Wall clock time and date at job start Mon Mar 30 2020 04:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86798 * 120.00162 * 2 1 4 4 H 1.48504 * 109.47305 * 240.00268 * 3 2 1 5 5 H 1.48504 * 109.47072 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47118 * 120.00269 * 3 2 1 7 7 C 1.39865 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99839 * 197.94838 * 7 2 1 9 9 C 1.41136 * 120.00192 * 17.94839 * 7 2 1 10 10 C 1.40888 * 120.15542 * 204.60895 * 9 7 2 11 11 C 1.36343 * 119.83832 * 180.02562 * 10 9 7 12 12 C 1.39570 * 120.15843 * 359.97438 * 11 10 9 13 13 N 1.38853 * 119.84200 * 179.97438 * 12 11 10 14 14 C 1.46506 * 120.00064 * 179.72652 * 13 12 11 15 15 C 1.53044 * 113.14988 * 255.37117 * 14 13 12 16 16 S 1.81417 * 89.89203 * 211.85283 * 15 14 13 17 17 O 1.42107 * 112.75129 * 280.47600 * 16 15 14 18 18 O 1.42095 * 112.75827 * 136.72951 * 16 15 14 19 19 C 1.53038 * 113.15250 * 154.99805 * 14 13 12 20 20 C 1.39567 * 120.31429 * 0.25184 * 12 11 10 21 21 C 1.36339 * 120.16430 * 359.48580 * 20 12 11 22 22 H 0.97001 * 120.00183 * 0.02562 * 1 2 3 23 23 H 1.07997 * 120.08450 * 359.97438 * 10 9 7 24 24 H 1.07997 * 119.92078 * 179.97438 * 11 10 9 25 25 H 0.96997 * 120.00405 * 359.97438 * 13 12 11 26 26 H 1.08997 * 112.49333 * 25.20771 * 14 13 12 27 27 H 1.09005 * 113.14743 * 327.11521 * 15 14 13 28 28 H 1.09000 * 113.14582 * 96.58830 * 15 14 13 29 29 H 1.09002 * 113.14693 * 263.40131 * 19 14 13 30 30 H 1.09001 * 113.14888 * 32.88657 * 19 14 13 31 31 H 1.07998 * 119.92080 * 179.72148 * 20 12 11 32 32 H 1.08004 * 120.08693 * 180.23127 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6964 -1.2126 5 1 1.2780 2.7465 0.0006 6 1 3.0968 1.6963 1.2124 7 6 2.0083 -1.2113 -0.0005 8 1 3.0489 -1.2342 0.2877 9 6 1.3541 -2.4037 -0.3777 10 6 1.8265 -3.6473 0.0861 11 6 1.1899 -4.7952 -0.2827 12 6 0.0726 -4.7402 -1.1172 13 7 -0.5704 -5.9134 -1.4892 14 6 -1.7472 -5.8593 -2.3602 15 6 -3.0609 -6.0969 -1.6120 16 16 -3.7613 -6.8725 -3.0949 17 8 -4.2016 -5.9229 -4.0560 18 8 -4.4914 -8.0562 -2.8035 19 6 -1.9692 -7.1497 -3.1524 20 6 -0.3981 -3.5121 -1.5843 21 6 0.2253 -2.3559 -1.2194 22 1 -0.4850 0.8400 -0.0004 23 1 2.6913 -3.6914 0.7316 24 1 1.5512 -5.7492 0.0717 25 1 -0.2426 -6.7685 -1.1695 26 1 -1.7638 -4.9654 -2.9836 27 1 -2.9585 -6.7875 -0.7749 28 1 -3.5674 -5.1733 -1.3316 29 1 -1.5613 -7.1080 -4.1624 30 1 -1.6563 -8.0433 -2.6123 31 1 -1.2606 -3.4774 -2.2334 32 1 -0.1423 -1.4059 -1.5785 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309584218.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:02 Heat of formation + Delta-G solvation = -17.898825 kcal Electronic energy + Delta-G solvation = -17503.706824 eV Core-core repulsion = 14557.313675 eV Total energy + Delta-G solvation = -2946.393149 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.54843 -37.43321 -36.76262 -36.13258 -33.87587 -31.92080 -29.57492 -28.34998 -26.71611 -24.52795 -22.44048 -20.95036 -19.85789 -18.91752 -17.31569 -16.87562 -16.58307 -16.39791 -16.04126 -15.05348 -14.77051 -14.28931 -13.92360 -13.34273 -12.88200 -12.66335 -12.57859 -12.37193 -12.34738 -12.23660 -11.75062 -11.64880 -11.37612 -11.05915 -10.94541 -10.73668 -10.56284 -10.42819 -9.79377 -9.39090 -9.33842 -8.68054 -7.59521 -6.73587 -6.52992 -4.12632 0.03653 1.88336 2.84993 3.01403 3.10735 3.13492 3.27116 3.56058 3.79675 3.99883 4.28268 4.32958 4.65244 4.73472 4.84996 5.09563 5.37369 5.65988 5.74013 5.85526 6.16267 6.22742 6.76973 6.83822 7.10737 7.26838 7.43005 7.59314 7.72809 8.06108 8.16063 8.36057 8.53804 8.68884 8.97625 9.05164 10.29296 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.038354 B = 0.004087 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.857426 B = 6848.903277 C = 7363.644195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.075 3.925 3 Si 0.905 3.095 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.467 4.467 8 H 0.074 0.926 9 C 0.079 3.921 10 C -0.190 4.190 11 C -0.150 4.150 12 C 0.077 3.923 13 N -0.729 5.729 14 C 0.193 3.807 15 C -0.620 4.620 16 S 2.410 3.590 17 O -0.916 6.916 18 O -0.933 6.933 19 C -0.617 4.617 20 C -0.162 4.162 21 C -0.126 4.126 22 H 0.278 0.722 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.390 0.610 26 H 0.122 0.878 27 H 0.142 0.858 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.142 0.858 31 H 0.090 0.910 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.890 -10.058 -4.624 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.497 4.497 8 H 0.092 0.908 9 C 0.077 3.923 10 C -0.210 4.210 11 C -0.172 4.172 12 C -0.019 4.019 13 N -0.364 5.364 14 C 0.081 3.919 15 C -0.753 4.753 16 S 2.591 3.409 17 O -0.913 6.913 18 O -0.930 6.930 19 C -0.746 4.746 20 C -0.183 4.183 21 C -0.146 4.146 22 H 0.089 0.911 23 H 0.111 0.889 24 H 0.105 0.895 25 H 0.224 0.776 26 H 0.140 0.860 27 H 0.160 0.840 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.160 0.840 31 H 0.108 0.892 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.224 -9.994 -5.295 12.909 hybrid contribution 1.446 0.657 0.849 1.801 sum -4.778 -9.337 -4.446 11.392 Atomic orbital electron populations 1.69835 1.07423 1.28950 1.36927 1.25814 0.94671 1.01000 0.92559 0.86435 0.80143 0.80664 0.79811 1.18997 1.20500 1.19213 1.19375 0.97993 0.91387 1.40985 0.90833 1.17523 0.92187 0.92023 0.90612 1.20549 1.02870 0.92561 1.05065 1.19799 0.97510 0.97158 1.02740 1.17324 0.96255 0.85434 1.02919 1.43518 1.30695 1.06353 1.55794 1.20740 0.85393 0.95513 0.90245 1.31694 1.09815 1.14122 1.19629 1.08070 0.77403 0.76223 0.79188 1.93723 1.79617 1.61056 1.56908 1.93628 1.69873 1.45494 1.83964 1.31423 1.27210 1.06888 1.09126 1.20139 1.01687 0.91960 1.04513 1.20955 0.98250 0.96494 0.98936 0.91099 0.88918 0.89465 0.77648 0.86018 0.84023 0.85569 0.85585 0.84007 0.89177 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.89 10.96 55.54 0.61 -20.28 16 2 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 3 Si 0.90 18.82 29.60 -169.99 -5.03 13.79 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.47 -12.39 9.03 -37.87 -0.34 -12.73 16 8 H 0.07 1.88 7.91 -52.49 -0.41 1.47 16 9 C 0.08 2.09 5.57 -106.79 -0.60 1.49 16 10 C -0.19 -4.56 9.74 -39.26 -0.38 -4.94 16 11 C -0.15 -3.22 9.82 -39.77 -0.39 -3.61 16 12 C 0.08 1.57 6.67 -83.69 -0.56 1.01 16 13 N -0.73 -11.39 5.46 -62.20 -0.34 -11.73 16 14 C 0.19 2.44 3.67 -67.89 -0.25 2.19 16 15 C -0.62 -6.47 7.75 37.18 0.29 -6.18 16 16 S 2.41 22.33 7.55 -107.50 -0.81 21.52 16 17 O -0.92 -11.56 18.18 -57.30 -1.04 -12.60 16 18 O -0.93 -11.23 18.18 -57.30 -1.04 -12.27 16 19 C -0.62 -5.40 7.69 37.18 0.29 -5.11 16 20 C -0.16 -3.60 9.18 -39.77 -0.37 -3.97 16 21 C -0.13 -3.21 8.64 -39.26 -0.34 -3.55 16 22 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 23 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 24 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 25 H 0.39 5.23 8.73 -40.82 -0.36 4.88 16 26 H 0.12 1.63 6.11 -51.93 -0.32 1.31 16 27 H 0.14 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.13 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.14 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.78 6.02 -52.49 -0.32 1.47 16 32 H 0.12 3.16 6.16 -52.48 -0.32 2.84 16 LS Contribution 286.05 15.07 4.31 4.31 Total: -1.00 -32.74 286.05 -9.48 -42.22 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -3.40 Total: 8.61 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: -2.74 Total: -33.57 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.27 Total: -32.00 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -2.08 Total: -24.87 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Atomic # 16 Polarization: 22.33 SS G_CDS: -0.81 Total: 21.52 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.74 -9.48 -42.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309584218.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.319 kcal (2) G-P(sol) polarization free energy of solvation -32.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds