Wall clock time and date at job start Mon Mar 30 2020 04:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86799 * 120.00449 * 2 1 4 4 H 1.48501 * 109.46711 * 269.99846 * 3 2 1 5 5 H 1.48503 * 109.47103 * 29.99597 * 3 2 1 6 6 H 1.48496 * 109.47286 * 149.99323 * 3 2 1 7 7 C 1.40073 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00061 * 180.02562 * 7 2 1 9 9 C 1.39915 * 119.99866 * 0.02562 * 7 2 1 10 10 C 1.38281 * 125.40766 * 179.97438 * 9 7 2 11 11 C 1.36805 * 114.20061 * 180.02562 * 10 9 7 12 12 C 1.50698 * 122.32858 * 180.02562 * 11 10 9 13 13 H 1.09004 * 110.46136 * 22.41259 * 12 11 10 14 14 C 1.54381 * 110.41376 * 260.00083 * 12 11 10 15 15 C 1.54257 * 105.14978 * 217.42278 * 14 12 11 16 16 C 1.54377 * 105.06382 * 359.94367 * 15 14 12 17 17 H 1.09004 * 110.41760 * 264.96131 * 16 15 14 18 18 C 1.50695 * 110.41311 * 142.63362 * 16 15 14 19 19 O 1.20823 * 120.00084 * 260.00170 * 18 16 15 20 20 O 1.34225 * 120.00215 * 80.00364 * 18 16 15 21 21 N 1.48567 * 104.59159 * 23.85582 * 16 15 14 22 22 C 1.34533 * 115.34228 * 0.26935 * 11 10 9 23 23 S 1.75794 * 110.14674 * 359.59635 * 22 11 10 24 24 H 0.97001 * 119.99509 * 0.02562 * 1 2 3 25 25 H 1.07999 * 122.90092 * 0.05481 * 10 9 7 26 26 H 1.09002 * 110.32526 * 98.47097 * 14 12 11 27 27 H 1.08998 * 110.32190 * 336.36738 * 14 12 11 28 28 H 1.08995 * 110.32672 * 118.84838 * 15 14 12 29 29 H 1.09009 * 110.32136 * 241.05045 * 15 14 12 30 30 H 0.96703 * 117.00581 * 180.02562 * 20 18 16 31 31 H 1.00902 * 110.99892 * 200.96033 * 21 16 15 32 32 H 1.08001 * 124.92325 * 179.69720 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0462 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5403 1.4401 0.7002 7 6 2.0090 -1.2131 0.0005 8 1 3.0889 -1.2132 0.0010 9 6 1.3094 -2.4247 0.0005 10 6 1.8847 -3.6822 0.0005 11 6 0.9834 -4.7113 0.0000 12 6 1.4104 -6.1565 0.0005 13 1 2.4235 -6.2544 0.3906 14 6 1.3231 -6.7443 -1.4244 15 6 0.8280 -8.1927 -1.2334 16 6 0.6584 -8.3609 0.2918 17 1 1.5528 -8.8068 0.7269 18 6 -0.5507 -9.2073 0.5960 19 8 -1.5885 -8.6826 0.9241 20 8 -0.4749 -10.5442 0.5025 21 7 0.4649 -6.9789 0.8015 22 6 -0.3107 -4.3434 -0.0062 23 16 -0.4418 -2.5904 -0.0002 24 1 -0.4849 0.8401 -0.0004 25 1 2.9534 -3.8383 0.0014 26 1 2.3053 -6.7391 -1.8970 27 1 0.6118 -6.1772 -2.0249 28 1 -0.1271 -8.3361 -1.7387 29 1 1.5673 -8.8986 -1.6122 30 1 -1.2766 -11.0448 0.7070 31 1 0.6808 -6.9229 1.7856 32 1 -1.1475 -5.0262 -0.0122 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309382461.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:14 Heat of formation + Delta-G solvation = -97.327201 kcal Electronic energy + Delta-G solvation = -17539.934980 eV Core-core repulsion = 14590.097558 eV Total energy + Delta-G solvation = -2949.837422 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.42139 -39.60751 -37.34044 -36.94044 -35.63413 -31.68270 -31.32882 -29.63023 -26.76305 -25.35799 -23.33762 -21.65931 -21.41115 -19.69996 -19.27594 -18.86048 -17.80134 -17.53716 -17.02271 -16.54260 -16.20427 -15.44636 -14.93755 -14.46714 -14.01814 -13.91839 -13.80144 -13.59994 -13.20878 -13.10365 -12.81562 -12.71562 -12.59568 -12.47009 -12.22993 -11.97613 -11.72165 -11.57975 -11.32356 -11.16587 -10.74836 -9.58665 -9.24222 -8.73065 -8.58146 -6.40119 0.88199 1.21515 1.38411 1.52727 1.55536 1.78385 1.93681 2.11826 2.31801 2.34116 3.13304 3.33376 3.62590 3.87209 4.01720 4.18138 4.43802 4.50603 4.68834 4.79621 4.92558 5.03043 5.06689 5.11446 5.28808 5.36702 5.59118 5.63834 5.80654 6.03692 6.19507 6.24079 6.48395 6.73021 6.75533 7.06800 8.13309 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.049983 B = 0.004220 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.051837 B = 6633.991916 C = 6944.527663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.013 3.987 3 Si 1.009 2.991 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.254 1.254 7 C -0.429 4.429 8 H 0.096 0.904 9 C 0.010 3.990 10 C -0.371 4.371 11 C -0.032 4.032 12 C 0.138 3.862 13 H 0.064 0.936 14 C -0.110 4.110 15 C -0.098 4.098 16 C 0.073 3.927 17 H 0.114 0.886 18 C 0.490 3.510 19 O -0.538 6.538 20 O -0.508 6.508 21 N -0.655 5.655 22 C -0.376 4.376 23 S 0.080 5.920 24 H 0.303 0.697 25 H 0.103 0.897 26 H 0.092 0.908 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.427 0.573 31 H 0.343 0.657 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.810 -12.518 -1.010 13.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.204 4.204 3 Si 0.828 3.172 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.178 1.178 7 C -0.464 4.464 8 H 0.114 0.886 9 C -0.110 4.110 10 C -0.397 4.397 11 C -0.044 4.044 12 C 0.026 3.974 13 H 0.082 0.918 14 C -0.148 4.148 15 C -0.136 4.136 16 C -0.038 4.038 17 H 0.132 0.868 18 C 0.332 3.668 19 O -0.426 6.426 20 O -0.322 6.322 21 N -0.286 5.286 22 C -0.512 4.512 23 S 0.340 5.660 24 H 0.116 0.884 25 H 0.121 0.879 26 H 0.111 0.889 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.136 0.864 30 H 0.289 0.711 31 H 0.160 0.840 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.799 -10.939 -1.360 11.169 hybrid contribution 1.307 -0.745 0.705 1.661 sum 3.106 -11.684 -0.655 12.108 Atomic orbital electron populations 1.68981 1.09014 1.31771 1.34305 1.27167 0.95840 1.05669 0.91740 0.84762 0.78644 0.74059 0.79761 1.18319 1.18841 1.17784 1.19457 0.95673 0.89746 1.41510 0.88631 1.22149 0.94992 0.96832 0.97057 1.19715 0.97928 0.91074 1.30948 1.18069 0.92026 0.93983 1.00310 1.21006 0.92965 0.89218 0.94165 0.91784 1.22296 1.02315 0.94930 0.95289 1.22246 1.02917 0.97250 0.91191 1.22087 0.93436 0.89282 0.99019 0.86838 1.23393 0.89739 0.81372 0.72301 1.90736 1.33138 1.74543 1.44229 1.84470 1.46561 1.19041 1.82079 1.63136 1.53393 1.03988 1.08121 1.25246 0.99245 0.99718 1.26960 1.84439 1.06555 0.98461 1.76560 0.88404 0.87878 0.88915 0.92969 0.91695 0.86423 0.71144 0.84021 0.86135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.29 10.65 21.86 0.23 -41.06 16 2 C 0.01 0.62 5.50 85.28 0.47 1.09 16 3 Si 1.01 36.37 29.56 68.60 2.03 38.40 16 4 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 5 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 6 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 7 C -0.43 -22.76 9.29 23.12 0.21 -22.54 16 8 H 0.10 4.78 7.85 -2.92 -0.02 4.76 16 9 C 0.01 0.53 6.19 22.69 0.14 0.67 16 10 C -0.37 -19.01 9.97 21.94 0.22 -18.79 16 11 C -0.03 -1.51 4.79 -21.05 -0.10 -1.62 16 12 C 0.14 4.84 3.46 44.28 0.15 4.99 16 13 H 0.06 2.05 8.11 -2.38 -0.02 2.03 16 14 C -0.11 -3.25 6.53 31.49 0.21 -3.05 16 15 C -0.10 -2.23 6.54 31.49 0.21 -2.02 16 16 C 0.07 1.77 3.69 44.31 0.16 1.94 16 17 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 18 C 0.49 12.60 7.51 71.23 0.54 13.14 16 19 O -0.54 -18.95 17.32 21.97 0.38 -18.56 16 20 O -0.51 -8.68 13.42 -51.37 -0.69 -9.37 16 21 N -0.66 -21.62 5.98 -464.49 -2.78 -24.40 16 22 C -0.38 -19.11 10.52 66.97 0.70 -18.41 16 23 S 0.08 4.33 20.27 -56.49 -1.14 3.18 16 24 H 0.30 13.77 8.30 -92.71 -0.77 13.00 16 25 H 0.10 4.99 8.06 -2.91 -0.02 4.96 16 26 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.05 1.84 7.85 -2.39 -0.02 1.82 16 28 H 0.06 1.59 7.85 -2.39 -0.02 1.57 16 29 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.43 3.78 9.10 -74.06 -0.67 3.10 16 31 H 0.34 10.79 8.92 -89.69 -0.80 9.99 16 32 H 0.12 6.18 7.96 -2.91 -0.02 6.16 16 Total: -1.00 -68.30 290.95 0.63 -67.67 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: -0.31 Total: 28.74 kcal Atomic # 6 Polarization: -47.52 SS G_CDS: 2.91 Total: -44.61 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: -2.54 Total: -65.46 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.31 Total: -27.93 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.40 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -1.14 Total: 3.18 kcal Total: -68.30 0.63 -67.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309382461.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.655 kcal (2) G-P(sol) polarization free energy of solvation -68.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds