4.083 10 C -0.378 4.378 11 C -0.054 4.054 12 C 0.027 3.973 13 H 0.067 0.933 14 C -0.151 4.151 15 C -0.146 4.146 16 C -0.038 4.038 17 H 0.097 0.903 18 C 0.321 3.679 19 O -0.373 6.373 20 O -0.336 6.336 21 N -0.262 5.262 22 C -0.498 4.498 23 S 0.378 5.622 24 H 0.106 0.894 25 H 0.113 0.887 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.265 0.735 31 H 0.158 0.842 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.129 -9.945 -1.109 10.008 hybrid contribution 1.853 -0.957 0.622 2.176 sum 1.981 -10.902 -0.487 11.091 Atomic orbital electron populations 1.68899 1.07481 1.30175 1.35152 1.26138 0.95048 1.02306 0.93193 0.85897 0.80041 0.79191 0.79372 1.19198 1.19933 1.18413 1.19076 0.95101 0.88892 1.40332 0.89239 1.21711 0.94730 0.95520 0.96361 1.19456 0.97233 0.90931 1.30166 1.17676 0.93099 0.91245 1.03399 1.21041 0.92264 0.91951 0.92047 0.93336 1.22353 1.01717 0.93599 0.97400 1.22241 1.02215 0.98474 0.91648 1.21946 0.92277 0.90968 0.98608 0.90344 1.23363 0.90529 0.80441 0.73616 1.90738 1.31408 1.73425 1.41738 1.84531 1.45297 1.20844 1.82968 1.63294 1.53218 1.01693 1.07982 1.25337 0.98621 1.01005 1.24853 1.84535 1.05976 0.96478 1.75197 0.89406 0.88652 0.91143 0.90040 0.90922 0.90403 0.73547 0.84199 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.82 10.65 55.56 0.59 -19.23 16 2 C 0.05 1.28 5.50 -17.27 -0.09 1.18 16 3 Si 0.93 18.15 29.56 -169.99 -5.03 13.12 16 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.40 -10.42 9.29 -38.27 -0.36 -10.78 16 8 H 0.09 2.22 7.85 -52.49 -0.41 1.81 16 9 C 0.04 0.99 6.19 -38.94 -0.24 0.75 16 10 C -0.35 -8.87 9.97 -40.08 -0.40 -9.27 16 11 C -0.04 -0.97 4.79 -106.45 -0.51 -1.48 16 12 C 0.14 2.49 3.46 -67.13 -0.23 2.26 16 13 H 0.05 0.83 8.11 -51.93 -0.42 0.41 16 14 C -0.11 -1.75 6.53 -25.35 -0.17 -1.92 16 15 C -0.11 -1.38 6.54 -25.35 -0.17 -1.55 16 16 C 0.07 1.00 3.69 -67.22 -0.25 0.75 16 17 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 18 C 0.48 6.67 7.51 36.00 0.27 6.94 16 19 O -0.49 -8.72 17.32 -18.75 -0.32 -9.04 16 20 O -0.52 -5.33 13.42 -39.25 -0.53 -5.85 16 21 N -0.63 -10.70 5.98 -98.17 -0.59 -11.29 16 22 C -0.36 -8.88 10.52 29.42 0.31 -8.58 16 23 S 0.12 3.05 20.27 -107.50 -2.18 0.87 16 24 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16 25 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.08 1.44 7.85 -51.93 -0.41 1.03 16 28 H 0.07 0.96 7.85 -51.93 -0.41 0.56 16 29 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 30 H 0.41 2.40 9.10 45.56 0.41 2.82 16 31 H 0.34 5.48 8.92 -39.29 -0.35 5.13 16 32 H 0.13 3.10 7.96 -52.49 -0.42 2.68 16 LS Contribution 290.95 15.07 4.38 4.38 Total: -1.00 -30.54 290.95 -8.33 -38.86 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -2.83 Total: 9.86 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -1.83 Total: -21.68 kcal Atomic # 7 Polarization: -30.52 SS G_CDS: 0.00 Total: -30.52 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.85 Total: -14.90 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -2.18 Total: 0.87 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.54 -8.33 -38.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309382461.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.337 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds