Wall clock time and date at job start Mon Mar 30 2020 04:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86797 * 119.99894 * 2 1 4 4 H 1.48502 * 109.47248 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47027 * 120.00373 * 3 2 1 6 6 H 1.48501 * 109.47369 * 239.99900 * 3 2 1 7 7 C 1.40068 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00089 * 355.32131 * 7 2 1 9 9 C 1.39915 * 120.00158 * 175.32822 * 7 2 1 10 10 C 1.38278 * 125.40723 * 189.49977 * 9 7 2 11 11 C 1.36810 * 114.19769 * 179.82229 * 10 9 7 12 12 C 1.50702 * 122.32845 * 180.18409 * 11 10 9 13 13 H 1.09003 * 109.91034 * 339.58014 * 12 11 10 14 14 C 1.53998 * 109.91330 * 100.68002 * 12 11 10 15 15 C 1.54589 * 105.13893 * 120.57963 * 14 12 11 16 16 C 1.54933 * 102.92467 * 21.95594 * 15 14 12 17 17 H 1.08997 * 110.66556 * 81.18653 * 16 15 14 18 18 C 1.50700 * 110.67011 * 204.15390 * 16 15 14 19 19 O 1.20819 * 120.00289 * 99.99826 * 18 16 15 20 20 O 1.34235 * 119.99518 * 280.00107 * 18 16 15 21 21 N 1.47895 * 109.91878 * 218.47371 * 12 11 10 22 22 C 1.34533 * 115.34285 * 0.47307 * 11 10 9 23 23 S 1.75797 * 110.14565 * 359.73688 * 22 11 10 24 24 H 0.97006 * 120.00478 * 178.53214 * 1 2 3 25 25 H 1.08006 * 122.90420 * 0.02562 * 10 9 7 26 26 H 1.09000 * 110.30900 * 239.49908 * 14 12 11 27 27 H 1.09002 * 110.30787 * 1.65671 * 14 12 11 28 28 H 1.09005 * 110.72542 * 140.31610 * 15 14 12 29 29 H 1.09008 * 110.72566 * 263.59369 * 15 14 12 30 30 H 0.96699 * 116.99567 * 179.97438 * 20 18 16 31 31 H 1.00904 * 111.00098 * 335.83216 * 21 12 11 32 32 H 1.07998 * 124.92699 * 179.76511 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 1.2776 2.7465 0.0006 5 1 3.0964 1.6963 1.2125 6 1 3.0964 1.6965 -1.2125 7 6 2.0090 -1.2130 -0.0005 8 1 1.4717 -2.1469 0.0753 9 6 3.4047 -1.2150 -0.0992 10 6 4.1923 -2.3343 -0.2964 11 6 5.5334 -2.0719 -0.3617 12 6 6.5573 -3.1567 -0.5759 13 1 6.1344 -4.1247 -0.3071 14 6 7.0059 -3.1711 -2.0491 15 6 8.5310 -2.9219 -2.0092 16 6 8.9142 -3.3479 -0.5697 17 1 9.0222 -4.4305 -0.5048 18 6 10.1822 -2.6613 -0.1315 19 8 10.1267 -1.6890 0.5834 20 8 11.3733 -3.1302 -0.5357 21 7 7.7576 -2.8858 0.2447 22 6 5.8749 -0.7789 -0.2153 23 16 4.4364 0.2049 0.0153 24 1 -0.4851 -0.8398 -0.0215 25 1 3.7838 -3.3294 -0.3938 26 1 6.7925 -4.1402 -2.5001 27 1 6.5070 -2.3766 -2.6042 28 1 9.0427 -3.5431 -2.7444 29 1 8.7540 -1.8673 -2.1717 30 1 12.1585 -2.6564 -0.2292 31 1 7.8358 -1.9026 0.4575 32 1 6.8861 -0.4003 -0.2368 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309382465.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:16 Heat of formation + Delta-G solvation = -81.316223 kcal Electronic energy + Delta-G solvation = -17746.424072 eV Core-core repulsion = 14797.280938 eV Total energy + Delta-G solvation = -2949.143134 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.61399 -38.63265 -36.27549 -35.70571 -33.89206 -30.46454 -29.88930 -28.36066 -24.94185 -24.15203 -21.87033 -20.69585 -19.88503 -18.97172 -18.32350 -17.67823 -16.79979 -15.87966 -15.75501 -15.07629 -14.86318 -14.29719 -13.73001 -13.40456 -13.27939 -13.16544 -12.52969 -12.18484 -11.93183 -11.83033 -11.62641 -11.55871 -11.15186 -10.85805 -10.57147 -10.53554 -10.41636 -10.25587 -9.89549 -9.62312 -8.70529 -8.56153 -7.67393 -7.54032 -6.96485 -4.60863 2.06148 2.45229 2.68168 2.81759 3.14785 3.17789 3.27588 3.86006 3.88395 3.90689 4.41856 4.68463 4.88368 4.93983 5.00344 5.25892 5.42182 5.50477 5.73011 5.84234 6.07207 6.23796 6.30848 6.37582 6.48675 6.82532 7.08455 7.22430 7.35857 7.53392 7.53601 7.76086 7.88584 7.99813 8.26371 8.46140 9.75411 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.041235 B = 0.004938 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.870382 B = 5669.295623 C = 6055.944717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.050 3.950 3 Si 0.929 3.071 4 H -0.233 1.233 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.445 4.445 8 H 0.092 0.908 9 C 0.056 3.944 10 C -0.350 4.350 11 C -0.023 4.023 12 C 0.135 3.865 13 H 0.089 0.911 14 C -0.137 4.137 15 C -0.141 4.141 16 C 0.075 3.925 17 H 0.122 0.878 18 C 0.484 3.516 19 O -0.506 6.506 20 O -0.516 6.516 21 N -0.649 5.649 22 C -0.365 4.365 23 S -0.045 6.045 24 H 0.290 0.710 25 H 0.106 0.894 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.409 0.591 31 H 0.358 0.642 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.903 -3.879 -3.763 14.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.173 4.173 3 Si 0.751 3.249 4 H -0.156 1.156 5 H -0.133 1.133 6 H -0.131 1.131 7 C -0.481 4.481 8 H 0.110 0.890 9 C -0.062 4.062 10 C -0.374 4.374 11 C -0.034 4.034 12 C 0.023 3.977 13 H 0.107 0.893 14 C -0.177 4.177 15 C -0.180 4.180 16 C -0.036 4.036 17 H 0.140 0.860 18 C 0.325 3.675 19 O -0.393 6.393 20 O -0.328 6.328 21 N -0.283 5.283 22 C -0.497 4.497 23 S 0.211 5.789 24 H 0.102 0.898 25 H 0.124 0.876 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.267 0.733 31 H 0.180 0.820 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.008 -1.294 -2.993 13.411 hybrid contribution 0.954 -2.255 -0.656 2.534 sum 13.962 -3.548 -3.650 14.861 Atomic orbital electron populations 1.70577 1.07728 1.33014 1.30919 1.27312 0.95863 1.03862 0.90284 0.84478 0.79316 0.76337 0.84747 1.15641 1.13318 1.13100 1.20259 0.90485 0.96603 1.40715 0.88963 1.21686 0.95907 0.92694 0.95961 1.19408 0.91497 0.97505 1.28970 1.18119 0.93645 0.92165 0.99488 1.21029 0.88813 0.98247 0.89625 0.89276 1.22836 0.93605 1.02926 0.98288 1.23060 0.97500 1.02170 0.95291 1.22527 0.86453 1.01233 0.93379 0.86001 1.23431 0.85271 0.82110 0.76671 1.90734 1.87422 1.26463 1.34663 1.84526 1.16978 1.59678 1.71600 1.63299 0.99204 1.26914 1.38890 1.24284 0.99363 0.96158 1.29945 1.84293 1.01432 1.14179 1.79036 0.89849 0.87621 0.90892 0.90024 0.89870 0.91065 0.73267 0.82016 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.63 13.66 55.56 0.76 -19.87 16 2 C 0.05 1.27 5.52 -17.28 -0.10 1.18 16 3 Si 0.93 20.24 24.51 -169.99 -4.17 16.07 16 4 H -0.23 -4.80 7.11 56.52 0.40 -4.40 16 5 H -0.21 -4.39 6.31 59.61 0.38 -4.01 16 6 H -0.21 -4.36 6.36 58.37 0.37 -3.99 16 7 C -0.44 -11.73 9.73 -38.27 -0.37 -12.10 16 8 H 0.09 2.48 8.06 -52.48 -0.42 2.05 16 9 C 0.06 1.44 6.02 -38.94 -0.23 1.21 16 10 C -0.35 -8.46 9.95 -40.08 -0.40 -8.85 16 11 C -0.02 -0.50 4.62 -106.45 -0.49 -0.99 16 12 C 0.13 2.34 3.69 -67.80 -0.25 2.09 16 13 H 0.09 1.53 8.09 -51.93 -0.42 1.11 16 14 C -0.14 -1.97 6.56 -25.38 -0.17 -2.13 16 15 C -0.14 -1.71 6.49 -24.88 -0.16 -1.88 16 16 C 0.08 0.98 3.81 -66.78 -0.25 0.73 16 17 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 18 C 0.48 6.31 7.65 36.01 0.28 6.58 16 19 O -0.51 -8.33 16.60 -18.74 -0.31 -8.64 16 20 O -0.52 -4.86 13.42 -39.27 -0.53 -5.38 16 21 N -0.65 -10.87 7.15 -98.48 -0.70 -11.58 16 22 C -0.37 -8.15 10.08 29.42 0.30 -7.85 16 23 S -0.04 -1.06 15.46 -107.50 -1.66 -2.72 16 24 H 0.29 7.20 8.72 -40.82 -0.36 6.84 16 25 H 0.11 2.48 8.06 -52.48 -0.42 2.05 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.08 1.31 7.68 -51.93 -0.40 0.91 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.92 8.05 -51.92 -0.42 0.50 16 30 H 0.41 2.09 9.10 45.56 0.41 2.51 16 31 H 0.36 6.65 5.42 -39.29 -0.21 6.44 16 32 H 0.12 2.55 7.02 -52.49 -0.37 2.18 16 LS Contribution 279.33 15.07 4.21 4.21 Total: -1.00 -28.96 279.33 -6.98 -35.94 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -2.72 Total: 13.99 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -1.85 Total: -22.02 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: 0.05 Total: -31.44 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.84 Total: -14.03 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.17 Total: 16.07 kcal Atomic # 16 Polarization: -1.06 SS G_CDS: -1.66 Total: -2.72 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.96 -6.98 -35.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309382465.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.371 kcal (2) G-P(sol) polarization free energy of solvation -28.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds