Wall clock time and date at job start Mon Mar 30 2020 05:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99939 * 2 1 4 4 H 1.48498 * 109.46939 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47206 * 300.00512 * 3 2 1 6 6 H 1.48502 * 109.46719 * 60.00528 * 3 2 1 7 7 C 1.37879 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99993 * 172.91394 * 7 2 1 9 9 C 1.50699 * 119.99569 * 352.91374 * 7 2 1 10 10 C 1.53000 * 115.55055 * 84.53959 * 9 7 2 11 11 N 1.46491 * 109.47396 * 39.67562 * 10 9 7 12 12 C 1.38469 * 120.00271 * 181.37616 * 11 10 9 13 13 N 1.29437 * 125.18738 * 179.72490 * 12 11 10 14 14 C 1.33637 * 116.89196 * 179.97438 * 13 12 11 15 15 C 1.47160 * 122.47559 * 180.02562 * 14 13 12 16 16 N 1.34785 * 120.00340 * 359.97327 * 15 14 13 17 17 O 1.21650 * 119.99950 * 179.97438 * 15 14 13 18 18 C 1.35050 * 115.04568 * 359.97438 * 14 13 12 19 19 S 1.76050 * 125.18356 * 359.41533 * 12 11 10 20 20 C 1.53008 * 117.51771 * 230.23542 * 9 7 2 21 21 C 1.53000 * 60.00018 * 107.48253 * 20 9 7 22 22 H 0.96998 * 120.00061 * 5.01799 * 1 2 3 23 23 H 1.09004 * 109.46757 * 279.67413 * 10 9 7 24 24 H 1.09000 * 109.47068 * 159.68143 * 10 9 7 25 25 H 0.97003 * 119.99946 * 1.09691 * 11 10 9 26 26 H 0.96994 * 119.99603 * 0.02562 * 16 15 14 27 27 H 0.96997 * 120.00004 * 180.02562 * 16 15 14 28 28 H 1.07993 * 125.87170 * 180.02562 * 18 14 13 29 29 H 1.08993 * 117.50020 * 214.97593 * 20 9 7 30 30 H 1.09001 * 117.49427 * 359.97438 * 20 9 7 31 31 H 1.09001 * 117.49806 * 252.51160 * 21 20 9 32 32 H 1.08993 * 117.51679 * 107.48012 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0784 -1.1975 -0.1159 9 6 1.2597 -2.4942 0.1599 10 6 0.6734 -3.0817 -1.1254 11 7 1.6222 -2.8936 -2.2256 12 6 1.2967 -3.3220 -3.5014 13 7 2.0541 -3.2024 -4.5443 14 6 1.5735 -3.6759 -5.6979 15 6 2.3304 -3.6046 -6.9578 16 7 3.5566 -3.0453 -6.9767 17 8 1.8495 -4.0505 -7.9824 18 6 0.3423 -4.2256 -5.6216 19 16 -0.2071 -4.1194 -3.9510 20 6 1.7705 -3.4759 1.2166 21 6 0.4723 -2.7021 1.4552 22 1 -0.4850 0.8368 -0.0735 23 1 -0.2626 -2.5757 -1.3622 24 1 0.4856 -4.1463 -0.9855 25 1 2.4768 -2.4653 -2.0611 26 1 3.9402 -2.6901 -6.1598 27 1 4.0554 -2.9980 -7.8073 28 1 -0.2091 -4.6593 -6.4427 29 1 1.6889 -4.5401 0.9961 30 1 2.6458 -3.1815 1.7956 31 1 0.4934 -1.8986 2.1915 32 1 -0.4636 -3.2571 1.3916 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309819834.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:25 Heat of formation + Delta-G solvation = 8.402855 kcal Electronic energy + Delta-G solvation = -17492.136151 eV Core-core repulsion = 14579.176279 eV Total energy + Delta-G solvation = -2912.959871 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.14619 -39.53703 -38.70250 -35.79102 -34.58836 -34.01061 -30.81257 -27.86743 -27.09443 -25.92302 -23.13366 -22.76918 -21.50407 -20.42778 -19.55173 -18.31750 -17.96682 -17.53695 -16.79747 -16.64120 -16.35938 -16.02064 -15.48390 -15.22923 -14.95383 -14.61899 -14.01745 -13.95533 -13.51822 -12.97835 -12.88997 -12.79131 -12.36366 -12.02095 -11.53148 -11.38644 -11.34215 -10.83965 -10.71859 -10.69705 -10.47343 -10.22437 -9.95654 -8.60543 -8.13239 -6.24521 -0.22519 0.13096 0.69686 1.13946 1.38979 1.45430 1.52178 2.08309 2.41094 2.42397 2.70685 3.16580 3.46331 3.64432 4.18386 4.34203 4.44520 4.49281 4.61718 4.67200 4.85183 5.00801 5.05428 5.27111 5.45286 5.65483 5.75546 5.77179 5.88610 6.28232 6.36088 6.57595 6.82441 6.90677 7.25637 7.45725 8.93763 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.020781 B = 0.005539 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.062792 B = 5054.102419 C = 5793.362512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.038 3.962 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.504 4.504 8 H 0.059 0.941 9 C 0.002 3.998 10 C 0.174 3.826 11 N -0.653 5.653 12 C 0.345 3.655 13 N -0.561 5.561 14 C 0.037 3.963 15 C 0.601 3.399 16 N -0.817 5.817 17 O -0.576 6.576 18 C -0.230 4.230 19 S 0.097 5.903 20 C -0.182 4.182 21 C -0.155 4.155 22 H 0.259 0.741 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.416 0.584 26 H 0.418 0.582 27 H 0.415 0.585 28 H 0.196 0.804 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.666 -7.008 -6.109 9.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.001 3.999 10 C 0.050 3.950 11 N -0.291 5.291 12 C -0.029 4.029 13 N -0.291 5.291 14 C -0.096 4.096 15 C 0.383 3.617 16 N -0.380 5.380 17 O -0.456 6.456 18 C -0.375 4.375 19 S 0.345 5.655 20 C -0.219 4.219 21 C -0.193 4.193 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.256 0.744 26 H 0.249 0.751 27 H 0.247 0.753 28 H 0.213 0.787 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.559 -7.276 -5.774 9.419 hybrid contribution 1.287 1.690 -0.435 2.168 sum 2.845 -5.586 -6.209 8.824 Atomic orbital electron populations 1.70043 1.06905 1.27254 1.49330 1.25519 0.95321 1.01389 0.94194 0.85812 0.79644 0.80926 0.77078 1.18956 1.21554 1.21185 1.20556 0.93056 0.89584 1.50973 0.92334 1.19020 0.99773 0.94503 0.86603 1.20943 0.90538 0.97719 0.85841 1.44269 1.21756 1.61349 1.01681 1.24422 0.92852 0.95589 0.90072 1.66597 1.34708 1.30378 0.97465 1.19884 0.94314 1.03060 0.92318 1.17197 0.81839 0.76927 0.85743 1.43482 1.17263 1.60965 1.16331 1.90810 1.70475 1.50212 1.34116 1.26790 0.99720 1.10688 1.00288 1.84936 1.19353 1.59009 1.02224 1.23111 0.97338 0.96546 1.04954 1.22457 0.94165 1.01291 1.01398 0.93141 0.93436 0.91948 0.74367 0.75069 0.75256 0.78677 0.88704 0.90247 0.92100 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.98 12.97 21.45 0.28 -46.70 16 2 C 0.04 1.88 5.39 84.65 0.46 2.33 16 3 Si 0.94 40.51 29.55 68.60 2.03 42.54 16 4 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.50 -23.84 7.44 25.60 0.19 -23.65 16 8 H 0.06 2.76 7.82 -2.91 -0.02 2.74 16 9 C 0.00 0.07 1.71 -52.92 -0.09 -0.02 16 10 C 0.17 6.56 5.67 86.38 0.49 7.05 16 11 N -0.65 -23.86 5.48 -346.95 -1.90 -25.76 16 12 C 0.35 11.86 8.42 179.44 1.51 13.37 16 13 N -0.56 -18.79 10.02 -187.41 -1.88 -20.67 16 14 C 0.04 1.15 6.67 40.48 0.27 1.42 16 15 C 0.60 17.88 8.06 86.58 0.70 18.58 16 16 N -0.82 -17.85 8.87 -176.04 -1.56 -19.41 16 17 O -0.58 -19.85 17.50 -4.19 -0.07 -19.92 16 18 C -0.23 -6.71 10.83 67.09 0.73 -5.98 16 19 S 0.10 2.85 22.62 -56.49 -1.28 1.57 16 20 C -0.18 -6.57 9.88 30.60 0.30 -6.27 16 21 C -0.15 -6.27 9.51 30.60 0.29 -5.98 16 22 H 0.26 13.23 8.32 -92.71 -0.77 12.46 16 23 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 24 H 0.06 2.06 7.95 -2.39 -0.02 2.04 16 25 H 0.42 15.80 7.58 -92.71 -0.70 15.10 16 26 H 0.42 8.58 8.31 -92.71 -0.77 7.81 16 27 H 0.41 6.87 8.93 -92.71 -0.83 6.04 16 28 H 0.20 4.96 8.01 -2.91 -0.02 4.94 16 29 H 0.09 2.91 8.08 -2.39 -0.02 2.89 16 30 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -56.33 299.47 -0.66 -56.99 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: -1.11 Total: 30.51 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 4.85 Total: 0.86 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -5.06 Total: -112.54 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.07 Total: -19.92 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.28 Total: 1.57 kcal Total: -56.33 -0.66 -56.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309819834.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.393 kcal (2) G-P(sol) polarization free energy of solvation -56.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds