Wall clock time and date at job start Mon Mar 30 2020 04:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31695 * 119.72344 * 2 1 4 4 C 1.31913 * 121.88354 * 180.02562 * 3 2 1 5 5 C 1.38362 * 121.09701 * 0.02562 * 4 3 2 6 6 S 1.76198 * 120.34496 * 180.02562 * 5 4 3 7 7 O 1.42101 * 106.40077 * 203.53591 * 6 5 4 8 8 O 1.42101 * 106.39981 * 336.45899 * 6 5 4 9 9 N 1.65604 * 107.21993 * 89.99534 * 6 5 4 10 10 C 1.36939 * 119.99696 * 64.99961 * 9 6 5 11 11 H 1.08000 * 120.00005 * 0.02562 * 10 9 6 12 12 C 1.38812 * 119.99731 * 179.97438 * 10 9 6 13 13 N 1.31623 * 119.99701 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 120.00244 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47327 * 89.99865 * 14 12 10 16 16 H 1.48498 * 109.47129 * 209.99874 * 14 12 10 17 17 H 1.48500 * 109.46786 * 329.99576 * 14 12 10 18 18 C 1.38342 * 119.30758 * 0.02562 * 5 4 3 19 19 C 1.39585 * 119.71789 * 180.02562 * 2 1 3 20 20 C 1.43195 * 120.57069 * 359.72496 * 19 2 1 21 21 N 3.49124 * 80.42311 * 179.84495 * 2 1 3 22 22 H 1.08998 * 109.46849 * 269.98079 * 1 2 3 23 23 H 1.08996 * 109.46534 * 29.98057 * 1 2 3 24 24 H 1.09001 * 109.46989 * 149.98126 * 1 2 3 25 25 H 1.08004 * 119.45424 * 180.02562 * 4 3 2 26 26 H 0.96995 * 120.00072 * 245.00053 * 9 6 5 27 27 H 0.97004 * 119.99790 * 179.97438 * 13 12 10 28 28 H 1.08006 * 120.85203 * 179.97438 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1600 1.1437 0.0000 4 6 3.4782 1.1934 -0.0005 5 6 4.2370 0.0364 -0.0016 6 16 5.9967 0.1259 -0.0016 7 8 6.4609 -1.1014 -0.5470 8 8 6.3339 1.3949 -0.5449 9 7 6.4864 0.1495 1.5803 10 6 6.2653 -0.9387 2.3817 11 1 5.7720 -1.8123 1.9820 12 6 6.6762 -0.9191 3.7074 13 7 6.4632 -1.9648 4.4779 14 14 7.5301 0.5918 4.3985 15 1 6.5160 1.5210 4.9583 16 1 8.4710 0.1813 5.4715 17 1 8.2822 1.2742 3.3150 18 6 3.5996 -1.1914 -0.0027 19 6 2.1990 -1.2123 -0.0005 20 6 1.4893 -2.4560 0.0048 21 7 0.9262 -3.4426 0.0093 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3632 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5141 25 1 3.9735 2.1532 -0.0001 26 1 6.9297 0.9340 1.9391 27 1 6.7507 -1.9513 5.4042 28 1 4.1673 -2.1102 -0.0040 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336675352.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:19 Heat of formation + Delta-G solvation = -29.023213 kcal Electronic energy + Delta-G solvation = -17620.486701 eV Core-core repulsion = 14570.070819 eV Total energy + Delta-G solvation = -3050.415882 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.62576 -38.18688 -37.86293 -36.80534 -36.58021 -34.49663 -33.77002 -33.39243 -29.28897 -26.19149 -25.94784 -23.77679 -21.44844 -20.45404 -19.81828 -18.38104 -18.16881 -17.91709 -16.86308 -16.67315 -16.10906 -15.92603 -14.97806 -14.63278 -14.55387 -14.53598 -14.47958 -14.30043 -13.62440 -13.50889 -13.29546 -13.22724 -13.07775 -13.02717 -12.89806 -12.49396 -12.21016 -12.03038 -11.91838 -11.29281 -10.85067 -10.45100 -10.35079 -8.30133 -5.95033 -0.81256 -0.47953 -0.29372 1.37423 1.41752 1.43233 1.49680 1.62080 2.27003 2.34230 2.45676 2.52816 2.85456 3.01124 3.16335 3.29304 3.48642 3.69553 3.97642 4.15360 4.41679 4.50794 4.61297 4.77031 4.94568 4.99462 5.24454 5.74669 6.17278 6.35357 6.49148 6.99224 7.15911 8.84297 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.019211 B = 0.007291 C = 0.006503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.140395 B = 3839.357403 C = 4304.544776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.228 3.772 3 N -0.498 5.498 4 C 0.232 3.768 5 C -0.736 4.736 6 S 2.698 3.302 7 O -0.984 6.984 8 O -0.983 6.983 9 N -0.992 5.992 10 C -0.307 4.307 11 H 0.095 0.905 12 C -0.002 4.002 13 N -0.934 5.934 14 Si 0.934 3.066 15 H -0.259 1.259 16 H -0.284 1.284 17 H -0.240 1.240 18 C 0.076 3.924 19 C -0.114 4.114 20 C 0.282 3.718 21 N -0.433 5.433 22 H 0.107 0.893 23 H 0.110 0.890 24 H 0.084 0.916 25 H 0.203 0.797 26 H 0.402 0.598 27 H 0.274 0.726 28 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.185 8.586 -6.778 13.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.088 3.912 3 N -0.208 5.208 4 C 0.073 3.927 5 C -0.822 4.822 6 S 2.786 3.214 7 O -0.975 6.975 8 O -0.973 6.973 9 N -0.747 5.747 10 C -0.440 4.440 11 H 0.113 0.887 12 C -0.204 4.204 13 N -0.576 5.576 14 Si 0.757 3.243 15 H -0.184 1.184 16 H -0.209 1.209 17 H -0.163 1.163 18 C 0.047 3.953 19 C -0.120 4.120 20 C -0.033 4.033 21 N -0.108 5.108 22 H 0.126 0.874 23 H 0.129 0.871 24 H 0.103 0.897 25 H 0.219 0.781 26 H 0.238 0.762 27 H 0.083 0.917 28 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.112 7.644 -7.463 14.041 hybrid contribution 0.829 -0.148 1.188 1.457 sum -8.283 7.496 -6.275 12.813 Atomic orbital electron populations 1.21097 0.85041 1.05588 1.05530 1.22240 0.98878 0.85965 0.84159 1.67889 1.09543 1.27576 1.15791 1.23194 0.89217 0.98005 0.82266 1.32209 1.30211 1.00046 1.19743 1.02110 0.74234 0.72516 0.72570 1.93518 1.79409 1.46812 1.77714 1.93499 1.83739 1.42193 1.77821 1.51601 1.68609 1.23291 1.31246 1.18700 1.39041 0.92972 0.93292 0.88684 1.25763 0.98385 1.00215 0.96017 1.69846 1.48401 1.31540 1.07830 0.85749 0.79527 0.79595 0.79418 1.18350 1.20929 1.16337 1.21504 0.93024 0.98164 0.82608 1.16816 0.92608 0.88779 1.13819 1.25090 0.92974 0.92215 0.93069 1.81264 1.09375 1.10502 1.09681 0.87443 0.87120 0.89718 0.78067 0.76204 0.91678 0.82618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 9.78 71.24 0.70 -1.13 15 2 C 0.23 5.40 6.82 42.91 0.29 5.69 15 3 N -0.50 -12.63 10.26 -182.79 -1.88 -14.50 15 4 C 0.23 6.19 10.68 84.71 0.90 7.09 15 5 C -0.74 -22.86 5.90 22.32 0.13 -22.72 15 6 S 2.70 97.17 5.71 -56.49 -0.32 96.85 15 7 O -0.98 -41.64 17.05 -128.00 -2.18 -43.82 15 8 O -0.98 -34.93 17.30 -128.00 -2.21 -37.14 15 9 N -0.99 -39.91 5.55 -54.26 -0.30 -40.21 15 10 C -0.31 -14.93 10.12 84.03 0.85 -14.08 15 11 H 0.10 4.95 8.05 -2.91 -0.02 4.93 15 12 C 0.00 -0.12 5.50 84.86 0.47 0.34 15 13 N -0.93 -51.92 13.97 21.65 0.30 -51.62 15 14 Si 0.93 37.54 27.74 68.60 1.90 39.44 15 15 H -0.26 -9.87 7.11 99.48 0.71 -9.16 15 16 H -0.28 -11.64 7.11 99.48 0.71 -10.93 15 17 H -0.24 -8.54 6.52 99.48 0.65 -7.89 15 18 C 0.08 2.35 9.38 22.74 0.21 2.56 15 19 C -0.11 -3.10 5.74 -21.26 -0.12 -3.22 15 20 C 0.28 7.94 13.84 88.33 1.22 9.17 15 21 N -0.43 -13.42 18.54 19.00 0.35 -13.07 15 22 H 0.11 1.48 8.14 -2.39 -0.02 1.46 15 23 H 0.11 1.37 8.14 -2.39 -0.02 1.35 15 24 H 0.08 1.26 7.09 -2.39 -0.02 1.25 15 25 H 0.20 4.30 7.62 -2.91 -0.02 4.28 15 26 H 0.40 14.67 5.88 -96.75 -0.57 14.10 15 27 H 0.27 14.32 8.31 -92.71 -0.77 13.55 15 28 H 0.16 4.93 7.70 -2.91 -0.02 4.91 15 Total: -1.00 -63.45 275.53 0.91 -62.53 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.60 Total: 17.85 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 4.66 Total: -16.31 kcal Atomic # 7 Polarization: -117.88 SS G_CDS: -1.52 Total: -119.40 kcal Atomic # 8 Polarization: -76.57 SS G_CDS: -4.40 Total: -80.96 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 1.90 Total: 39.44 kcal Atomic # 16 Polarization: 97.17 SS G_CDS: -0.32 Total: 96.85 kcal Total: -63.45 0.91 -62.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336675352.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.508 kcal (2) G-P(sol) polarization free energy of solvation -63.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds