Wall clock time and date at job start Mon Mar 30 2020 05:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99939 * 2 1 4 4 H 1.48498 * 109.46939 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47206 * 300.00512 * 3 2 1 6 6 H 1.48502 * 109.46719 * 60.00528 * 3 2 1 7 7 C 1.37879 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99993 * 172.91394 * 7 2 1 9 9 C 1.50699 * 119.99569 * 352.91374 * 7 2 1 10 10 C 1.53000 * 115.55055 * 84.53959 * 9 7 2 11 11 N 1.46491 * 109.47396 * 39.67562 * 10 9 7 12 12 C 1.38469 * 120.00271 * 181.37616 * 11 10 9 13 13 N 1.29437 * 125.18738 * 179.72490 * 12 11 10 14 14 C 1.33637 * 116.89196 * 179.97438 * 13 12 11 15 15 C 1.47160 * 122.47559 * 180.02562 * 14 13 12 16 16 N 1.34785 * 120.00340 * 359.97327 * 15 14 13 17 17 O 1.21650 * 119.99950 * 179.97438 * 15 14 13 18 18 C 1.35050 * 115.04568 * 359.97438 * 14 13 12 19 19 S 1.76050 * 125.18356 * 359.41533 * 12 11 10 20 20 C 1.53008 * 117.51771 * 230.23542 * 9 7 2 21 21 C 1.53000 * 60.00018 * 107.48253 * 20 9 7 22 22 H 0.96998 * 120.00061 * 5.01799 * 1 2 3 23 23 H 1.09004 * 109.46757 * 279.67413 * 10 9 7 24 24 H 1.09000 * 109.47068 * 159.68143 * 10 9 7 25 25 H 0.97003 * 119.99946 * 1.09691 * 11 10 9 26 26 H 0.96994 * 119.99603 * 0.02562 * 16 15 14 27 27 H 0.96997 * 120.00004 * 180.02562 * 16 15 14 28 28 H 1.07993 * 125.87170 * 180.02562 * 18 14 13 29 29 H 1.08993 * 117.50020 * 214.97593 * 20 9 7 30 30 H 1.09001 * 117.49427 * 359.97438 * 20 9 7 31 31 H 1.09001 * 117.49806 * 252.51160 * 21 20 9 32 32 H 1.08993 * 117.51679 * 107.48012 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0784 -1.1975 -0.1159 9 6 1.2597 -2.4942 0.1599 10 6 0.6734 -3.0817 -1.1254 11 7 1.6222 -2.8936 -2.2256 12 6 1.2967 -3.3220 -3.5014 13 7 2.0541 -3.2024 -4.5443 14 6 1.5735 -3.6759 -5.6979 15 6 2.3304 -3.6046 -6.9578 16 7 3.5566 -3.0453 -6.9767 17 8 1.8495 -4.0505 -7.9824 18 6 0.3423 -4.2256 -5.6216 19 16 -0.2071 -4.1194 -3.9510 20 6 1.7705 -3.4759 1.2166 21 6 0.4723 -2.7021 1.4552 22 1 -0.4850 0.8368 -0.0735 23 1 -0.2626 -2.5757 -1.3622 24 1 0.4856 -4.1463 -0.9855 25 1 2.4768 -2.4653 -2.0611 26 1 3.9402 -2.6901 -6.1598 27 1 4.0554 -2.9980 -7.8073 28 1 -0.2091 -4.6593 -6.4427 29 1 1.6889 -4.5401 0.9961 30 1 2.6458 -3.1815 1.7956 31 1 0.4934 -1.8986 2.1915 32 1 -0.4636 -3.2571 1.3916 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309819834.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:26 Heat of formation + Delta-G solvation = 26.801953 kcal Electronic energy + Delta-G solvation = -17491.338306 eV Core-core repulsion = 14579.176279 eV Total energy + Delta-G solvation = -2912.162027 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.89358 -38.20029 -37.17249 -34.35200 -33.47224 -32.16114 -29.48550 -26.25370 -25.45411 -24.61267 -21.76008 -21.24555 -19.99684 -19.01009 -18.26411 -17.19801 -16.30515 -16.15438 -15.49961 -15.11736 -14.84796 -14.45669 -14.09150 -14.00802 -13.48072 -13.05931 -12.68519 -12.45454 -11.79269 -11.54905 -11.14827 -11.08617 -10.64163 -10.43684 -10.19430 -9.95873 -9.78651 -9.62653 -9.37865 -9.12090 -8.91764 -8.66280 -8.34619 -7.24707 -6.25591 -4.35078 1.04884 1.42979 1.96556 2.43521 3.16196 3.26329 3.28161 3.44166 3.68738 3.83196 4.23182 4.82840 5.03804 5.11248 5.53120 5.67114 5.75151 6.02667 6.12692 6.20265 6.27145 6.52133 6.61045 6.79212 6.87043 7.02347 7.21202 7.30914 7.44976 7.65424 7.94235 8.11845 8.25939 8.39705 8.67566 9.34135 10.82092 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.020781 B = 0.005539 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.062792 B = 5054.102419 C = 5793.362512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.079 3.921 3 Si 0.890 3.110 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.028 3.972 10 C 0.158 3.842 11 N -0.645 5.645 12 C 0.369 3.631 13 N -0.560 5.560 14 C 0.057 3.943 15 C 0.603 3.397 16 N -0.838 5.838 17 O -0.548 6.548 18 C -0.237 4.237 19 S 0.062 5.938 20 C -0.208 4.208 21 C -0.148 4.148 22 H 0.263 0.737 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.421 0.579 26 H 0.413 0.587 27 H 0.401 0.599 28 H 0.179 0.821 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.170 -6.078 -5.646 8.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.126 4.126 3 Si 0.717 3.283 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.027 3.973 10 C 0.034 3.966 11 N -0.282 5.282 12 C -0.006 4.006 13 N -0.290 5.290 14 C -0.075 4.075 15 C 0.385 3.615 16 N -0.401 5.401 17 O -0.426 6.426 18 C -0.382 4.382 19 S 0.309 5.691 20 C -0.245 4.245 21 C -0.187 4.187 22 H 0.073 0.927 23 H 0.090 0.910 24 H 0.059 0.941 25 H 0.263 0.737 26 H 0.243 0.757 27 H 0.231 0.769 28 H 0.196 0.804 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.022 -6.348 -5.298 8.331 hybrid contribution 1.425 1.447 -0.542 2.102 sum 2.447 -4.901 -5.840 8.007 Atomic orbital electron populations 1.69957 1.05992 1.27159 1.47452 1.24978 0.94794 0.99085 0.93774 0.86565 0.80327 0.83588 0.77774 1.19534 1.20926 1.20810 1.20324 0.93120 0.88378 1.52530 0.91856 1.18904 0.98750 0.94303 0.85365 1.21206 0.91637 0.97065 0.86644 1.44458 1.22077 1.60311 1.01355 1.24271 0.91518 0.94516 0.90273 1.66629 1.34295 1.30792 0.97329 1.19661 0.93540 1.02174 0.92153 1.17238 0.81062 0.76733 0.86442 1.43635 1.18456 1.62647 1.15328 1.90823 1.69638 1.48622 1.33520 1.26445 1.00003 1.12039 0.99691 1.85049 1.21113 1.60271 1.02691 1.23108 0.98542 0.95595 1.07240 1.22528 0.92604 1.01226 1.02299 0.92693 0.91033 0.94074 0.73733 0.75699 0.76902 0.80359 0.91431 0.90124 0.89672 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.53 12.97 55.43 0.72 -21.81 16 2 C 0.08 1.96 5.39 -17.82 -0.10 1.87 16 3 Si 0.89 19.66 29.55 -169.99 -5.02 14.64 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.51 -12.05 7.44 -34.44 -0.26 -12.31 16 8 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 9 C 0.03 0.59 1.71 -155.65 -0.27 0.32 16 10 C 0.16 3.08 5.67 -4.05 -0.02 3.05 16 11 N -0.65 -12.07 5.48 -61.02 -0.33 -12.41 16 12 C 0.37 6.58 8.42 -88.02 -0.74 5.84 16 13 N -0.56 -9.73 10.02 -10.59 -0.11 -9.84 16 14 C 0.06 0.95 6.67 -84.59 -0.56 0.39 16 15 C 0.60 9.42 8.06 -12.63 -0.10 9.31 16 16 N -0.84 -9.88 8.87 30.38 0.27 -9.61 16 17 O -0.55 -9.81 17.50 5.23 0.09 -9.72 16 18 C -0.24 -3.68 10.83 29.60 0.32 -3.36 16 19 S 0.06 0.96 22.62 -107.50 -2.43 -1.47 16 20 C -0.21 -3.96 9.88 -26.73 -0.26 -4.22 16 21 C -0.15 -3.07 9.51 -26.73 -0.25 -3.32 16 22 H 0.26 6.61 8.32 -40.82 -0.34 6.27 16 23 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 24 H 0.04 0.72 7.95 -51.93 -0.41 0.31 16 25 H 0.42 8.11 7.58 -40.82 -0.31 7.80 16 26 H 0.41 4.59 8.31 -40.82 -0.34 4.26 16 27 H 0.40 3.71 8.93 -40.82 -0.36 3.34 16 28 H 0.18 2.47 8.01 -52.49 -0.42 2.05 16 29 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 30 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 31 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 299.47 15.07 4.51 4.51 Total: -1.00 -27.02 299.47 -8.05 -35.07 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -3.50 Total: 13.06 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -2.25 Total: -2.43 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.55 Total: -53.66 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.43 Total: -1.47 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.02 -8.05 -35.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309819834.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.870 kcal (2) G-P(sol) polarization free energy of solvation -27.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds