Wall clock time and date at job start Mon Mar 30 2020 04:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86798 * 120.00162 * 2 1 4 4 H 1.48504 * 109.47305 * 240.00268 * 3 2 1 5 5 H 1.48504 * 109.47072 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47118 * 120.00269 * 3 2 1 7 7 C 1.39865 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99839 * 197.94838 * 7 2 1 9 9 C 1.41136 * 120.00192 * 17.94839 * 7 2 1 10 10 C 1.40888 * 120.15542 * 204.60895 * 9 7 2 11 11 C 1.36343 * 119.83832 * 180.02562 * 10 9 7 12 12 C 1.39570 * 120.15843 * 359.97438 * 11 10 9 13 13 N 1.38853 * 119.84200 * 179.97438 * 12 11 10 14 14 C 1.46506 * 120.00064 * 179.72652 * 13 12 11 15 15 C 1.53044 * 113.14988 * 255.37117 * 14 13 12 16 16 S 1.81417 * 89.89203 * 211.85283 * 15 14 13 17 17 O 1.42107 * 112.75129 * 280.47600 * 16 15 14 18 18 O 1.42095 * 112.75827 * 136.72951 * 16 15 14 19 19 C 1.53038 * 113.15250 * 154.99805 * 14 13 12 20 20 C 1.39567 * 120.31429 * 0.25184 * 12 11 10 21 21 C 1.36339 * 120.16430 * 359.48580 * 20 12 11 22 22 H 0.97001 * 120.00183 * 0.02562 * 1 2 3 23 23 H 1.07997 * 120.08450 * 359.97438 * 10 9 7 24 24 H 1.07997 * 119.92078 * 179.97438 * 11 10 9 25 25 H 0.96997 * 120.00405 * 359.97438 * 13 12 11 26 26 H 1.08997 * 112.49333 * 25.20771 * 14 13 12 27 27 H 1.09005 * 113.14743 * 327.11521 * 15 14 13 28 28 H 1.09000 * 113.14582 * 96.58830 * 15 14 13 29 29 H 1.09002 * 113.14693 * 263.40131 * 19 14 13 30 30 H 1.09001 * 113.14888 * 32.88657 * 19 14 13 31 31 H 1.07998 * 119.92080 * 179.72148 * 20 12 11 32 32 H 1.08004 * 120.08693 * 180.23127 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6964 -1.2126 5 1 1.2780 2.7465 0.0006 6 1 3.0968 1.6963 1.2124 7 6 2.0083 -1.2113 -0.0005 8 1 3.0489 -1.2342 0.2877 9 6 1.3541 -2.4037 -0.3777 10 6 1.8265 -3.6473 0.0861 11 6 1.1899 -4.7952 -0.2827 12 6 0.0726 -4.7402 -1.1172 13 7 -0.5704 -5.9134 -1.4892 14 6 -1.7472 -5.8593 -2.3602 15 6 -3.0609 -6.0969 -1.6120 16 16 -3.7613 -6.8725 -3.0949 17 8 -4.2016 -5.9229 -4.0560 18 8 -4.4914 -8.0562 -2.8035 19 6 -1.9692 -7.1497 -3.1524 20 6 -0.3981 -3.5121 -1.5843 21 6 0.2253 -2.3559 -1.2194 22 1 -0.4850 0.8400 -0.0004 23 1 2.6913 -3.6914 0.7316 24 1 1.5512 -5.7492 0.0717 25 1 -0.2426 -6.7685 -1.1695 26 1 -1.7638 -4.9654 -2.9836 27 1 -2.9585 -6.7875 -0.7749 28 1 -3.5674 -5.1733 -1.3316 29 1 -1.5613 -7.1080 -4.1624 30 1 -1.6563 -8.0433 -2.6123 31 1 -1.2606 -3.4774 -2.2334 32 1 -0.1423 -1.4059 -1.5785 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309584218.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:02 Heat of formation + Delta-G solvation = -41.967154 kcal Electronic energy + Delta-G solvation = -17504.750505 eV Core-core repulsion = 14557.313675 eV Total energy + Delta-G solvation = -2947.436830 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.02230 -38.44061 -38.03550 -37.07031 -35.56885 -33.45646 -31.37026 -30.05731 -27.51130 -26.28082 -23.83522 -22.64712 -21.34382 -19.75437 -19.16892 -18.15767 -17.64365 -17.31090 -17.01448 -16.76833 -16.03352 -15.57878 -15.42597 -14.53859 -14.41709 -14.21595 -13.88375 -13.75116 -13.39303 -13.29286 -13.27735 -13.05555 -12.74015 -12.60932 -12.47273 -12.28254 -11.80069 -11.58293 -11.28208 -11.15563 -11.07385 -10.34714 -9.41413 -8.56747 -8.21000 -6.02660 -0.78886 1.04606 1.14306 1.19533 1.40495 1.50936 1.59385 2.26871 2.72994 2.80129 2.82381 3.27733 3.42754 3.74670 3.86934 3.98757 4.35151 4.44551 4.50344 4.63300 4.88948 4.98577 5.03836 5.14466 5.26647 5.44116 5.66624 5.79578 5.95062 6.17864 6.37251 6.63420 6.83797 7.07449 7.12197 7.28523 8.46552 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.038354 B = 0.004087 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.857426 B = 6848.903277 C = 7363.644195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.034 3.966 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.507 4.507 8 H 0.068 0.932 9 C 0.038 3.962 10 C -0.199 4.199 11 C -0.159 4.159 12 C 0.105 3.895 13 N -0.721 5.721 14 C 0.166 3.834 15 C -0.624 4.624 16 S 2.458 3.542 17 O -0.948 6.948 18 O -0.953 6.953 19 C -0.594 4.594 20 C -0.175 4.175 21 C -0.147 4.147 22 H 0.283 0.717 23 H 0.096 0.904 24 H 0.121 0.879 25 H 0.405 0.595 26 H 0.112 0.888 27 H 0.156 0.844 28 H 0.122 0.878 29 H 0.145 0.855 30 H 0.168 0.832 31 H 0.111 0.889 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.085 -11.985 -5.083 13.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.179 4.179 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.187 1.187 7 C -0.539 4.539 8 H 0.086 0.914 9 C 0.035 3.965 10 C -0.219 4.219 11 C -0.181 4.181 12 C 0.006 3.994 13 N -0.356 5.356 14 C 0.056 3.944 15 C -0.755 4.755 16 S 2.641 3.359 17 O -0.945 6.945 18 O -0.950 6.950 19 C -0.724 4.724 20 C -0.197 4.197 21 C -0.167 4.167 22 H 0.093 0.907 23 H 0.115 0.885 24 H 0.139 0.861 25 H 0.241 0.759 26 H 0.130 0.870 27 H 0.174 0.826 28 H 0.141 0.859 29 H 0.164 0.836 30 H 0.186 0.814 31 H 0.129 0.871 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.456 -11.973 -5.762 14.773 hybrid contribution 1.431 1.006 0.950 1.991 sum -5.025 -10.967 -4.812 12.987 Atomic orbital electron populations 1.69901 1.08748 1.29925 1.38225 1.26589 0.95425 1.04052 0.91786 0.85366 0.78800 0.76362 0.79808 1.18752 1.19498 1.18656 1.19604 0.98091 0.92855 1.43308 0.91364 1.17840 0.93446 0.93071 0.92146 1.20765 1.03193 0.92889 1.05038 1.20117 0.97565 0.97741 1.02707 1.17416 0.95107 0.86565 1.00318 1.43509 1.31061 1.05292 1.55699 1.21029 0.85087 0.97452 0.90868 1.31722 1.08376 1.14666 1.20727 1.06650 0.77089 0.74657 0.77548 1.93681 1.80694 1.62199 1.57945 1.93601 1.71010 1.46263 1.84148 1.31270 1.25564 1.05595 1.09983 1.20351 1.02353 0.91885 1.05097 1.20892 0.98988 0.96868 0.99951 0.90697 0.88539 0.86066 0.75887 0.87034 0.82553 0.85895 0.83631 0.81444 0.87137 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.34 10.96 21.82 0.24 -45.10 16 2 C 0.03 1.76 5.13 85.23 0.44 2.19 16 3 Si 0.97 39.62 29.60 68.60 2.03 41.65 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 6 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.51 -28.14 9.03 23.38 0.21 -27.93 16 8 H 0.07 3.66 7.91 -2.91 -0.02 3.64 16 9 C 0.04 2.06 5.57 -21.27 -0.12 1.94 16 10 C -0.20 -9.61 9.74 22.48 0.22 -9.40 16 11 C -0.16 -6.55 9.82 22.15 0.22 -6.34 16 12 C 0.10 4.10 6.67 38.67 0.26 4.36 16 13 N -0.72 -20.05 5.46 -350.70 -1.92 -21.96 16 14 C 0.17 3.70 3.67 45.02 0.17 3.86 16 15 C -0.62 -11.27 7.75 72.00 0.56 -10.71 16 16 S 2.46 38.85 7.55 -56.49 -0.43 38.43 16 17 O -0.95 -22.21 18.18 -127.88 -2.32 -24.54 16 18 O -0.95 -20.26 18.18 -127.88 -2.32 -22.58 16 19 C -0.59 -7.87 7.69 71.99 0.55 -7.31 16 20 C -0.18 -7.77 9.18 22.15 0.20 -7.57 16 21 C -0.15 -7.72 8.64 22.48 0.19 -7.53 16 22 H 0.28 13.93 8.30 -92.71 -0.77 13.16 16 23 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 24 H 0.12 4.11 8.06 -2.91 -0.02 4.08 16 25 H 0.40 9.05 8.73 -92.71 -0.81 8.24 16 26 H 0.11 2.74 6.11 -2.39 -0.01 2.73 16 27 H 0.16 2.40 8.14 -2.38 -0.02 2.38 16 28 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.15 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.17 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.11 4.33 6.02 -2.91 -0.02 4.31 16 32 H 0.10 5.50 6.16 -2.91 -0.02 5.49 16 Total: -1.00 -72.41 286.05 -1.48 -73.88 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 0.34 Total: 24.65 kcal Atomic # 6 Polarization: -67.32 SS G_CDS: 2.90 Total: -64.42 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -1.68 Total: -67.06 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -4.65 Total: -47.12 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Atomic # 16 Polarization: 38.85 SS G_CDS: -0.43 Total: 38.43 kcal Total: -72.41 -1.48 -73.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309584218.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.916 kcal (2) G-P(sol) polarization free energy of solvation -72.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds