Wall clock time and date at job start Mon Mar 30 2020 04:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86797 * 119.99894 * 2 1 4 4 H 1.48502 * 109.47248 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47027 * 120.00373 * 3 2 1 6 6 H 1.48501 * 109.47369 * 239.99900 * 3 2 1 7 7 C 1.40068 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00089 * 355.32131 * 7 2 1 9 9 C 1.39915 * 120.00158 * 175.32822 * 7 2 1 10 10 C 1.38278 * 125.40723 * 189.49977 * 9 7 2 11 11 C 1.36810 * 114.19769 * 179.82229 * 10 9 7 12 12 C 1.50702 * 122.32845 * 180.18409 * 11 10 9 13 13 H 1.09003 * 109.91034 * 339.58014 * 12 11 10 14 14 C 1.53998 * 109.91330 * 100.68002 * 12 11 10 15 15 C 1.54589 * 105.13893 * 120.57963 * 14 12 11 16 16 C 1.54933 * 102.92467 * 21.95594 * 15 14 12 17 17 H 1.08997 * 110.66556 * 81.18653 * 16 15 14 18 18 C 1.50700 * 110.67011 * 204.15390 * 16 15 14 19 19 O 1.20819 * 120.00289 * 99.99826 * 18 16 15 20 20 O 1.34235 * 119.99518 * 280.00107 * 18 16 15 21 21 N 1.47895 * 109.91878 * 218.47371 * 12 11 10 22 22 C 1.34533 * 115.34285 * 0.47307 * 11 10 9 23 23 S 1.75797 * 110.14565 * 359.73688 * 22 11 10 24 24 H 0.97006 * 120.00478 * 178.53214 * 1 2 3 25 25 H 1.08006 * 122.90420 * 0.02562 * 10 9 7 26 26 H 1.09000 * 110.30900 * 239.49908 * 14 12 11 27 27 H 1.09002 * 110.30787 * 1.65671 * 14 12 11 28 28 H 1.09005 * 110.72542 * 140.31610 * 15 14 12 29 29 H 1.09008 * 110.72566 * 263.59369 * 15 14 12 30 30 H 0.96699 * 116.99567 * 179.97438 * 20 18 16 31 31 H 1.00904 * 111.00098 * 335.83216 * 21 12 11 32 32 H 1.07998 * 124.92699 * 179.76511 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 1.2776 2.7465 0.0006 5 1 3.0964 1.6963 1.2125 6 1 3.0964 1.6965 -1.2125 7 6 2.0090 -1.2130 -0.0005 8 1 1.4717 -2.1469 0.0753 9 6 3.4047 -1.2150 -0.0992 10 6 4.1923 -2.3343 -0.2964 11 6 5.5334 -2.0719 -0.3617 12 6 6.5573 -3.1567 -0.5759 13 1 6.1344 -4.1247 -0.3071 14 6 7.0059 -3.1711 -2.0491 15 6 8.5310 -2.9219 -2.0092 16 6 8.9142 -3.3479 -0.5697 17 1 9.0222 -4.4305 -0.5048 18 6 10.1822 -2.6613 -0.1315 19 8 10.1267 -1.6890 0.5834 20 8 11.3733 -3.1302 -0.5357 21 7 7.7576 -2.8858 0.2447 22 6 5.8749 -0.7789 -0.2153 23 16 4.4364 0.2049 0.0153 24 1 -0.4851 -0.8398 -0.0215 25 1 3.7838 -3.3294 -0.3938 26 1 6.7925 -4.1402 -2.5001 27 1 6.5070 -2.3766 -2.6042 28 1 9.0427 -3.5431 -2.7444 29 1 8.7540 -1.8673 -2.1717 30 1 12.1585 -2.6564 -0.2292 31 1 7.8358 -1.9026 0.4575 32 1 6.8861 -0.4003 -0.2368 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309382465.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:16 Heat of formation + Delta-G solvation = -102.429624 kcal Electronic energy + Delta-G solvation = -17747.339618 eV Core-core repulsion = 14797.280938 eV Total energy + Delta-G solvation = -2950.058680 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.64834 -39.91048 -37.53630 -37.06970 -35.73974 -32.08133 -31.03411 -29.85027 -26.76850 -25.44150 -23.25680 -21.70051 -21.43075 -20.83649 -19.60703 -18.93786 -18.21008 -17.42125 -16.92567 -16.62866 -16.08764 -15.61748 -15.20879 -14.97235 -14.62179 -14.55623 -14.19115 -13.79657 -13.48109 -13.06360 -12.87685 -12.62528 -12.54608 -12.49133 -12.27070 -11.93699 -11.81558 -11.71090 -11.54493 -11.47802 -10.46560 -9.89441 -9.59135 -9.43405 -8.80896 -6.59913 0.57138 0.91855 1.08076 1.27985 1.41694 1.45330 1.89883 2.08188 2.14401 2.15013 2.93810 3.23908 3.64768 3.82551 3.95738 4.21390 4.28697 4.43668 4.58629 4.64783 4.84289 4.89036 5.02764 5.11178 5.23237 5.25196 5.39877 5.52437 5.58956 5.70201 5.94868 6.07202 6.20005 6.37487 6.53279 6.93091 7.79333 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.041235 B = 0.004938 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.870382 B = 5669.295623 C = 6055.944717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.022 3.978 3 Si 0.950 3.050 4 H -0.211 1.211 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.479 4.479 8 H 0.068 0.932 9 C 0.029 3.971 10 C -0.357 4.357 11 C -0.025 4.025 12 C 0.135 3.865 13 H 0.091 0.909 14 C -0.133 4.133 15 C -0.129 4.129 16 C 0.073 3.927 17 H 0.148 0.852 18 C 0.492 3.508 19 O -0.547 6.547 20 O -0.501 6.501 21 N -0.662 5.662 22 C -0.357 4.357 23 S -0.034 6.034 24 H 0.285 0.715 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.062 0.938 28 H 0.118 0.882 29 H 0.062 0.938 30 H 0.430 0.570 31 H 0.345 0.655 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.827 -4.157 -4.662 17.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.196 4.196 3 Si 0.767 3.233 4 H -0.134 1.134 5 H -0.125 1.125 6 H -0.121 1.121 7 C -0.514 4.514 8 H 0.087 0.913 9 C -0.089 4.089 10 C -0.382 4.382 11 C -0.036 4.036 12 C 0.023 3.977 13 H 0.109 0.891 14 C -0.172 4.172 15 C -0.168 4.168 16 C -0.037 4.037 17 H 0.165 0.835 18 C 0.335 3.665 19 O -0.437 6.437 20 O -0.314 6.314 21 N -0.296 5.296 22 C -0.490 4.490 23 S 0.222 5.778 24 H 0.096 0.904 25 H 0.123 0.877 26 H 0.116 0.884 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.081 0.919 30 H 0.292 0.708 31 H 0.166 0.834 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 15.947 -1.603 -3.905 16.496 hybrid contribution 0.255 -2.301 -0.384 2.347 sum 16.202 -3.904 -4.288 17.209 Atomic orbital electron populations 1.70628 1.08099 1.32720 1.32884 1.28295 0.96016 1.05941 0.89347 0.84280 0.79274 0.74379 0.85354 1.13392 1.12469 1.12107 1.20227 0.91213 0.96339 1.43663 0.91344 1.21890 0.96087 0.94285 0.96659 1.19716 0.92776 0.97294 1.28416 1.18445 0.93706 0.93405 0.98054 1.21042 0.88230 0.96428 0.91987 0.89088 1.22781 0.94997 1.03708 0.95701 1.23012 0.95894 1.02427 0.95500 1.22667 0.85431 1.02457 0.93159 0.83490 1.23341 0.86167 0.81199 0.75767 1.90732 1.88062 1.28263 1.36660 1.84467 1.16812 1.59339 1.70828 1.63270 1.00345 1.25984 1.39956 1.24645 0.99746 0.96312 1.28251 1.84186 1.01472 1.13380 1.78782 0.90420 0.87747 0.88374 0.91914 0.86356 0.91921 0.70826 0.83410 0.84363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.49 13.66 21.86 0.30 -43.19 16 2 C 0.02 1.17 5.52 85.28 0.47 1.64 16 3 Si 0.95 40.37 24.51 68.60 1.68 42.05 16 4 H -0.21 -8.25 7.11 99.48 0.71 -7.54 16 5 H -0.20 -8.14 6.31 97.52 0.62 -7.53 16 6 H -0.20 -7.99 6.36 98.31 0.63 -7.37 16 7 C -0.48 -26.24 9.73 23.12 0.22 -26.02 16 8 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 9 C 0.03 1.52 6.02 22.69 0.14 1.66 16 10 C -0.36 -17.36 9.95 21.94 0.22 -17.14 16 11 C -0.03 -1.06 4.62 -21.05 -0.10 -1.16 16 12 C 0.13 4.42 3.69 44.32 0.16 4.58 16 13 H 0.09 2.95 8.09 -2.39 -0.02 2.93 16 14 C -0.13 -3.40 6.56 31.47 0.21 -3.19 16 15 C -0.13 -2.63 6.49 31.80 0.21 -2.43 16 16 C 0.07 1.66 3.81 44.46 0.17 1.83 16 17 H 0.15 2.62 8.14 -2.39 -0.02 2.60 16 18 C 0.49 11.33 7.65 71.24 0.55 11.87 16 19 O -0.55 -16.97 16.60 21.98 0.37 -16.61 16 20 O -0.50 -7.45 13.42 -51.47 -0.69 -8.14 16 21 N -0.66 -20.74 7.15 -465.48 -3.33 -24.07 16 22 C -0.36 -15.42 10.08 66.97 0.68 -14.74 16 23 S -0.03 -1.55 15.46 -56.49 -0.87 -2.43 16 24 H 0.28 14.81 8.72 -92.70 -0.81 14.00 16 25 H 0.10 4.99 8.06 -2.91 -0.02 4.96 16 26 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.06 1.87 7.68 -2.39 -0.02 1.85 16 28 H 0.12 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.06 1.41 8.05 -2.38 -0.02 1.39 16 30 H 0.43 2.79 9.10 -74.06 -0.67 2.12 16 31 H 0.35 12.25 5.42 -89.69 -0.49 11.77 16 32 H 0.14 5.51 7.02 -2.91 -0.02 5.49 16 Total: -1.00 -63.45 279.33 0.17 -63.28 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: -0.20 Total: 32.20 kcal Atomic # 6 Polarization: -46.02 SS G_CDS: 2.92 Total: -43.10 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: -3.03 Total: -67.25 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.33 Total: -24.75 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 1.68 Total: 42.05 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -0.87 Total: -2.43 kcal Total: -63.45 0.17 -63.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309382465.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.146 kcal (2) G-P(sol) polarization free energy of solvation -63.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds